CmUC11G211330 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G211330
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
Description30S ribosomal protein S12, chloroplastic
LocationCmU531Chr11: 7765341 .. 7766004 (+)
RNA-Seq ExpressionCmUC11G211330
SyntenyCmUC11G211330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGTAAACTCTTGAAATAGCGGAAGCTCGAATTATCCGAAGAGGATCGCTTAACCGTAGCACGAGCACGAAAAATTGAGCCTTTCTTATCACAACCTTTTTTCGTAGCAGAAGTATTTACTGGTTCCCCGGGGAAATACGTTGGCCTAGCAGAAACAATTAAAAAAAGGGGGTTCAAATCATTTTATCGACATGAGTGTTCTATATCGAAAAAAAAATCCCAACTATTTGAAACGATTTATGTATTAACATAGTAGTAGAAAGAGTACCATGCTGCGTCCGGACTTCAAACGGTTTAGCTTTAACCATGTTAATAGTCCCACATTATTGGTTGATAGAGAATCAAATCTGCCTTACGTAAAGTTGCCAGAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

mRNA sequence

ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Coding sequence (CDS)

ATGGCTCTGATGGGTGGTTTTGCTAGAATAGGCAATAATGAGGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAAGTACGCTTAACCTCGGGATTTGAAATCACTGCTTATATACCTGGTATTGGCCATAATTTACAAGAACATTCTGTAGTCTTAGTAAGAGGGGGAAGGGTTAAGGATTTACCCGGTGTGAGATATCACATTGTTCGAGGAACCCTAGATGCTGTCGGAGTAAAGGATCGTCAACAAGGGCGTTCTAGTGCGTTGTAG

Protein sequence

MALMGGFARIGNNEVTILVNDAEKASDIDPQEAQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSSAL
Homology
[Close]
BLAST of CmUC11G211330 vs. NCBI nr
Match: YP_008815054.1 (ribosomal protein S12 [Metapanax delavayi] >AGG39190.1 ribosomal protein S12 [Metapanax delavayi])

HSP 1 Score: 136.7 bits (343), Expect = 1.1e-28
Identity = 71/98 (72.45%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDAEKASDIDPQE--------AQVRLTSGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRLTSGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 97
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 158

[Close]
BLAST of CmUC11G211330 vs. NCBI nr
Match: QWW89705.1 (ribosomal protein S12 [Zamia fischeri] >QWW89706.1 ribosomal protein S12 [Zamia fischeri])

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 11  GNNEVTILVNDAEKASDIDPQEAQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 51  GNLSVNFSTTTPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 110

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 111 PGVRYHIVRGTLDAVGVKDRQQGRSSAL 138

[Close]
BLAST of CmUC11G211330 vs. NCBI nr
Match: AEQ37137.1 (ribosomal protein S12 [Ginkgo biloba] >AEQ37174.1 ribosomal protein S12 [Ginkgo biloba])

HSP 1 Score: 136.0 bits (341), Expect = 1.8e-28
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 11  GNNEVTILVNDAEKASDIDPQEAQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 50  GNLSVNFSTTTPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 109

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 110 PGVRYHIVRGTLDAVGVKDRQQGRSSAL 137

[Close]
BLAST of CmUC11G211330 vs. NCBI nr
Match: YP_008815009.1 (ribosomal protein S12 [Metapanax delavayi] >AGG39177.1 ribosomal protein S12 [Metapanax delavayi])

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-28
Identity = 70/97 (72.16%), Postives = 74/97 (76.29%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDAEKASDIDPQE--------AQVRLTSGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRLTSGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 96
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 157

[Close]
BLAST of CmUC11G211330 vs. NCBI nr
Match: KAG6621065.1 (hypothetical protein I3842_Q037900, partial [Carya illinoinensis])

HSP 1 Score: 134.8 bits (338), Expect = 4.0e-28
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 11  GNNEVTILVNDAEKASDIDPQEAQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 13  GNLSVNFSTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 72

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 73  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 100

[Close]
BLAST of CmUC11G211330 vs. ExPASy Swiss-Prot
Match: Q1KXY0 (30S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRSSAL 99
           GRSSAL
Sbjct: 113 GRSSAL 118

[Close]
BLAST of CmUC11G211330 vs. ExPASy Swiss-Prot
Match: Q332V3 (30S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRSSAL 99
           GRSSAL
Sbjct: 113 GRSSAL 118

[Close]
BLAST of CmUC11G211330 vs. ExPASy Swiss-Prot
Match: Q0G9J5 (30S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.8e-30
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHN QEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNSQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRSSAL 99
           GRSSAL
Sbjct: 113 GRSSAL 118

