CmaCh00G000420 (gene) Cucurbita maxima (Rimu) v1.1

Overview
NameCmaCh00G000420
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu) v1.1)
DescriptionUnknown protein
LocationCma_Chr00: 2828584 .. 2829014 (+)
RNA-Seq ExpressionCmaCh00G000420
SyntenyCmaCh00G000420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGGATAAGCTTAATCATCGAGAGGGAAATAGCTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGGTTTGTCAGGAGGTTTACCAAGAAGCATCCACCCTTGAAAGAGTGCGTAATAGCTCATTGATTGAGCGCTCTTGCGCCGAAGTTGAACGGGACTAAGCGATCTGCCGAAGCTGTGGTATGTAAAAAAACATTGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACTCGTGCGAGCAGTGGTGGATGAAGCAGAAGCGAGAATGTCGGCTTGAGTAACGCAAACATTTGTGAGAATCCAATGCCCCAAAAACCTAAGGGTTCCACCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCAAAAGGCGTAGTCGATGGAAAATAG

mRNA sequence

ATGGGGGATAAGCTTAATCATCGAGAGGGAAATAGCTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGTTGAACGGGACTAAGCGATCTGCCGAAGCTGTGGTATGTAAAAAAACATTGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACTCGTGCGAGCAGTGTAACGCAAACATTTGTGAGAATCCAATGCCCCAAAAACCTAAGGGTTCCACCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCAAAAGGCGTAGTCGATGGAAAATAG

Coding sequence (CDS)

ATGGGGGATAAGCTTAATCATCGAGAGGGAAATAGCTCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTAGGGGTGCAGTTGAACGGGACTAAGCGATCTGCCGAAGCTGTGGTATGTAAAAAAACATTGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCACTCGTGCGAGCAGTGTAACGCAAACATTTGTGAGAATCCAATGCCCCAAAAACCTAAGGGTTCCACCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCAAAAGGCGTAGTCGATGGAAAATAG

Protein sequence

MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGSTRASSVTQTFVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK
Homology
BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match: A0A2G3B5T9 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_27106 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 8.4e-22
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 0

Query: 1   MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
           MGDKL+ REGNS DHQLRPLN RSVIKEVGV+    +   E    +++L G      G  
Sbjct: 64  MGDKLHRREGNSPDHQLRPLNGRSVIKEVGVR---RQPGGEHFALERSLRGSGGGRSGRE 123

Query: 61  RASSVTQTFVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
                  T VRIQCPKNLRVP QGSSTEGE GPKIRPK VVDG+
Sbjct: 124 NVDLSNATLVRIQCPKNLRVPLQGSSTEGELGPKIRPKDVVDGQ 164

BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match: A0A6N2L9E4 (Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS197109 PE=3 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.3e-21
Identity = 68/132 (51.52%), Postives = 74/132 (56.06%), Query Frame = 0

Query: 2   GDKLNHREGNSSDHQLRPLNDRSVIKE--------------------VGVQLNGTKRSAE 61
           GDKL+ REGNS DHQLRPLNDRSVIKE                       ++NG      
Sbjct: 260 GDKLHRREGNSPDHQLRPLNDRSVIKEEVCLEAATLERVRNSSLIERSCAKMNGLS-DLR 319

Query: 62  AVVCKKTLVG---------ERSALEGSTRASSVTQTFVRIQCPKNLRVPPQGSSTEGESG 105
           +  CK   VG         ER    GS        T VRIQCP+NLRVPPQGSSTEGESG
Sbjct: 320 SCGCKNASVGAFRLEEAPRERGGRSGSENVGLSNATLVRIQCPENLRVPPQGSSTEGESG 379

BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match: A0A5A7VA45 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold2613G00040 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.3e-17
Identity = 62/106 (58.49%), Postives = 71/106 (66.98%), Query Frame = 0

Query: 1   MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
           M DKL+ REGN+ DHQLRPLND SVIKEVGVQ    +  A A V  +      SA     
Sbjct: 1   MRDKLHRREGNNLDHQLRPLNDCSVIKEVGVQ---RQPGAPARVVVEEAEAGMSAF---- 60

Query: 61  RASSVTQTFVRIQCPKN--LRVPPQGSSTEGESGPKIRPKGVVDGK 105
               + QT VRIQCP+N  + VPPQGSSTEGE GPKIRPKGVV+G+
Sbjct: 61  ----LRQTLVRIQCPENRSVGVPPQGSSTEGELGPKIRPKGVVEGQ 95

BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match: A0A5A7SRJ8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1620G00020 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-17
Identity = 62/106 (58.49%), Postives = 70/106 (66.04%), Query Frame = 0

Query: 1   MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
           M DKL+ REGN+ DHQLRPLND SVIKEVGVQ    +  A A V  +      SA     
Sbjct: 223 MRDKLHRREGNNLDHQLRPLNDCSVIKEVGVQ---RQPGAPAQVVVEEAEAGMSAF---- 282

Query: 61  RASSVTQTFVRIQCPKN--LRVPPQGSSTEGESGPKIRPKGVVDGK 105
               + QT VRIQCP+N  + VPPQGS TEGE GPKIRPKGVVDG+
Sbjct: 283 ----LRQTLVRIQCPENRSVGVPPQGSFTEGELGPKIRPKGVVDGQ 317

BLAST of CmaCh00G000420 vs. ExPASy TrEMBL
Match: A0A0R0IG95 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G164000 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 9.0e-16
Identity = 51/64 (79.69%), Postives = 53/64 (82.81%), Query Frame = 0

Query: 1  MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
          MGDKL+ REGNS DHQLRPLNDRSVIKE    +NG KRSAEAV CKK  VGERSALEG T
Sbjct: 1  MGDKLHRREGNSPDHQLRPLNDRSVIKE----MNGAKRSAEAVGCKKESVGERSALEGRT 60

Query: 61 RASS 65
          RASS
Sbjct: 61 RASS 60

BLAST of CmaCh00G000420 vs. NCBI nr
Match: KAG9438445.1 (hypothetical protein H6P81_021615 [Aristolochia fimbriata])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = 0

Query: 1   MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
           MGDKL+ REGNS DHQLRPLNDRSVIKEVGVQ              +   GERSALE ST
Sbjct: 1   MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEEST 60

Query: 61  RASSVTQT-----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
           RAS   ++               QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 61  RASRCGRSGSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 101

BLAST of CmaCh00G000420 vs. NCBI nr
Match: KAG9438465.1 (hypothetical protein H6P81_021588 [Aristolochia fimbriata])

HSP 1 Score: 119.0 bits (297), Expect = 2.4e-23
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = 0

Query: 1   MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
           MGDKL+ REGNS DHQLRPLNDRSVIKEVGVQ              +   GERSALE ST
Sbjct: 60  MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEEST 119

Query: 61  RASSVTQT-----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
           RAS   ++               QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 120 RASRCGRSGSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 160

BLAST of CmaCh00G000420 vs. NCBI nr
Match: KAG9438520.1 (hypothetical protein H6P81_021535 [Aristolochia fimbriata])

HSP 1 Score: 117.9 bits (294), Expect = 5.4e-23
Identity = 70/115 (60.87%), Postives = 77/115 (66.96%), Query Frame = 0

Query: 1   MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
           MGDKL+ REGN+ DHQLRPLNDRSVIKEVGVQ              +   GERSALE ST
Sbjct: 60  MGDKLHRREGNNPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEEST 119

Query: 61  RASSVTQT-----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
           RAS   ++               QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 120 RASRCGRSGSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 160

BLAST of CmaCh00G000420 vs. NCBI nr
Match: PHU01855.1 (hypothetical protein BC332_27106 [Capsicum chinense])

HSP 1 Score: 112.8 bits (281), Expect = 1.7e-21
Identity = 63/104 (60.58%), Postives = 70/104 (67.31%), Query Frame = 0

Query: 1   MGDKLNHREGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGST 60
           MGDKL+ REGNS DHQLRPLN RSVIKEVGV+    +   E    +++L G      G  
Sbjct: 64  MGDKLHRREGNSPDHQLRPLNGRSVIKEVGVR---RQPGGEHFALERSLRGSGGGRSGRE 123

Query: 61  RASSVTQTFVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
                  T VRIQCPKNLRVP QGSSTEGE GPKIRPK VVDG+
Sbjct: 124 NVDLSNATLVRIQCPKNLRVPLQGSSTEGELGPKIRPKDVVDGQ 164

BLAST of CmaCh00G000420 vs. NCBI nr
Match: KAG9438481.1 (hypothetical protein H6P81_021574 [Aristolochia fimbriata])

HSP 1 Score: 107.5 bits (267), Expect = 7.3e-20
Identity = 65/107 (60.75%), Postives = 70/107 (65.42%), Query Frame = 0

Query: 9   EGNSSDHQLRPLNDRSVIKEVGVQLNGTKRSAEAVVCKKTLVGERSALEGSTRASSVTQT 68
           EGNS DHQLRPLNDRSVIKEVGVQ              +   GERSALE STRAS   ++
Sbjct: 20  EGNSPDHQLRPLNDRSVIKEVGVQ--------------RQPGGERSALEESTRASRCGRS 79

Query: 69  -----------FVRIQCPKNLRVPPQGSSTEGESGPKIRPKGVVDGK 105
                          QCP+NLRVPPQGSSTEGESGPKIRPKGVVDG+
Sbjct: 80  GSENVGLSNANIGENQCPENLRVPPQGSSTEGESGPKIRPKGVVDGQ 112

BLAST of CmaCh00G000420 vs. TAIR 10
Match: AT2G07706.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:ATMG00470.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 43.5 bits (101), Expect = 1.2e-04
Identity = 21/24 (87.50%), Postives = 21/24 (87.50%), Query Frame = 0

Query: 9  EGNSSDHQLRPLNDRSVIKEVGVQ 33
          EGNS DHQLRP N RSVIKEVGVQ
Sbjct: 57 EGNSPDHQLRPPNGRSVIKEVGVQ 80

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A2G3B5T98.4e-2260.58Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_27106 PE=4 SV=1[more]
A0A6N2L9E49.3e-2151.52Uncharacterized protein ycf68 OS=Salix viminalis OX=40686 GN=SVIM_LOCUS197109 PE... [more]
A0A5A7VA451.3e-1758.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SRJ81.6e-1758.49Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0R0IG959.0e-1679.69Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_09G164000 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG9438445.12.4e-2361.74hypothetical protein H6P81_021615 [Aristolochia fimbriata][more]
KAG9438465.12.4e-2361.74hypothetical protein H6P81_021588 [Aristolochia fimbriata][more]
KAG9438520.15.4e-2360.87hypothetical protein H6P81_021535 [Aristolochia fimbriata][more]
PHU01855.11.7e-2160.58hypothetical protein BC332_27106 [Capsicum chinense][more]
KAG9438481.17.3e-2060.75hypothetical protein H6P81_021574 [Aristolochia fimbriata][more]
Match NameE-valueIdentityDescription
AT2G07706.11.2e-0487.50unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..23
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..104
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..90

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh00G000420.1CmaCh00G000420.1mRNA