CmUC11G211100 (gene) Watermelon (USVL531) v1

Overview
NameCmUC11G211100
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionRibulose bisphosphate carboxylase large chain
LocationCmU531Chr11: 7697848 .. 7701963 (-)
RNA-Seq ExpressionCmUC11G211100
SyntenyCmUC11G211100
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATTCCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACTGTTACTCGGGCATCTTTACCCTTGGTCAGCATTTGGTACTCTCTCGATAGCTTCTCTCGTTCACTTCAAGCCTTTGGTGTAATGCCCCGTAAGCCCTTCAGAAATAAAAACATCAAAAAAAAGAAATGGTTGCGGGAACCGACGGTGACGAAGGTAACCGGGCCGGACTGGTTGTAGCATTAGCACTTTTATTTGCGAATCCTTTTGTTTAATCCTAAAAAAATTACGTATTTTTTTTCGTATTTTATTTACTTGGACTTGTTGCTCTTGCTTTTTCGAATTATATGAAGCTCATGTATTGGATCTCATCAAAGGAAAATAATGCATTTAAGAAATTATTGTTTTTACCAAAAATTCTTATAGCTTTTTGAAATGTAATCACTATAAGAGCTACTGAAAATAATGATCCACATAAAAGAGCTGCATAACCGTTGAAAATAGGGGGCCAACCAAGACCCCCTAATAAAGCTTTGTTCGATAAAGCAAACGATTCGTTCCGACAACTTCGGACCAGATTAACCCCTTTGAATTAGCCGATCTTACAAAATCGATCGGGCGGGCTGGTTGGGAAGGGGTTATTAGTGGAGAAAAGAATCAATCGAGTGAGAAGAAAAAGGAGGGCCTTTACCAATCCTTTCGTGAAGAGATCGGCAATTGATCTTGCCTCTTATTTCCATATAAAGGACACGACGTGCATAAATACCCTCTTTAACTTCTATTCTGATGGACTAAATGTCTTTCATAAGGAATCGAAGGAAGATTCGACGATTTTTTCCAGGAAAACCCCAACGAAAAATAGACACTATTTCTTCTTTTCTATCGAATCGATCATAACCGCTACCTACATTCCACAAAATTGTGCACCACAAATAGGAGCTAATAAAGAGACCGGCAATCCCATAGAAAGACATTACGATCCCCTGTGGAAAAAAAATTATTTGCTGAGACGATAATTAGTCAAGTTCCCTTTCATTCTGATTTTTTTTAGCGAGTGCCAAGCTAATCTCGTGAGAGTTGCCCCACCACATTGACAACATTTGAAACACAGAGAAAAAAGGCACCCTCGGGAAGAGATCTCCAACTGTCAAAAGTCTGGGCGCTTCTTTGAGAACGCTTTTTCAGAGGGGAGGTCGAAGACAAGGAATCCTTTTAGAAGTGATAAGAATAGCATCTCTTACTCACTTTAGCTTCCTTGCTAAAGTCCGAGGCCTATAACTCGTTCTGGTGAGCGAGTTTAGGAGATTTTTGAGTTGAGCAGACCTCTTCGAGTAACTTACCATGAATCTTCGGTAATAGTTCACGCAATTCGGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATTGATTCTGTATCTTCTGTATATAGTAAGTGGGTCTTGCTGTATATAGAACTTACCCTTTTTTTTATGCTTTTTTACATGCAGTGAAATACATAGATTTTCACCCAAATCAAAAAAGAAAAAAAGGAAGGAGACGGAATATGAATGAACTCAAACTACACGAAAAGGAAATAAGATCTTTATTTGAATACCGTCCGTTAACCAATTTTTTGGAAATTCTTTTTCTGATAATTGAACACCATTATAGGTGCACTTTACATGCATTTCTTTATTCCAATTTTTAAAATCCTCGAACCATTCAGGAAATTGAAATAATAGCATACGATTATTTCATTTCAGATTCATTGGAATCAACATGAATTATGAAGCAAAGAAATAGAATTGGGCCACTATGTATATTAGATTAATATTCCATATATGTAATTGATATGATATCTATATATAAATAGAAAGATATATATTGTAGATTCATCTATATTCAAATTGATCGATATTCCACCTCTATTTTTATACAGTACAATTTTATACACTTCAATAACAATAATAGATAGTATGGTAGAAGGATTCATATATTTCTTTCTACCATACTATCGGATCTCATAGAATACTTCTCTCGTAGAATACTGATAATTCAAGTCCGGGTCATTGCGATTACGGGTTGGGTATCTTGTACTTGAACCGGTGGCTCACTTTTTCTAAGTAATGGGGAAGAGGACCGAAACATGCCACTGAAAGACTCTACTGAGACAAAGATGGGCTGAAATTCCTCCATTTAAAATTTGATTTGAACTTGGGGATACTATAATGGATTTATTGGGTTCTCAAATGATACATAGTGCGATACAGTCAAAACAAGGTATTACAGTAAAAAAAAGAATAATAATAGATACCTCGAAAATAGGTGTAAGATTTTGAACCTGTTCTGTTCATGACTCCTTTTAACTGAGACAGGCGATCTAATGCTTGAAGTAAAAATCAATTTGATTCCACCATACATATCAGGTTGGACGGATCGGGTTATATTTTAAAAGTCTTCCTTTTTCCTTTCTTCATTTCTATCTAATCTTTTTTCTGTTTTGGCTCGGCTATCACACCTAGCCGAGCCATTCCCTTTTATGATACTGAGCCGGGTAAAACCAATAAAATAAAGAAACAAATCTATTCGACGAGCAAAAGGAGAGAGGGATTCGAACCCTCGATAGTTCTTTGTTTCGAACTATACCGATTTTCAAGACCGGAGCTATCAACCACTCGGCCATCTCTCCGAAAGATAATTTCTATTTGATTTATATTCCATCCCATCGAATAGAACATTGACATATAAGTTGCTACCATTACTGTCTATACTATAGACAAATATCTGGCGTGAATCTATAAGTCTATCTATCTGTATATAGATATATATGATCCACCCAACCCAAAGAAATTTTTAGGCATCTACCCTGTCCCTTTGAGTAGTGCTTGACAAATACTTGTTGAGCGGAAACGTGAATTCTGTTGGTAGATGCTCGCCTTTAATTTGAAAGATAATTATTCTTTGTTTTGTAGTACAATACTTTACTGGATTTCGCTTCATTTATCATATTTATCATTTATTTTCGTTTTCATTTAGGTTTATGAAATTTCAATAAAATAAGGAGTCTTTATGTCGCGTTACAGAGGGCCTCGTTTCAAAAAAATACGCCGTCTGGGGGCTTTACCGGGACTAACTAGTAAAAGGCCCAAAACCGGAAACGATCTTAAAAACCAATCGTGTTCCGGTAAAAAATCTCAATATCGTATTCGTTTAGAAGAAAAACAAAAATTGCGTTTTCATTATGGTCTTACAGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCAATTGGGTATGGCTAGGAATGTATTCTATCATAAAAGCTATTTAAGCTTAGCCCGTGGGTATCTCGGGGACTTGCGGATCGAAATGAACTTTACATACATGTTCAGGAAATCCTGTCATTTCTTCTTAGTAGGTAAACTTGAAGGGGAAAGAGAAATCACTTTAGGCTTTGTTGATTTACTACGTGATGATTTTATTGAAAAAGACCGAAGCCGCGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGCCCGACTATGGCGGGGCGGTACGCTCTGCTCTCTCGGGACCCCTACTCTAATCAAAAGACTAAAGGCCCCTACTAAAAGGCGAGCACTGGAATGAGAAAGGCTTGTAGACTCGTGAGGCTGAACGACACATTCGAAAACGAAAGCGCACACTCGAAAGTGCTTCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGCATCTCTCTTTCTCATTCCCCGCTTGACATCTTTTTCTCTCAATGGTGCTCTGCTCATTCAGGATAATTTGAAAAACGGAGATCCCGATCGCCCTTTGCTACGGCTTTTTCAGGGCAAATAA

mRNA sequence

ATGGATTCCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACTGTTACTCGGGCATCTTTACCCTTGGTCAGCATTTGGTACTCTCTCGATAGCTTCTCTCGTTCACTTCAAGCCTTTGGTGTAATGCCCCCCGATCTTACAAAATCGATCGGGCGGGCTGGTTGGGAAGGGGTTATTAGTGGAGAAAAGAATCAATCGACGAGTGCCAAGCTAATCTCTCCGAGGCCTATAACTCGTTCTGGTGAGCGATTCACGCAATTCGGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATTGATTCTGTATCTTCTGTATATAGTAAGTGGAATACTGATAATTCAAGTCCGGGTCATTGCGATTACGGGTTGGGCGATCTAATGCTTGAAGTAAAAATCAATTTGATTCCACCATACATATCAGCCGAGCCATTCCCTTTTATGATACTGAGCCGGACAAATATCTGGCGTGAATCTATAAGTCTATCTATCTTGCTTGACAAATACTTGTTGAGCGGAAACGTGAATTCTGTTGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCAATTGGGTATGGCTAGGAATGTATTCTATCATAAAAGCTATTTAAGCTTAGCCCGTGGGTATCTCGGGGACTTGCGGATCGAAATGAACTTTACATACATGTTCAGGAAATCCTGTCATTTCTTCTTAGTAGGTAAACTTGAAGGGGAAAGAGAAATCACTTTAGGCTTTGTTGATTTACTACGTGATGATTTTATTGAAAAAGACCGAAGCCGCGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGCCCGACTATGGCGGGGCGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGCATCTCTCTTTCTCATTCCCCGCTTGACATCTTTTTCTCTCAATGGTGCTCTGCTCATTCAGGATAATTTGAAAAACGGAGATCCCGATCGCCCTTTGCTACGGCTTTTTCAGGGCAAATAA

Coding sequence (CDS)

ATGGATTCCTTATTAACACCGTTTCGAACACAACGAGTACATTCCAAAATAACTGTTACTCGGGCATCTTTACCCTTGGTCAGCATTTGGTACTCTCTCGATAGCTTCTCTCGTTCACTTCAAGCCTTTGGTGTAATGCCCCCCGATCTTACAAAATCGATCGGGCGGGCTGGTTGGGAAGGGGTTATTAGTGGAGAAAAGAATCAATCGACGAGTGCCAAGCTAATCTCTCCGAGGCCTATAACTCGTTCTGGTGAGCGATTCACGCAATTCGGAAGAAATGGTAAAATATGGGTAAGAGTTCTCGCAGATCTCCCTATTACCGGGAAACCTACAGAAGTCAGAATGGGAAGAGGAAAAGGAAATCCTACGGGTTGGATTGCTCGTGTGTCCACGGGACAAATTGATTCTGTATCTTCTGTATATAGTAAGTGGAATACTGATAATTCAAGTCCGGGTCATTGCGATTACGGGTTGGGCGATCTAATGCTTGAAGTAAAAATCAATTTGATTCCACCATACATATCAGCCGAGCCATTCCCTTTTATGATACTGAGCCGGACAAATATCTGGCGTGAATCTATAAGTCTATCTATCTTGCTTGACAAATACTTGTTGAGCGGAAACGTGAATTCTGTTGAACGACAATTACTTAAATACGTTCGTATCGCCGGAAAAGCCAAAGGATCAACGGGTCAAGTTTTACTACAATTACTTGAAATGCGTTTGGATAACATCCTTTTTCAATTGGGTATGGCTAGGAATGTATTCTATCATAAAAGCTATTTAAGCTTAGCCCGTGGGTATCTCGGGGACTTGCGGATCGAAATGAACTTTACATACATGTTCAGGAAATCCTGTCATTTCTTCTTAGTAGGTAAACTTGAAGGGGAAAGAGAAATCACTTTAGGCTTTGTTGATTTACTACGTGATGATTTTATTGAAAAAGACCGAAGCCGCGGTATTTATTTCACTCAAGATTGGGTCTCTTTACCAGGTGTTCTGCCCGACTATGGCGGGGCGGGTGGCCCCATTTCGCCTTACCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGCATCTCTCTTTCTCATTCCCCGCTTGACATCTTTTTCTCTCAATGGTGCTCTGCTCATTCAGGATAATTTGAAAAACGGAGATCCCGATCGCCCTTTGCTACGGCTTTTTCAGGGCAAATAA

Protein sequence

MDSLLTPFRTQRVHSKITVTRASLPLVSIWYSLDSFSRSLQAFGVMPPDLTKSIGRAGWEGVISGEKNQSTSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQIDSVSSVYSKWNTDNSSPGHCDYGLGDLMLEVKINLIPPYISAEPFPFMILSRTNIWRESISLSILLDKYLLSGNVNSVERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFQLGMARNVFYHKSYLSLARGYLGDLRIEMNFTYMFRKSCHFFLVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQPQGNSEYRPRSFVQTDFWGAKIQSREASLFLIPRLTSFSLNGALLIQDNLKNGDPDRPLLRLFQGK
Homology
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BLAST of CmUC11G211100 vs. NCBI nr
Match: OTF84304.1 (putative ribulose bisphosphate carboxylase, large subunit [Helianthus annuus])

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-17
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQP 350
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P
Sbjct: 338 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGFGGGTLGH-P 397

Query: 351 QGNS 355
            GN+
Sbjct: 398 WGNA 400

[Close]
BLAST of CmUC11G211100 vs. NCBI nr
Match: KAD3640515.1 (hypothetical protein E3N88_29738 [Mikania micrantha])

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-17
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQP 350
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P
Sbjct: 165 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGFGGGTLGH-P 224

Query: 351 QGNS 355
            GN+
Sbjct: 225 WGNA 227

[Close]
BLAST of CmUC11G211100 vs. NCBI nr
Match: PLY71284.1 (hypothetical protein LSAT_0X38040 [Lactuca sativa])

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-17
Identity = 61/125 (48.80%), Postives = 74/125 (59.20%), Query Frame = 0 

Query: 20  TRASLPLVSIW--YSLDSFSRSLQ---AFGVMPPDLTKSIGRAGWEGVISGEKN----QS 79
           TR  +  V +W  YS     R++    + G  P       GR G + + +G  +    ++
Sbjct: 549 TRYGISGVKVWISYSQKERGRAISETCSRGCKPDGTRLGFGRYGTKSLRAGRLSYRAIEA 608

Query: 80  TSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARV 136
               +I     T SG    QF RNGKIWVRVLADLPITG+PTEVRMGRGKGNPTGWIARV
Sbjct: 609 ARRAIIGQFHRTMSG----QFRRNGKIWVRVLADLPITGEPTEVRMGRGKGNPTGWIARV 668

[Close]
BLAST of CmUC11G211100 vs. NCBI nr
Match: AHA37505.1 (ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Anemone narcissiflora])

HSP 1 Score: 101.7 bits (252), Expect = 1.6e-17
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP Y G
Sbjct: 327 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVYSG 376

[Close]
BLAST of CmUC11G211100 vs. NCBI nr
Match: QHI41693.1 (ribosomal protein L16 [Paraprenanthes diversifolia])

HSP 1 Score: 100.5 bits (249), Expect = 3.5e-17
Identity = 55/96 (57.29%), Postives = 62/96 (64.58%), Query Frame = 0 

Query: 44  GVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWV 103
           G  P       GR G + + +G  +    ++    +I     T SG    QF RNGKIWV
Sbjct: 47  GCKPDGTRLGFGRYGTKSLRAGRLSYRAIEAARRAIIGQFHRTMSG----QFRRNGKIWV 106

Query: 104 RVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 136
           RVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
Sbjct: 107 RVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 138

[Close]
BLAST of CmUC11G211100 vs. ExPASy Swiss-Prot
Match: P28378 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adoxa moschatellina OX=4208 GN=rbcL PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Sbjct: 322 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASG 371

[Close]
BLAST of CmUC11G211100 vs. ExPASy Swiss-Prot
Match: P36479 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Asarum canadense OX=28498 GN=rbcL PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Sbjct: 322 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASG 371

[Close]
BLAST of CmUC11G211100 vs. ExPASy Swiss-Prot
Match: Q9MTE7 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Averrhoa carambola OX=28974 GN=rbcL PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Sbjct: 322 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASG 371

[Close]
BLAST of CmUC11G211100 vs. ExPASy Swiss-Prot
Match: Q37192 (Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida OX=13517 GN=rbcL PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Sbjct: 331 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASG 380

[Close]
BLAST of CmUC11G211100 vs. ExPASy Swiss-Prot
Match: P93988 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Brownea coccinea OX=72381 GN=rbcL PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.3e-19
Identity = 46/50 (92.00%), Postives = 47/50 (94.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G
Sbjct: 322 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASG 371

[Close]
BLAST of CmUC11G211100 vs. ExPASy TrEMBL
Match: A0A1Y3BWP5 (Ribulose bisphosphate carboxylase large chain OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr00c0702g0576841 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.7e-18
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQP 350
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P
Sbjct: 338 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGFGGGTLGH-P 397

Query: 351 QGNS 355
            GN+
Sbjct: 398 WGNA 400

[Close]
BLAST of CmUC11G211100 vs. ExPASy TrEMBL
Match: U6BRN5 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anemone narcissiflora OX=168002 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.7e-18
Identity = 47/50 (94.00%), Postives = 48/50 (96.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP Y G
Sbjct: 327 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVYSG 376

[Close]
BLAST of CmUC11G211100 vs. ExPASy TrEMBL
Match: A0A5N6MJP1 (Ribulose bisphosphate carboxylase large chain OS=Mikania micrantha OX=192012 GN=E3N88_29738 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.7e-18
Identity = 51/64 (79.69%), Postives = 54/64 (84.38%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGGAGGPISPYQP 350
           +VGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLP   G GG    + P
Sbjct: 165 VVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPVASGFGGGTLGH-P 224

Query: 351 QGNS 355
            GN+
Sbjct: 225 WGNA 227

[Close]
BLAST of CmUC11G211100 vs. ExPASy TrEMBL
Match: A0A2J6K897 (Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38040 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.7e-18
Identity = 61/125 (48.80%), Postives = 74/125 (59.20%), Query Frame = 0 

Query: 20  TRASLPLVSIW--YSLDSFSRSLQ---AFGVMPPDLTKSIGRAGWEGVISGEKN----QS 79
           TR  +  V +W  YS     R++    + G  P       GR G + + +G  +    ++
Sbjct: 549 TRYGISGVKVWISYSQKERGRAISETCSRGCKPDGTRLGFGRYGTKSLRAGRLSYRAIEA 608

Query: 80  TSAKLISPRPITRSGERFTQFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARV 136
               +I     T SG    QF RNGKIWVRVLADLPITG+PTEVRMGRGKGNPTGWIARV
Sbjct: 609 ARRAIIGQFHRTMSG----QFRRNGKIWVRVLADLPITGEPTEVRMGRGKGNPTGWIARV 668

[Close]
BLAST of CmUC11G211100 vs. ExPASy TrEMBL
Match: A0A6B9S879 (Ribosomal protein L16 OS=Paraprenanthes diversifolia OX=1400673 GN=rpl16 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-17
Identity = 55/96 (57.29%), Postives = 62/96 (64.58%), Query Frame = 0 

Query: 44  GVMPPDLTKSIGRAGWEGVISGEKN----QSTSAKLISPRPITRSGERFTQFGRNGKIWV 103
           G  P       GR G + + +G  +    ++    +I     T SG    QF RNGKIWV
Sbjct: 47  GCKPDGTRLGFGRYGTKSLRAGRLSYRAIEAARRAIIGQFHRTMSG----QFRRNGKIWV 106

Query: 104 RVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 136
           RVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
Sbjct: 107 RVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 138

[Close]
BLAST of CmUC11G211100 vs. TAIR 10
Match: ATMG00080.1 (ribosomal protein L16 )