[Close]
BLAST of CmUC11G211330 vs. ExPASy Swiss-Prot
Match: A4QJV5 (30S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-A PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of CmUC11G211330 vs. ExPASy Swiss-Prot
Match: A4QJX7 (30S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN=rps12-B PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 2.9e-29
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 54  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 113

Query: 93  GRS 96
           GRS
Sbjct: 114 GRS 116

[Close]
BLAST of CmUC11G211330 vs. ExPASy TrEMBL
Match: U5IPK6 (Ribosomal protein S12 OS=Metapanax delavayi OX=133946 GN=rps12 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 5.1e-29
Identity = 71/98 (72.45%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDAEKASDIDPQE--------AQVRLTSGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRLTSGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 97
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRSS 158

[Close]
BLAST of CmUC11G211330 vs. ExPASy TrEMBL
Match: I6N9H0 (Ribosomal protein S12 OS=Ginkgo biloba OX=3311 GN=rps12 PE=3 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 8.7e-29
Identity = 69/88 (78.41%), Postives = 73/88 (82.95%), Query Frame = 0 

Query: 11  GNNEVTILVNDAEKASDIDPQEAQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 70
           GN  V       +K +    + A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL
Sbjct: 50  GNLSVNFSTTTPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDL 109

Query: 71  PGVRYHIVRGTLDAVGVKDRQQGRSSAL 99
           PGVRYHIVRGTLDAVGVKDRQQGRSSAL
Sbjct: 110 PGVRYHIVRGTLDAVGVKDRQQGRSSAL 137

[Close]
BLAST of CmUC11G211330 vs. ExPASy TrEMBL
Match: U5IQP1 (30S ribosomal protein S12, chloroplastic OS=Metapanax delavayi OX=133946 GN=rps12 PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 70/97 (72.16%), Postives = 74/97 (76.29%), Query Frame = 0 

Query: 7   FARIGNNEVTILVNDAEKASDIDPQE--------AQVRLTSGFEITAYIPGIGHNLQEHS 66
           + RIG N    L N   K   I P++        A+VRLTSGFEITAYIPGIGHN QEHS
Sbjct: 61  YRRIGYNRKRTLFNSVSKKKTITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNSQEHS 120

Query: 67  VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 96
           VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS
Sbjct: 121 VVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQGRS 157

[Close]
BLAST of CmUC11G211330 vs. ExPASy TrEMBL
Match: A0A6A1W639 (30S ribosomal protein S12, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR3G002923 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 2.5e-28
Identity = 67/80 (83.75%), Postives = 71/80 (88.75%), Query Frame = 0 

Query: 19  VNDAEKASDIDPQEAQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 78
           V   + + D +   A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV
Sbjct: 153 VRGYKSSLDRESPVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIV 212

Query: 79  RGTLDAVGVKDRQQGRSSAL 99
           RGTLDAVGVKDRQQGRSSAL
Sbjct: 213 RGTLDAVGVKDRQQGRSSAL 232

[Close]
BLAST of CmUC11G211330 vs. ExPASy TrEMBL
Match: A0A1B1W4W7 (Ribosomal protein S12 OS=Arabidopsis thaliana OX=3702 GN=rps12 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 3.3e-28
Identity = 68/81 (83.95%), Postives = 72/81 (88.89%), Query Frame = 0 

Query: 18  LVNDAEKASDIDPQEAQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 77
           LV   +K +    + A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI
Sbjct: 41  LVITPKKPNSALRKVARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHI 100

Query: 78  VRGTLDAVGVKDRQQGRSSAL 99
           VRGTLDAVGVKDRQQGRSSAL
Sbjct: 101 VRGTLDAVGVKDRQQGRSSAL 121

[Close]
BLAST of CmUC11G211330 vs. TAIR 10
Match: ATCG00065.1 (ribosomal protein S12A )

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-30
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of CmUC11G211330 vs. TAIR 10
Match: ATCG01230.1 (ribosomal protein S12B )

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-30
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of CmUC11G211330 vs. TAIR 10
Match: ATCG00905.1 (ribosomal protein S12C )

HSP 1 Score: 129.0 bits (323), Expect = 2.0e-30
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ
Sbjct: 53  ARVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of CmUC11G211330 vs. TAIR 10
Match: AT2G07675.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Sbjct: 53  AKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRR 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

[Close]
BLAST of CmUC11G211330 vs. TAIR 10
Match: ATMG00980.1 (Ribosomal protein S12/S23 family protein )

HSP 1 Score: 82.8 bits (203), Expect = 1.7e-16
Identity = 37/63 (58.73%), Postives = 49/63 (77.78%), Query Frame = 0 

Query: 33  AQVRLTSGFEITAYIPGIGHNLQEHSVVLVRGGRVKDLPGVRYHIVRGTLDAVGVKDRQQ 92
           A+VRL++  +I A+IPG GHN QEHS VL+RGGRVKD PGV+ H +RG  D +G+  R++
Sbjct: 53  AKVRLSNRHDIFAHIPGEGHNSQEHSTVLIRGGRVKDSPGVKSHCIRGVKDLMGIPGRRR 112

Query: 93  GRS 96
           GRS
Sbjct: 113 GRS 115

The following BLAST results are available for this feature:
BLAST of CmUC11G211330 vs. NCBI nr
Match NameE-valueIdentityDescription
YP_008815054.11.1e-2872.45ribosomal protein S12 [Metapanax delavayi] >AGG39190.1 ribosomal protein S12 [Me... [more]
QWW89705.11.8e-2878.41ribosomal protein S12 [Zamia fischeri] >QWW89706.1 ribosomal protein S12 [Zamia ... [more]
AEQ37137.11.8e-2878.41ribosomal protein S12 [Ginkgo biloba] >AEQ37174.1 ribosomal protein S12 [Ginkgo ... [more]
YP_008815009.13.1e-2872.16ribosomal protein S12 [Metapanax delavayi] >AGG39177.1 ribosomal protein S12 [Me... [more]
KAG6621065.14.0e-2878.41hypothetical protein I3842_Q037900, partial [Carya illinoinensis][more]
BLAST of CmUC11G211330 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q1KXY05.8e-3096.9730S ribosomal protein S12, chloroplastic OS=Helianthus annuus OX=4232 GN=rps12-A... [more]
Q332V35.8e-3096.9730S ribosomal protein S12, chloroplastic OS=Lactuca sativa OX=4236 GN=rps12-A PE... [more]
Q0G9J55.8e-3096.9730S ribosomal protein S12, chloroplastic OS=Liriodendron tulipifera OX=3415 GN=r... [more]
A4QJV52.9e-2998.4130S ribosomal protein S12-A, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
A4QJX72.9e-2998.4130S ribosomal protein S12-B, chloroplastic OS=Olimarabidopsis pumila OX=74718 GN... [more]
BLAST of CmUC11G211330 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
U5IPK65.1e-2972.45Ribosomal protein S12 OS=Metapanax delavayi OX=133946 GN=rps12 PE=3 SV=1[more]
I6N9H08.7e-2978.41Ribosomal protein S12 OS=Ginkgo biloba OX=3311 GN=rps12 PE=3 SV=1[more]
U5IQP11.5e-2872.1630S ribosomal protein S12, chloroplastic OS=Metapanax delavayi OX=133946 GN=rps1... [more]
A0A6A1W6392.5e-2883.7530S ribosomal protein S12, chloroplastic OS=Morella rubra OX=262757 GN=CJ030_MR3... [more]
A0A1B1W4W73.3e-2883.95Ribosomal protein S12 OS=Arabidopsis thaliana OX=3702 GN=rps12 PE=3 SV=1[more]
BLAST of CmUC11G211330 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00065.12.0e-3098.41ribosomal protein S12A [more]
ATCG01230.12.0e-3098.41ribosomal protein S12B [more]
ATCG00905.12.0e-3098.41ribosomal protein S12C [more]
AT2G07675.11.7e-1658.73Ribosomal protein S12/S23 family protein [more]
ATMG00980.11.7e-1658.73Ribosomal protein S12/S23 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006032Ribosomal protein S12/S23PRINTSPR01034RIBOSOMALS12coord: 74..90
score: 64.3
coord: 38..57
score: 75.14
coord: 22..37
score: 29.51
coord: 57..74
score: 88.58
coord: 90..98
score: 32.37
IPR006032Ribosomal protein S12/S23PFAMPF00164Ribosom_S12_S23coord: 33..93
e-value: 1.6E-18
score: 66.4
IPR006032Ribosomal protein S12/S23PANTHERPTHR1165230S RIBOSOMAL PROTEIN S12 FAMILY MEMBERcoord: 33..97
NoneNo IPR availableGENE3D2.40.50.140coord: 23..97
e-value: 5.7E-33
score: 115.3
NoneNo IPR availablePANTHERPTHR11652:SF5230S RIBOSOMAL PROTEIN S12-Bcoord: 33..97
IPR005679Ribosomal protein S12, bacterial-typeTIGRFAMTIGR00981TIGR00981coord: 31..95
e-value: 3.1E-35
score: 118.7
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILY50249Nucleic acid-binding proteinscoord: 33..95

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G211330.1CmUC11G211330.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015935 small ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome