CmUC11G211260 (gene) Watermelon (USVL531) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGAATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCCTTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCCAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAAGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAAGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTTAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTCAAAAGTATAAAAAAGAAATTCTTTGTATATACATTCGAAGCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAATCTTCTGGTATCTCACTCAGCTAAGTAATTATATGACACCGGTATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTTAAACCTATTGTCGAACCTCAATAGCATAGCTCTTTCCCGGGTCTCCTTTCGAAGGAGAAAGGCCTTCGCATTCCTAATCCGGTGGGGGGCCGGACGGCTTTGTTTGCCCCAGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGTCGGATCCTAGATGTAGAAATATAAGAAGGAAGATCCCCTTCTCCATCGAAAGAAATGATATTTTCGCGGATACAACACATACAAAATTAACCAAATTTGTTATTATATGTTTGCTCTAGTTTTGTTGTTTTTGATGTTGAAACAGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCATCTTTATAGAAGCTTTACTTTTTGTGCTTATCCTAATTGTCGCGAACTCAGACTCTTTTTACGTCCCCCCCGGAAGAGTTTACTGCTAGAAATCGAAGTGATTGAAAGATATGAGATCCTTCTATCTATTCTATAAGCAAAATAGAAAGTGGTCCTGACCAAATAGTCGAATCTATCTCTCAGCGATTGATTCTTTTCTCCACTAATAACCCCTTCCCAACCAGCCCGCCCGATCGATTTTGTAAGATCGGCTAATTCAAAGGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGTATGTTCTCGAAAGGGGCGGTCAAAAAAAATGAATTGTTGTTTTAAGTAATCGTCAAAACAACAATTCAGTTCAATTCGAATCGACTAATCCGGTATATTTTCCACATTGATAGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTAGAATGGTCTTAG ATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGAATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCCTTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCCAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAAGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAAGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTAGAATGGTCTTAG ATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGAATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCCTTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCCAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAAGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAAGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTAGAATGGTCTTAG MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRLANRIPAQRHCLCAPYRSRGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTCHNDSIPSSSNDTRVNLVRSCRNVPRKGQRGNQKIPAFDATLCRPEMLLTSWSGTGVAHLLELCGRLENGSSKLPRGRPAKSQTKLYGISFFIIGKGGRAPGSTFMFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS Homology
BLAST of CmUC11G211260 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria]) HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo]) HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria]) HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. NCBI nr
Match: YP_009560826.1 (RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >YP_009753696.1 RNA polymerase beta' subunit [Trichosanthes nervifolia] >QAB33258.1 RpoC1 [Trichosanthes kirilowii] >QIT04799.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >QIT05307.1 RNA polymerase beta' subunit [Trichosanthes nervifolia]) HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. NCBI nr
Match: AHM91152.1 (RNA polymerase beta, partial [Lagenaria siceraria]) HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3) HSP 1 Score: 469.2 bits (1206), Expect = 6.3e-131 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: A6MM27 (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 463.4 bits (1191), Expect = 3.5e-129 Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: Q8S8Y0 (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2) HSP 1 Score: 460.3 bits (1183), Expect = 2.9e-128 Identity = 226/233 (97.00%), Postives = 229/233 (98.28%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: P11705 (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 459.9 bits (1182), Expect = 3.8e-128 Identity = 226/233 (97.00%), Postives = 230/233 (98.71%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: B1NWE1 (DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 458.8 bits (1179), Expect = 8.5e-128 Identity = 226/233 (97.00%), Postives = 229/233 (98.28%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1) HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128 Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein ) HSP 1 Score: 455.7 bits (1171), Expect = 5.1e-128 Identity = 224/233 (96.14%), Postives = 229/233 (98.28%), Query Frame = 0
BLAST of CmUC11G211260 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein ) HSP 1 Score: 211.8 bits (538), Expect = 1.3e-54 Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 0
BLAST of CmUC11G211260 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 ) HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22 Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 0
BLAST of CmUC11G211260 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 ) HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22 Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 0
BLAST of CmUC11G211260 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit ) HSP 1 Score: 101.7 bits (252), Expect = 1.9e-21 Identity = 72/245 (29.39%), Postives = 115/245 (46.94%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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