HSP 1 Score: 96.7 bits (239), Expect = 4.8e-20
Identity = 44/46 (95.65%), Postives = 44/46 (95.65%), Query Frame = 0 

Query: 90  QFGRNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 136
           QF RNGKIWVRV ADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI
Sbjct: 101 QFRRNGKIWVRVFADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 146

[Close]
BLAST of CmUC11G211100 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 91.7 bits (226), Expect = 1.5e-18
Identity = 41/50 (82.00%), Postives = 46/50 (92.00%), Query Frame = 0 

Query: 291 LVGKLEGEREITLGFVDLLRDDFIEKDRSRGIYFTQDWVSLPGVLPDYGG 341
           +VGKLEG+RE TLGFVDLLRDD++EKDRSRGI+FTQDWVSLPGVLP   G
Sbjct: 331 VVGKLEGDRESTLGFVDLLRDDYVEKDRSRGIFFTQDWVSLPGVLPVASG 380

[Close]
BLAST of CmUC11G211100 vs. TAIR 10
Match: ATCG00380.1 (chloroplast ribosomal protein S4 )

HSP 1 Score: 75.9 bits (185), Expect = 8.7e-14
Identity = 41/57 (71.93%), Postives = 45/57 (78.95%), Query Frame = 0 

Query: 200 LLDKYLLSGNVNSVERQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFQLGMARNV 257
           L +K  L  +    E QLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILF+LGMA  +
Sbjct: 48  LEEKQKLRFHYGLTEHQLLKYVRIAGKAKGSTGQVLLQLLEMRLDNILFRLGMALTI 104

[Close]
BLAST of CmUC11G211100 vs. TAIR 10
Match: ATCG00790.1 (ribosomal protein L16 )

HSP 1 Score: 58.5 bits (140), Expect = 1.4e-08
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 0 

Query: 93  RNGKIWVRVLADLPITGKPTEVRMGRGKGNPTGWIARVSTGQI 136
           R GKIWVR+  D P+T +P E RMG GKG+P  W+A V  G+I
Sbjct: 60  RGGKIWVRIFPDKPVTVRPAETRMGSGKGSPEYWVAVVKPGKI 102

[Close]
BLAST of CmUC11G211100 vs. TAIR 10
Match: AT2G28830.1 (PLANT U-BOX 12 )

HSP 1 Score: 52.0 bits (123), Expect = 1.3e-06
Identity = 30/87 (34.48%), Postives = 43/87 (49.43%), Query Frame = 0 

Query: 50  LTKSIGRAGWEGVISGEKNQSTSAKLISPRPITRSGERFTQ-FGRNGKIWVRVLADLPIT 109
           + K +   G+  + S    Q+     I+ R I       T+  GR   + V + AD P+T
Sbjct: 845 INKGVSSQGY--ICSRYALQTLEPAWITSRQIEAGRRAMTRNIGRGLTVRVHIFADKPVT 904

Query: 110 GKPTEVRMGRGKGNPTGWIARVSTGQI 136
            +P E RMGRGKG P  W+A V  G+I
Sbjct: 905 VRPPETRMGRGKGAPAFWVAVVKPGKI 929

The following BLAST results are available for this feature:
BLAST of CmUC11G211100 vs. NCBI nr
Match NameE-valueIdentityDescription
OTF84304.11.6e-1779.69putative ribulose bisphosphate carboxylase, large subunit [Helianthus annuus][more]
KAD3640515.11.6e-1779.69hypothetical protein E3N88_29738 [Mikania micrantha][more]
PLY71284.11.6e-1748.80hypothetical protein LSAT_0X38040 [Lactuca sativa][more]
AHA37505.11.6e-1794.00ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit, partial [Anemone ... [more]
QHI41693.13.5e-1757.29ribosomal protein L16 [Paraprenanthes diversifolia][more]
BLAST of CmUC11G211100 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P283782.3e-1992.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Adoxa moschatellina ... [more]
P364792.3e-1992.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Asarum canadense OX=... [more]
Q9MTE72.3e-1992.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Averrhoa carambola O... [more]
Q371922.3e-1992.00Ribulose bisphosphate carboxylase large chain OS=Bartlettina sordida OX=13517 GN... [more]
P939882.3e-1992.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Brownea coccinea OX=... [more]
BLAST of CmUC11G211100 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1Y3BWP57.7e-1879.69Ribulose bisphosphate carboxylase large chain OS=Helianthus annuus OX=4232 GN=Ha... [more]
U6BRN57.7e-1894.00Ribulose bisphosphate carboxylase large chain (Fragment) OS=Anemone narcissiflor... [more]
A0A5N6MJP17.7e-1879.69Ribulose bisphosphate carboxylase large chain OS=Mikania micrantha OX=192012 GN=... [more]
A0A2J6K8977.7e-1848.80Uncharacterized protein OS=Lactuca sativa OX=4236 GN=LSAT_0X38040 PE=3 SV=1[more]
A0A6B9S8791.7e-1757.29Ribosomal protein L16 OS=Paraprenanthes diversifolia OX=1400673 GN=rpl16 PE=3 SV... [more]
BLAST of CmUC11G211100 vs. TAIR 10
Match NameE-valueIdentityDescription
ATMG00080.14.8e-2095.65ribosomal protein L16 [more]
ATCG00490.11.5e-1882.00ribulose-bisphosphate carboxylases [more]
ATCG00380.18.7e-1471.93chloroplast ribosomal protein S4 [more]
ATCG00790.11.4e-0855.81ribosomal protein L16 [more]
AT2G28830.11.3e-0634.48PLANT U-BOX 12 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 409..415
NoneNo IPR availableGENE3D1.10.1050.10Ribosomal Protein S4 Delta 41; Chain A, domain 1coord: 211..239
e-value: 2.1E-15
score: 58.9
NoneNo IPR availablePANTHERPTHR42704:SF8RIBULOSE BISPHOSPHATE CARBOXYLASE, LARGE SUBUNIT-RELATEDcoord: 291..337
NoneNo IPR availableSUPERFAMILY55174Alpha-L RNA-binding motifcoord: 189..254
IPR000114Ribosomal protein L16PRINTSPR00060RIBOSOMALL16coord: 121..150
score: 28.27
coord: 91..120
score: 58.67
IPR001912Ribosomal protein S4/S9, N-terminalPFAMPF00163Ribosomal_S4coord: 214..240
e-value: 1.9E-4
score: 22.2
IPR000685Ribulose bisphosphate carboxylase, large subunit, C-terminalPFAMPF00016RuBisCO_largecoord: 292..336
e-value: 6.3E-8
score: 32.2
IPR036986RNA-binding S4 domain superfamilyGENE3D3.10.290.10coord: 240..254
e-value: 2.1E-15
score: 58.9
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilyGENE3D3.20.20.110coord: 287..344
e-value: 1.4E-8
score: 36.0
IPR036376Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamilySUPERFAMILY51649RuBisCo, C-terminal domaincoord: 291..341
IPR016180Ribosomal protein L10e/L16PFAMPF00252Ribosomal_L16coord: 93..135
e-value: 5.5E-14
score: 52.3
IPR016180Ribosomal protein L10e/L16CDDcd01433Ribosomal_L16_L10ecoord: 93..135
e-value: 3.15717E-17
score: 75.2207
IPR036920Ribosomal protein L10e/L16 superfamilyGENE3D3.90.1170.10Ribosomal protein L10e/L16coord: 66..136
e-value: 2.3E-16
score: 62.0
IPR036920Ribosomal protein L10e/L16 superfamilySUPERFAMILY54686Ribosomal protein L16p/L10ecoord: 92..135
IPR033966RuBisCOPANTHERPTHR42704RIBULOSE BISPHOSPHATE CARBOXYLASEcoord: 291..337
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00586RIBOSOMAL_L16_1coord: 92..103
IPR020798Ribosomal protein L16, conserved sitePROSITEPS00701RIBOSOMAL_L16_2coord: 115..126

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC11G211100.1CmUC11G211100.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009853 photorespiration
biological_process GO:0019253 reductive pentose-phosphate cycle
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0000287 magnesium ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding