CmUC11G211260 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G211260
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionDNA-directed RNA polymerase subunit beta'
LocationCmU531Chr11: 7726072 .. 7728858 (-)
RNA-Seq ExpressionCmUC11G211260
SyntenyCmUC11G211260
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGAATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCCTTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCCAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAAGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAAGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGGTATAATCCATCTAATCGCAAAAATCATAAAAATGAAAAAATTTACAATAATAACTATAAATATACGAAAGAACCCTTTTTTTGTAATTCCTATGATGCAATTGGAGCTTATCGCCAGAAAAGGATCAATTTAGATAGTCCTTTGTGGCTCCGATGGCGACTAGATCAACGCGTTATTGCTTTAAGAGAAGCCCCTATCGAAGTTCACTATGAATCTTTGGGTACCCATCATGAGATTTATGGGTCCTATCTAATAGTCAAAAGTATAAAAAAGAAATTCTTTGTATATACATTCGAAGCACTGTTGGTCATATTTCTCTTTATCGAGAAATCGAAGAGGCTATACAAGGATTTTGCCGGGCCTGCTCATATGGTACCTAATCTTCTGGTATCTCACTCAGCTAAGTAATTATATGACACCGGTATGAATTTTGTTCTCTCCGGTTCAACTAGGACCATAGGTCCTGAATTTCTACGCGAATCAAGATCGAGAAAAGGAAGTTTTCTAATCATTGACTTAAACCTATTGTCGAACCTCAATAGCATAGCTCTTTCCCGGGTCTCCTTTCGAAGGAGAAAGGCCTTCGCATTCCTAATCCGGTGGGGGGCCGGACGGCTTTGTTTGCCCCAGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGTCGGATCCTAGATGTAGAAATATAAGAAGGAAGATCCCCTTCTCCATCGAAAGAAATGATATTTTCGCGGATACAACACATACAAAATTAACCAAATTTGTTATTATATGTTTGCTCTAGTTTTGTTGTTTTTGATGTTGAAACAGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCATCTTTATAGAAGCTTTACTTTTTGTGCTTATCCTAATTGTCGCGAACTCAGACTCTTTTTACGTCCCCCCCGGAAGAGTTTACTGCTAGAAATCGAAGTGATTGAAAGATATGAGATCCTTCTATCTATTCTATAAGCAAAATAGAAAGTGGTCCTGACCAAATAGTCGAATCTATCTCTCAGCGATTGATTCTTTTCTCCACTAATAACCCCTTCCCAACCAGCCCGCCCGATCGATTTTGTAAGATCGGCTAATTCAAAGGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGTATGTTCTCGAAAGGGGCGGTCAAAAAAAATGAATTGTTGTTTTAAGTAATCGTCAAAACAACAATTCAGTTCAATTCGAATCGACTAATCCGGTATATTTTCCACATTGATAGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTAGAATGGTCTTAG

mRNA sequence

ATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGAATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCCTTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCCAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAAGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAAGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTAGAATGGTCTTAG

Coding sequence (CDS)

ATGTGTCAGGAGAAATTGGTACAAGAAGCTGTGAATACACTTCTTGATAATGGAATCCGCGGACAACCAATGAGGGATGGCCATAATAAGGTTTACAAGTCGTTTTCCGATGTAATTGAAGGCAAAGAGGGAAGATTTCGGGAGACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTAGGTCCCTCACTTTCCTTACATCGATGTGGATTGCCTCGCGAAATCGCAATAGAGCTTTTCCAGACATTTTTAATTCGTGGTCTAATTCGACAACATTTTGCTTCCAACATAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATTAGGCATCCAGGCCTTCCAACCTATTTTAGTGGAAGGACGTGCTATTTGTTTACATCCATTAGTTTGTAAAGGATTCAATGCCGACTTTGATGGGGATCAAATGGCTGTTCATGTACCTTTATCTTTGGAAGCTCAAGCAGAGGCGCGTTTACTTATGTTTTCTCATATGAATCTCTTGTCTTCAGCTATTGGGGATCCCATTTCTGTACCAACTCAAGATATGCTTATTGGACTCTATGTATTAACGAGCGGGAATCGCCGAGGTATTTGTGCAAATCGCTTGGCGAATCGCATCCCCGCGCAACGACATTGTTTGTGCGCCCCTTACCGTTCTCGCGGACCCGATGAAAAAAATGGGATCACTTCTTATGGACTCGTTGAGAATGATTCTGATCTAGTTCATGGCCTATTAGAAGTAGAAGGCGCTCTGTTGGGATCCTCACGGACAGAAAAAGATTGCAGTCGATTTGATAATGATCGAGTGACGTGCCATAATGATTCAATTCCTAGTAGTAGCAATGATACAAGGGTTAATCTGGTCCGAAGTTGTCGGAACGTGCCTAGAAAAGGTCAGCGGGGCAATCAAAAAATACCTGCTTTTGACGCTACGCTGTGCCGACCCGAGATGCTACTCACGAGCTGGTCAGGGACAGGAGTCGCACACTTACTTGAGCTGTGCGGGAGACTGGAGAATGGGTCGAGTAAACTCCCCCGGGGCCGGCCGGCAAAATCACAGACGAAGCTTTATGGTATTTCTTTTTTTATTATTGGAAAAGGAGGGAGGGCGCCTGGGAGTACGTTTATGTTTCTGCTTTACGAATATGATATTTTCTGGGTTTTTCTGATAATATCAAGTGTTATTCCTATTTTGGCATTTCTAATTTCTGGAGTTTTAGCCCCTCTTAGCAAAGAGCCAGAGAAACTTTCGAGTTATGAATCGGGAATAGAACCAATGGGCGATGCTTGGGTACAATTTAGAATCCGTTATTATATGTTTGCTCTAGTTTTTGTTGTTTTTGATGTTGAAACGGTTTTTCTTTATCCATGGGCAATGAGTTTTGATGTATTAGGGGTATCCGTCTTTATAGAAGCTTTAATTTTCGTGCTTATCCTAATTGTCGGGTTAGTTTATGCATGGCGAAAAGGAGCATTAGAATGGTCTTAG

Protein sequence

MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANRLANRIPAQRHCLCAPYRSRGPDEKNGITSYGLVENDSDLVHGLLEVEGALLGSSRTEKDCSRFDNDRVTCHNDSIPSSSNDTRVNLVRSCRNVPRKGQRGNQKIPAFDATLCRPEMLLTSWSGTGVAHLLELCGRLENGSSKLPRGRPAKSQTKLYGISFFIIGKGGRAPGSTFMFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRIRYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS
Homology
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BLAST of CmUC11G211260 vs. NCBI nr
Match: AHM88912.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

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BLAST of CmUC11G211260 vs. NCBI nr
Match: ASY96794.1 (RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97316.1 RNA polymerase beta' subunit [Cucumis melo var. flexuosus] >ASY97055.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo] >ASY97229.1 RNA polymerase beta' subunit [Cucumis melo var. cantalupo])

HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]
BLAST of CmUC11G211260 vs. NCBI nr
Match: AHM88970.1 (RNA polymerase beta [Lagenaria siceraria])

HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. NCBI nr
Match: YP_009560826.1 (RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >YP_009753696.1 RNA polymerase beta' subunit [Trichosanthes nervifolia] >QAB33258.1 RpoC1 [Trichosanthes kirilowii] >QIT04799.1 RNA polymerase beta' subunit [Trichosanthes tricuspidata] >QIT05307.1 RNA polymerase beta' subunit [Trichosanthes nervifolia])

HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. NCBI nr
Match: AHM91152.1 (RNA polymerase beta, partial [Lagenaria siceraria])

HSP 1 Score: 469.2 bits (1206), Expect = 4.8e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: Q4VZP2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=3)

HSP 1 Score: 469.2 bits (1206), Expect = 6.3e-131
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: A6MM27 (DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 463.4 bits (1191), Expect = 3.5e-129
Identity = 229/233 (98.28%), Postives = 231/233 (99.14%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHVASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: Q8S8Y0 (DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1 PE=3 SV=2)

HSP 1 Score: 460.3 bits (1183), Expect = 2.9e-128
Identity = 226/233 (97.00%), Postives = 229/233 (98.28%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQP+LVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPVLVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQ EARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGIC NR
Sbjct: 502 SLEAQVEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICVNR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: P11705 (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 459.9 bits (1182), Expect = 3.8e-128
Identity = 226/233 (97.00%), Postives = 230/233 (98.71%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAK KIREKEPIVW+IL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKRKIREKEPIVWKIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLY+LTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYILTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match: B1NWE1 (DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 458.8 bits (1179), Expect = 8.5e-128
Identity = 226/233 (97.00%), Postives = 229/233 (98.28%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRET+LGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETMLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQ F+IRGLIRQH ASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQIFVIRGLIRQHLASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
            EVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 HEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A218KG20 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=319220 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A6M3S6B8 (DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A1X9Q1T5 (DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A249RZJ2 (DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=3658 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match: A0A1P8LE65 (DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 2.3e-128
Identity = 232/233 (99.57%), Postives = 233/233 (100.00%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 323 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 382

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL
Sbjct: 383 SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 442

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 443 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 502

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR
Sbjct: 503 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 555

[Close]
BLAST of CmUC11G211260 vs. TAIR 10
Match: ATCG00180.1 (DNA-directed RNA polymerase family protein )

HSP 1 Score: 455.7 bits (1171), Expect = 5.1e-128
Identity = 224/233 (96.14%), Postives = 229/233 (98.28%), Query Frame = 0 

Query: 1   MCQEKLVQEAVNTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 60
           MCQEKLVQEAV+TLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR
Sbjct: 322 MCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGR 381

Query: 61  SVIVVGPSLSLHRCGLPREIAIELFQTFLIRGLIRQHFASNIGVAKSKIREKEPIVWEIL 120
           SVIVVGPSLSLHRCGLPREIAIELFQTF+IRGLIRQH ASNIGVAKS+IREK+PIVWEIL
Sbjct: 382 SVIVVGPSLSLHRCGLPREIAIELFQTFVIRGLIRQHLASNIGVAKSQIREKKPIVWEIL 441

Query: 121 QEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPL 180
           QEVMQGHPVLLNRAPTLHRLGIQ+FQPILVEGR ICLHPLVCKGFNADFDGDQMAVHVPL
Sbjct: 442 QEVMQGHPVLLNRAPTLHRLGIQSFQPILVEGRTICLHPLVCKGFNADFDGDQMAVHVPL 501

Query: 181 SLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIGLYVLTSGNRRGICANR 234
           SLEAQAEARLLMFSHMNLLS AIGDPISVPTQDMLIGLYVLTSG RRGICANR
Sbjct: 502 SLEAQAEARLLMFSHMNLLSPAIGDPISVPTQDMLIGLYVLTSGTRRGICANR 554

[Close]
BLAST of CmUC11G211260 vs. TAIR 10
Match: ATCG00440.1 (NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein )

HSP 1 Score: 211.8 bits (538), Expect = 1.3e-54
Identity = 107/120 (89.17%), Postives = 114/120 (95.00%), Query Frame = 0 

Query: 408 MFLLYEYDIFWVFLIISSVIPILAFLISGVLAPLSKEPEKLSSYESGIEPMGDAWVQFRI 467
           MFLLYEYDIFW FL+ISS IP+LAFLISGVL+P+ K PEKLSSYESGIEP+GDAW+QFRI
Sbjct: 1   MFLLYEYDIFWAFLLISSAIPVLAFLISGVLSPIRKGPEKLSSYESGIEPIGDAWLQFRI 60

Query: 468 RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSVFIEALIFVLILIVGLVYAWRKGALEWS 527
           RYYMFALVFVVFDVETVFLYPWAMSFDVLGVS FIEA IFVLILI+GLVYAWRKGALEWS
Sbjct: 61  RYYMFALVFVVFDVETVFLYPWAMSFDVLGVSAFIEAFIFVLILILGLVYAWRKGALEWS 120

[Close]
BLAST of CmUC11G211260 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22
Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 0 

Query: 39  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELF 98
           ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  
Sbjct: 346 LKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL 405

Query: 99  QTFLIRGLIRQHFASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRA 158
           +  +  G  +   A N           +G  + +I ++  I   + + + +G  VL NR 
Sbjct: 406 RQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQ 465

Query: 159 PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFS 218
           P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM  
Sbjct: 466 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGV 525

Query: 219 HMNLLSSAIGDPISVPTQDMLIGLYVLT 223
             NL +   G+ +   TQD L   +++T
Sbjct: 526 QNNLCTPKNGEILVASTQDFLTSSFLIT 553

[Close]
BLAST of CmUC11G211260 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 105.1 bits (261), Expect = 1.7e-22
Identity = 66/208 (31.73%), Postives = 106/208 (50.96%), Query Frame = 0 

Query: 39  IEGKEGRFRETLLGKRVDYSGRSVIVVGPSLSLHRCGLPREIA-------------IELF 98
           ++GK GRFR  L GKRV+++GR+VI   P+L +   G+P  +A             IE  
Sbjct: 356 LKGKGGRFRANLSGKRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKL 415

Query: 99  QTFLIRGLIRQHFASN-----------IGVAKSKIREKEPIVWEILQEVMQGHPVLLNRA 158
           +  +  G  +   A N           +G  + +I ++  I   + + + +G  VL NR 
Sbjct: 416 RQCVRNGPNKYPGARNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEGDVVLFNRQ 475

Query: 159 PTLHRLGIQAFQPILVEGRAICLHPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFS 218
           P+LHR+ I   +  ++  R +  +  VC  +NADFDGD+M +HVP + EA+ EA  LM  
Sbjct: 476 PSLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGV 535

Query: 219 HMNLLSSAIGDPISVPTQDMLIGLYVLT 223
             NL +   G+ +   TQD L   +++T
Sbjct: 536 QNNLCTPKNGEILVASTQDFLTSSFLIT 563

[Close]
BLAST of CmUC11G211260 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 101.7 bits (252), Expect = 1.9e-21
Identity = 72/245 (29.39%), Postives = 115/245 (46.94%), Query Frame = 0 

Query: 5   KLVQEAVNTLLDNGIRGQP-MRDGHNKVYKSFSDVIEGKEGRFRETLLGKRVDYSGRSVI 64
           +L+Q  + T  DN + GQP       +  KS    ++ KEGR R  L+GKRVD+S R+VI
Sbjct: 305 QLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVI 364

Query: 65  VVGPSLSLHRCGLPREIAIEL--------FQTFLIRGLI--RQHFASNIGVAKSKIREKE 124
              P++++   G+P  IA+ L        +    ++ L+    H       AK  IR+  
Sbjct: 365 TPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYIIRDDG 424

Query: 125 ----------------PIVWEILQEVMQGHPVLLNRAPTLHRLGIQAFQPILVEGRAICL 184
                            + +++ + +  G  VL NR P+LH++ I   +  ++      L
Sbjct: 425 QRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYSTFRL 484

Query: 185 HPLVCKGFNADFDGDQMAVHVPLSLEAQAEARLLMFSHMNLLSSAIGDPISVPTQDMLIG 223
           +  V   +NADFDGD+M +HVP S E +AE   LM     ++S     P+    QD L+G
Sbjct: 485 NLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDTLLG 544

The following BLAST results are available for this feature:
BLAST of CmUC11G211260 vs. NCBI nr
Match NameE-valueIdentityDescription
AHM88912.14.8e-12899.57RNA polymerase beta [Lagenaria siceraria][more]
ASY96794.14.8e-12899.57RNA polymerase beta' subunit [Cucumis melo var. momordica] >ASY96968.1 RNA polym... [more]
AHM88970.14.8e-12899.57RNA polymerase beta [Lagenaria siceraria][more]
YP_009560826.14.8e-12899.57RpoC1 [Trichosanthes kirilowii] >YP_009752403.1 RNA polymerase beta' subunit [Tr... [more]
AHM91152.14.8e-12899.57RNA polymerase beta, partial [Lagenaria siceraria][more]
BLAST of CmUC11G211260 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZP26.3e-13199.57DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE... [more]
A6MM273.5e-12998.28DNA-directed RNA polymerase subunit beta' OS=Buxus microphylla OX=153571 GN=rpoC... [more]
Q8S8Y02.9e-12897.00DNA-directed RNA polymerase subunit beta' OS=Atropa belladonna OX=33113 GN=rpoC1... [more]
P117053.8e-12897.00DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea OX=3562 GN=rpoC1 ... [more]
B1NWE18.5e-12897.00DNA-directed RNA polymerase subunit beta' OS=Manihot esculenta OX=3983 GN=rpoC1 ... [more]
BLAST of CmUC11G211260 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A218KG202.3e-12899.57DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus var. hardwickii OX=... [more]
A0A6M3S6B82.3e-12899.57DNA-directed RNA polymerase subunit beta' OS=Trichosanthes kirilowii OX=3677 GN=... [more]
A0A1X9Q1T52.3e-12899.57DNA-directed RNA polymerase subunit beta' OS=Cucumis sativus OX=3659 GN=rpoC1 PE... [more]
A0A249RZJ22.3e-12899.57DNA-directed RNA polymerase subunit beta' OS=Cucumis melo var. cantalupensis OX=... [more]
A0A1P8LE652.3e-12899.57DNA-directed RNA polymerase subunit gamma OS=Citrullus mucosospermus OX=519315 G... [more]
BLAST of CmUC11G211260 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00180.15.1e-12896.14DNA-directed RNA polymerase family protein [more]
ATCG00440.11.3e-5489.17NADH:ubiquinone/plastoquinone oxidoreductase, chain 3 protein [more]
AT5G60040.11.7e-2231.73nuclear RNA polymerase C1 [more]
AT5G60040.21.7e-2231.73nuclear RNA polymerase C1 [more]
AT4G35800.11.9e-2129.39RNA polymerase II large subunit [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 1..222
e-value: 1.4E-103
score: 360.1
IPR000440NADH:ubiquinone/plastoquinone oxidoreductase, chain 3PFAMPF00507Oxidored_q4coord: 430..526
e-value: 5.4E-35
score: 119.5
IPR042102RNA polymerase Rpb1, domain 3 superfamilyGENE3D1.10.274.100RNA polymerase Rpb1, domain 3coord: 197..262
e-value: 1.1E-8
score: 37.3
IPR038430NADH:ubiquinone oxidoreductase, subunit 3 superfamilyGENE3D1.20.58.1610NADH:ubiquinone/plastoquinone oxidoreductase, chain 3coord: 401..527
e-value: 9.8E-44
score: 150.3
NoneNo IPR availableGENE3D2.40.40.20coord: 40..193
e-value: 1.7E-46
score: 159.3
NoneNo IPR availableGENE3D1.10.40.90coord: 81..125
e-value: 2.9E-16
score: 61.3
NoneNo IPR availablePANTHERPTHR19376:SF54DNA-DIRECTED RNA POLYMERASE SUBUNIT BETA'coord: 1..267
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 1..267
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 3..226
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 108..192
e-value: 1.2E-26
score: 93.9
coord: 52..99
e-value: 3.2E-7
score: 30.7
IPR023043NAD(P)H-quinone oxidoreductase subunit 3, bacterial/plastidHAMAPMF_01394NDH1_NuoAcoord: 410..527
score: 19.967321

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G211260.1CmUC11G211260.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0009507 chloroplast
molecular_function GO:0003677 DNA binding
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0008137 NADH dehydrogenase (ubiquinone) activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H