CmaCh00G000410 (gene) Cucurbita maxima (Rimu) v1.1

Overview


Name	CmaCh00G000410
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu) v1.1)
Description	30S ribosomal protein S12, chloroplastic
Location	Cma_Chr00: 2817477 .. 2817908 (+)
RNA-Seq Expression	CmaCh00G000410
Synteny	CmaCh00G000410

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTTTGTCAAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACGGTCACCCCCAAAAAACAAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGAGATTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTTTGTCAAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACGGTCACCCCCAAAAAACAAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGAGATTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGAATGAAAACGTGACTGAATTGGTCCCGGTCACTCTTCGGGACGGAATGGAAGAGGGGAGGAGATTCTCGAACGAGGAAAAGGATCCAATGACTTCGAAAGAATTGAACGAGGAGCCGTATGAGGTGAAAATCTCATGTACGGTTTTGTCAAGTGGCAGTAAGGGTGACTTATCTGTCAACTTTTCTACGGTCACCCCCAAAAAACAAAACTCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGAGATTTGAAATCACTGCTTATATACCTAGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVNFSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL

Homology

[Close]

BLAST of CmaCh00G000410 vs. ExPASy Swiss-Prot
Match: A4GYN8 (30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 7.4e-42
Identity = 86/95 (90.53%), Postives = 89/95 (93.68%), Query Frame = 0


Query: 46  SCTVLSSGSKGDLSVNFSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVV 105
           +CT + SGSKGDLSVNFST+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVV
Sbjct: 33  TCTRVYSGSKGDLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVV 92

Query: 106 LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 141
           LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 93  LVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 127

[Close]

BLAST of CmaCh00G000410 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.3e-35
Identity = 75/86 (87.21%), Postives = 79/86 (91.86%), Query Frame = 0


Query: 55  KGDLSVNFSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKD 114
           +G  +  +ST+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEHSVVLVRGGRVKD
Sbjct: 31  RGTCTRVYSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKD 90

Query: 115 LPGVRYHIVRGTLDAVGVKDRQQGRS 141
           LPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 91  LPGVRYHIVRGTLDAVGVKDRQQGRS 116

[Close]

BLAST of CmaCh00G000410 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-35
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 64  TVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           T+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmaCh00G000410 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-35
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 64  TVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           T+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmaCh00G000410 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-35
Identity = 75/80 (93.75%), Postives = 76/80 (95.00%), Query Frame = 0


Query: 64  TVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           T+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRSSAL 144
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 99  RGTLDAVGVKDRQQGRSSAL 118

[Close]

BLAST of CmaCh00G000410 vs. ExPASy TrEMBL
Match: A0A6J1F0L1 (uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC111438394 PE=3 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 6.7e-70
Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFST+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CmaCh00G000410 vs. ExPASy TrEMBL
Match: A0A3S3NSS0 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02749900 PE=3 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 3.9e-62
Identity = 129/142 (90.85%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FST+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]

BLAST of CmaCh00G000410 vs. ExPASy TrEMBL
Match: A0A6A5N1Q8 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 2.4e-59
Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FST+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEH VVLVRGG VKDLPGVRYH
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYH 199

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTL A+GVKDRQQGRSSAL
Sbjct: 200 IVRGTLYAIGVKDRQQGRSSAL 220

[Close]

BLAST of CmaCh00G000410 vs. ExPASy TrEMBL
Match: A0A443Q5I9 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02780500 PE=3 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 7.6e-58
Identity = 123/142 (86.62%), Postives = 127/142 (89.44%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYE         S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYE---------SDSKGDLSVN 67

Query: 62  FSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FST+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 140

[Close]

BLAST of CmaCh00G000410 vs. ExPASy TrEMBL
Match: A0A443Q433 (30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae OX=337451 GN=CKAN_02724200 PE=3 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 4.9e-57
Identity = 123/142 (86.62%), Postives = 128/142 (90.14%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCTVL +     LS  
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCTVLVTVRVTYLST- 67

Query: 62  FSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
            ST+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  -STITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 147

[Close]

BLAST of CmaCh00G000410 vs. NCBI nr
Match: XP_022932068.1 (uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 uncharacterized protein LOC111783982 [Cucurbita pepo subsp. pepo] >XP_023520572.1 uncharacterized protein LOC111783984 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 273.1 bits (697), Expect = 1.4e-69
Identity = 139/143 (97.20%), Postives = 140/143 (97.90%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV
Sbjct: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60

Query: 61  NFSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFST+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CmaCh00G000410 vs. NCBI nr
Match: XP_038896566.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 263.5 bits (672), Expect = 1.1e-66
Identity = 135/143 (94.41%), Postives = 137/143 (95.80%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVT+LVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLSV
Sbjct: 1   MNENVTKLVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSV 60

Query: 61  NFSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFST+TPK QNSALRKVARVRLTS FEI AYIP IGHNLQEHS VLVRGGRVKDLPGVRY
Sbjct: 61  NFSTITPKNQNSALRKVARVRLTSGFEIIAYIPGIGHNLQEHSAVLVRGGRVKDLPGVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CmaCh00G000410 vs. NCBI nr
Match: XP_038902483.1 (30S ribosomal protein S12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 254.2 bits (648), Expect = 6.6e-64
Identity = 132/143 (92.31%), Postives = 135/143 (94.41%), Query Frame = 0


Query: 1   MNENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSV 60
           MNENVTELV VTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKIS TVLSSGSKGDLS+
Sbjct: 1   MNENVTELVLVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISRTVLSSGSKGDLSI 60

Query: 61  NFSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRY 120
           NFST+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQE+ VVLVRG RVKDLP VRY
Sbjct: 61  NFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEYFVVLVRGERVKDLPNVRY 120

Query: 121 HIVRGTLDAVGVKDRQQGRSSAL 144
           HIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 121 HIVRGTLDAVGVKDRQQGRSSAL 143

[Close]

BLAST of CmaCh00G000410 vs. NCBI nr
Match: RWR98012.1 (LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micranthum f. kanehirae])

HSP 1 Score: 247.3 bits (630), Expect = 8.1e-62
Identity = 129/142 (90.85%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVTELV VTLRDG+EEGRRFSNEEKDP+TSKELNEEPYEVKISCT   S SKGDLSVN
Sbjct: 8   HENVTELVLVTLRDGVEEGRRFSNEEKDPITSKELNEEPYEVKISCT---SDSKGDLSVN 67

Query: 62  FSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FST+TPKK NSALRKVARVRLTS FEITAYIP IGHN QEHSVVLVRGGRVKDLPGVRYH
Sbjct: 68  FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYH 127

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTLDAVGVKDRQQGRSSAL
Sbjct: 128 IVRGTLDAVGVKDRQQGRSSAL 146

[Close]

BLAST of CmaCh00G000410 vs. NCBI nr
Match: KAF1876942.1 (hypothetical protein Lal_00033867 [Lupinus albus])

HSP 1 Score: 238.0 bits (606), Expect = 4.9e-59
Identity = 125/142 (88.03%), Postives = 132/142 (92.96%), Query Frame = 0


Query: 2   NENVTELVPVTLRDGMEEGRRFSNEEKDPMTSKELNEEPYEVKISCTVLSSGSKGDLSVN 61
           +ENVT+LV VTLRDG+EEG RFSNEEKDPMTSKELN+E YEVKISC+VL SGSKGDLSVN
Sbjct: 80  HENVTKLVLVTLRDGVEEGGRFSNEEKDPMTSKELNKESYEVKISCSVLLSGSKGDLSVN 139

Query: 62  FSTVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYH 121
           FST+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEH VVLVRGG VKDLPGVRYH
Sbjct: 140 FSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHFVVLVRGG-VKDLPGVRYH 199

Query: 122 IVRGTLDAVGVKDRQQGRSSAL 144
           IVRGTL A+GVKDRQQGRSSAL
Sbjct: 200 IVRGTLYAIGVKDRQQGRSSAL 220

[Close]

BLAST of CmaCh00G000410 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 64  TVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           T+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmaCh00G000410 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 64  TVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           T+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmaCh00G000410 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 146.7 bits (369), Expect = 1.4e-35
Identity = 73/77 (94.81%), Postives = 74/77 (96.10%), Query Frame = 0


Query: 64  TVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 123
           T+TPKK NSALRKVARVRLTS FEITAYIP IGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 39  TITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 98

Query: 124 RGTLDAVGVKDRQQGRS 141
           RGTLDAVGVKDRQQGRS
Sbjct: 99  RGTLDAVGVKDRQQGRS 115

[Close]

BLAST of CmaCh00G000410 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.7e-22
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 63  STVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHI 122
           ST TPKK NSA RK+A+VRL++R +I A+IP  GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 123 VRGTLDAVGVKDRQQGRS 141
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

[Close]

BLAST of CmaCh00G000410 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 101.3 bits (251), Expect = 6.7e-22
Identity = 48/78 (61.54%), Postives = 61/78 (78.21%), Query Frame = 0


Query: 63  STVTPKKQNSALRKVARVRLTSRFEITAYIPSIGHNLQEHSVVLVRGGRVKDLPGVRYHI 122
           ST TPKK NSA RK+A+VRL++R +I A+IP  GHN QEHS VL+RGGRVKD PGV+ H 
Sbjct: 38  STRTPKKPNSAPRKIAKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHC 97

Query: 123 VRGTLDAVGVKDRQQGRS 141
           +RG  D +G+  R++GRS
Sbjct: 98  IRGVKDLMGIPGRRRGRS 115

The following BLAST results are available for this feature:

BLAST of CmaCh00G000410 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4GYN8	7.4e-42	90.53	30S ribosomal protein S12-B, chloroplastic OS=Populus trichocarpa OX=3694 GN=rps...	[more]
A4QJX7	2.3e-35	87.21	30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN...	[more]
Q1KXY0	3.0e-35	93.75	30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A...	[more]
Q332V3	3.0e-35	93.75	30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE...	[more]
Q0G9J5	3.0e-35	93.75	30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r...	[more]

BLAST of CmaCh00G000410 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F0L1	6.7e-70	97.20	uncharacterized protein LOC111438394 OS=Cucurbita moschata OX=3662 GN=LOC1114383...	[more]
A0A3S3NSS0	3.9e-62	90.85	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A6A5N1Q8	2.4e-59	88.03	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lal_00033867 PE=3 SV=1	[more]
A0A443Q5I9	7.6e-58	86.62	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]
A0A443Q433	4.9e-57	86.62	30S ribosomal protein S12, chloroplastic OS=Cinnamomum micranthum f. kanehirae O...	[more]

BLAST of CmaCh00G000410 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022932068.1	1.4e-69	97.20	uncharacterized protein LOC111438394 [Cucurbita moschata] >XP_023520570.1 unchar...	[more]
XP_038896566.1	1.1e-66	94.41	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
XP_038902483.1	6.6e-64	92.31	30S ribosomal protein S12, chloroplastic-like [Benincasa hispida]	[more]
RWR98012.1	8.1e-62	90.85	LOW QUALITY PROTEIN: 30S ribosomal protein S12, chloroplastic [Cinnamomum micran...	[more]
KAF1876942.1	4.9e-59	88.03	hypothetical protein Lal_00033867 [Lupinus albus]	[more]

BLAST of CmaCh00G000410 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00065.1	1.4e-35	94.81	ribosomal protein S12A	[more]
ATCG01230.1	1.4e-35	94.81	ribosomal protein S12B	[more]
ATCG00905.1	1.4e-35	94.81	ribosomal protein S12C	[more]
AT2G07675.1	6.7e-22	61.54	Ribosomal protein S12/S23 family protein	[more]
ATMG00980.1	6.7e-22	61.54	Ribosomal protein S12/S23 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima (Rimu) v1.1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006032	Ribosomal protein S12/S23	PRINTS	PR01034	RIBOSOMALS12	coord: 83..102 score: 68.61 coord: 102..119 score: 88.58 coord: 119..135 score: 64.3 coord: 67..82 score: 85.07 coord: 135..143 score: 32.37
IPR006032	Ribosomal protein S12/S23	PFAM	PF00164	Ribosom_S12_S23	coord: 58..138 e-value: 1.1E-27 score: 95.9
IPR006032	Ribosomal protein S12/S23	PANTHER	PTHR11652	30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER	coord: 33..142
None	No IPR available	GENE3D	2.40.50.140		coord: 11..142 e-value: 8.9E-44 score: 150.3
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 16..36
None	No IPR available	PANTHER	PTHR11652:SF52	30S RIBOSOMAL PROTEIN S12-B	coord: 33..142
IPR005679	Ribosomal protein S12, bacterial-type	TIGRFAM	TIGR00981	TIGR00981	coord: 51..140 e-value: 7.3E-44 score: 146.6
IPR005679	Ribosomal protein S12, bacterial-type	CDD	cd03368	Ribosomal_S12	coord: 64..135 e-value: 2.51537E-50 score: 154.214
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 61..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh00G000410.1	CmaCh00G000410.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0015935	small ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome