CmUC10G197870 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC10G197870
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	50S ribosomal protein L2, chloroplastic
Location	CmU531Chr10: 29692661 .. 29693089 (+)
RNA-Seq Expression	CmUC10G197870
Synteny	CmUC10G197870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCCTTAGGCACGGTCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGTAGCAGGTGCTATAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTATGGGGAGGTCCGTTTGATATCCAAAAATTGCCCAGCAACAGTTGGACAAGTGGGGAATGTTGGAGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCTTGTAGAACATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCTTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGAAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

mRNA sequence

ATGCCCTTAGGCACGGTCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGTAGCAGGTGCTATAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTATGGGGAGGTCCGTTTGATATCCAAAAATTGCCCAGCAACAGTTGGACAAGTGGGGAATGTTGGAGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCTTGTAGAACATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCTTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGAAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Coding sequence (CDS)

ATGCCCTTAGGCACGGTCATACATAACATAGAAATCACACTTGGGAAGGGGGGACAATTAGCTAGAGTAGCAGGTGCTATAGCGAAACTGATTGCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTATGGGGAGGTCCGTTTGATATCCAAAAATTGCCCAGCAACAGTTGGACAAGTGGGGAATGTTGGAGTAAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAATGTTGGCTAGGTAAGCGTCCTGTAGTAAGAGGAGTAGTTATGAACCTTGTAGAACATCCACATGGGGGTGGTGAAGGGAGGGCCCCAATTGGTAGAAAAAAACCCGCAACCCTTTGGGGTTATCCTGCACTTGGAAGAAGAAGTAGAAAAAGAAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAGTAAATAA

Protein sequence

MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPALGRRSRKRNKYSDNLILRRRSK

Homology

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BLAST of CmUC10G197870 vs. NCBI nr
Match: TYI93527.1 (hypothetical protein E1A91_D02G141400v1 [Gossypium mustelinum])

HSP 1 Score: 269.2 bits (687), Expect = 2.0e-68
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLG+GGQLAR AGA+AKLIAKEGKSATLKLPYGEVRLISKNC ATVGQ
Sbjct: 1   MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRR+SK
Sbjct: 121 LGRRSRKRNKYSDNLILRRQSK 142

[Close]

BLAST of CmUC10G197870 vs. NCBI nr
Match: QCW93768.1 (ribosomal protein L2 [Erismadelphus exsul])

HSP 1 Score: 268.9 bits (686), Expect = 2.6e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNSVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. NCBI nr
Match: YP_009659789.1 (ribosomal protein L2 [Lythrum salicaria] >YP_009659811.1 ribosomal protein L2 [Lythrum salicaria] >QCR99597.1 ribosomal protein L2 [Lythrum salicaria] >QCR99619.1 ribosomal protein L2 [Lythrum salicaria])

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. NCBI nr
Match: YP_009669693.1 (ribosomal protein L2 [Qualea grandiflora] >YP_009669714.1 ribosomal protein L2 [Qualea grandiflora] >YP_009669777.1 ribosomal protein L2 [Ruizterania albiflora] >YP_009669798.1 ribosomal protein L2 [Ruizterania albiflora] >QCW94978.1 ribosomal protein L2 [Qualea grandiflora] >QCW94999.1 ribosomal protein L2 [Qualea grandiflora] >QCW95062.1 ribosomal protein L2 [Ruizterania albiflora] >QCW95083.1 ribosomal protein L2 [Ruizterania albiflora])

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. NCBI nr
Match: YP_009130362.1 (ribosomal protein L2 [Quercus aliena] >YP_009132878.1 ribosomal protein L2 [Quercus spinosa] >YP_009133093.1 ribosomal protein L2 [Quercus aquifolioides] >QSJ48282.1 ribosomal protein L2 [Castanopsis sclerophylla] >AJW60188.1 ribosomal protein L2 [Quercus aliena] >AKA67005.1 ribosomal protein L2 [Quercus spinosa] >AKC05507.1 ribosomal protein L2 [Quercus aquifolioides] >QSJ48304.1 ribosomal protein L2 [Castanopsis sclerophylla])

HSP 1 Score: 268.5 bits (685), Expect = 3.4e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 134 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 193

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 194 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 253

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 254 LGRRSRKRNKYSDNLILRRRSK 275

[Close]

BLAST of CmUC10G197870 vs. ExPASy Swiss-Prot
Match: B1A976 (50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 4.4e-71
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. ExPASy Swiss-Prot
Match: Q2L944 (50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 9.8e-71
Identity = 133/142 (93.66%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLG+GGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. ExPASy Swiss-Prot
Match: Q4VZK5 (50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-70
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 193 VGNAGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. ExPASy Swiss-Prot
Match: B1NWJ1 (50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-70
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 136 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 195

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGN GVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 196 VGNTGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 255

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 256 LGRRSRKRNKYSDNLILRRRSK 277

[Close]

BLAST of CmUC10G197870 vs. ExPASy Swiss-Prot
Match: Q0ZIX7 (50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=3 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.3e-70
Identity = 133/142 (93.66%), Postives = 135/142 (95.07%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKP T WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPTTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. ExPASy TrEMBL
Match: A0A5D2VVV2 (50S ribosomal protein L2, chloroplastic OS=Gossypium mustelinum OX=34275 GN=E1A91_D02G141400v1 PE=3 SV=1)

HSP 1 Score: 269.2 bits (687), Expect = 9.5e-69
Identity = 133/142 (93.66%), Postives = 137/142 (96.48%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLG+GGQLAR AGA+AKLIAKEGKSATLKLPYGEVRLISKNC ATVGQ
Sbjct: 1   MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPYGEVRLISKNCSATVGQ 60

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 120

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRR+SK
Sbjct: 121 LGRRSRKRNKYSDNLILRRQSK 142

[Close]

BLAST of CmUC10G197870 vs. ExPASy TrEMBL
Match: A0A4Y5PNW7 (50S ribosomal protein L2, chloroplastic OS=Erismadelphus exsul OX=1317841 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 268.9 bits (686), Expect = 1.2e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNSVDHPHGGGEGRAPIGRKKPATPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 253 LGRRSRKRNKYSDNLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. ExPASy TrEMBL
Match: A0A6G9INX3 (50S ribosomal protein L2, chloroplastic OS=Castanopsis fargesii OX=167386 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 145 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 204

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 205 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 264

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 265 LGRRSRKRNKYSDNLILRRRSK 286

[Close]

BLAST of CmUC10G197870 vs. ExPASy TrEMBL
Match: A0A5P8HA57 (50S ribosomal protein L2, chloroplastic OS=Quercus stewardiana OX=1497783 GN=rpl2 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 168 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 227

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 228 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 287

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 288 LGRRSRKRNKYSDNLILRRRSK 309

[Close]

BLAST of CmUC10G197870 vs. ExPASy TrEMBL
Match: A0A7S6ZNY8 (Ribosomal protein L2 OS=Castanopsis mekongensis OX=1679275 GN=rpl2 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 1.6e-68
Identity = 134/142 (94.37%), Postives = 136/142 (95.77%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLGKGGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 145 MPLGTAIHNIEITLGKGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 204

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKPAT WGYPA
Sbjct: 205 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPATPWGYPA 264

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRRSRKRNKYSDNLILRRRSK
Sbjct: 265 LGRRSRKRNKYSDNLILRRRSK 286

[Close]

BLAST of CmUC10G197870 vs. TAIR 10
Match: ATCG00830.1 (ribosomal protein L2 )

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-69
Identity = 128/142 (90.14%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLG+GGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKP T WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRR+RKR KYS+ LILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. TAIR 10
Match: ATCG01310.1 (ribosomal protein L2 )

HSP 1 Score: 258.5 bits (659), Expect = 3.2e-69
Identity = 128/142 (90.14%), Postives = 133/142 (93.66%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATLKLPYGEVRLISKNCPATVGQ 60
           MPLGT IHNIEITLG+GGQLAR AGA+AKLIAKEGKSATLKLP GEVRLISKNC ATVGQ
Sbjct: 133 MPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 192

Query: 61  VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATLWGYPA 120
           VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMN V+HPHGGGEGRAPIGRKKP T WGYPA
Sbjct: 193 VGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNPVDHPHGGGEGRAPIGRKKPVTPWGYPA 252

Query: 121 LGRRSRKRNKYSDNLILRRRSK 143
           LGRR+RKR KYS+ LILRRRSK
Sbjct: 253 LGRRTRKRKKYSETLILRRRSK 274

[Close]

BLAST of CmUC10G197870 vs. TAIR 10
Match: AT2G44065.1 (Ribosomal protein L2 family )

HSP 1 Score: 107.8 bits (268), Expect = 7.1e-24
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATL-KLPYGEVRLISKNCPATVG 60
           M +GT+IHNIE+  G+G ++ R AG  AK++ +  K   L KLP G+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATL---W 120
            V N     K L +AG   WLG RP VRGV MN  +HPHGGGEG++     +  T    W
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CmUC10G197870 vs. TAIR 10
Match: AT2G44065.2 (Ribosomal protein L2 family )

HSP 1 Score: 107.8 bits (268), Expect = 7.1e-24
Identity = 56/126 (44.44%), Postives = 74/126 (58.73%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSATL-KLPYGEVRLISKNCPATVG 60
           M +GT+IHNIE+  G+G ++ R AG  AK++ +  K   L KLP G+ + I+  C AT+G
Sbjct: 68  MRIGTIIHNIEMNPGQGAKMVRAAGTNAKILKEPAKGKCLIKLPSGDTKWINAKCRATIG 127

Query: 61  QVGNVGVNQKSLGRAGSKCWLGKRPVVRGVVMNLVEHPHGGGEGRAPIGRKKPATL---W 120
            V N     K L +AG   WLG RP VRGV MN  +HPHGGGEG++     +  T    W
Sbjct: 128 TVSNPSHGTKKLYKAGQSRWLGIRPKVRGVAMNPCDHPHGGGEGKSKSSGSRGRTSVSPW 187

Query: 121 GYPALG 123
           G P  G
Sbjct: 188 GKPCKG 193

[Close]

BLAST of CmUC10G197870 vs. TAIR 10
Match: AT3G51190.1 (Ribosomal protein L2 family )

HSP 1 Score: 81.3 bits (199), Expect = 7.1e-16
Identity = 49/112 (43.75%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 1   MPLGTVIHNIEITLGKGGQLARVAGAIAKLIAKEGKSAT--LKLPYGEVRLISKNCPATV 60
           +P G VI N+E+ +G  G LAR +G  A +IA   +S T  +KLP G  +++   C A +
Sbjct: 108 IPEGAVICNVELHVGDRGALARASGDYAIVIAHNPESNTTRVKLPSGSKKILPSACRAMI 167

Query: 61  GQVGNVGVNQKSLGRAGS---------KCWLGKRPVVRGVVMNLVEHPHGGG 102
           GQV   G  +K L +AG+          CW    PVVRGV MN VEHPHGGG
Sbjct: 168 GQVAGGGRTEKPLLKAGNAYHKYKAKRNCW----PVVRGVAMNPVEHPHGGG 215

The following BLAST results are available for this feature:

BLAST of CmUC10G197870 vs. NCBI nr


Match Name	E-value	Identity	Description
TYI93527.1	2.0e-68	93.66	hypothetical protein E1A91_D02G141400v1 [Gossypium mustelinum]	[more]
QCW93768.1	2.6e-68	94.37	ribosomal protein L2 [Erismadelphus exsul]	[more]
YP_009659789.1	3.4e-68	94.37	ribosomal protein L2 [Lythrum salicaria] >YP_009659811.1 ribosomal protein L2 [L...	[more]
YP_009669693.1	3.4e-68	94.37	ribosomal protein L2 [Qualea grandiflora] >YP_009669714.1 ribosomal protein L2 [...	[more]
YP_009130362.1	3.4e-68	94.37	ribosomal protein L2 [Quercus aliena] >YP_009132878.1 ribosomal protein L2 [Quer...	[more]

BLAST of CmUC10G197870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B1A976	4.4e-71	94.37	50S ribosomal protein L2, chloroplastic OS=Carica papaya OX=3649 GN=rpl2-A PE=3 ...	[more]
Q2L944	9.8e-71	93.66	50S ribosomal protein L2, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rpl2-A ...	[more]
Q4VZK5	1.3e-70	93.66	50S ribosomal protein L2, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl2-A PE=...	[more]
B1NWJ1	1.3e-70	93.66	50S ribosomal protein L2, chloroplastic OS=Manihot esculenta OX=3983 GN=rpl2-A P...	[more]
Q0ZIX7	1.3e-70	93.66	50S ribosomal protein L2, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl2-A PE=...	[more]

BLAST of CmUC10G197870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D2VVV2	9.5e-69	93.66	50S ribosomal protein L2, chloroplastic OS=Gossypium mustelinum OX=34275 GN=E1A9...	[more]
A0A4Y5PNW7	1.2e-68	94.37	50S ribosomal protein L2, chloroplastic OS=Erismadelphus exsul OX=1317841 GN=rpl...	[more]
A0A6G9INX3	1.6e-68	94.37	50S ribosomal protein L2, chloroplastic OS=Castanopsis fargesii OX=167386 GN=rpl...	[more]
A0A5P8HA57	1.6e-68	94.37	50S ribosomal protein L2, chloroplastic OS=Quercus stewardiana OX=1497783 GN=rpl...	[more]
A0A7S6ZNY8	1.6e-68	94.37	Ribosomal protein L2 OS=Castanopsis mekongensis OX=1679275 GN=rpl2 PE=4 SV=1	[more]

BLAST of CmUC10G197870 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00830.1	3.2e-69	90.14	ribosomal protein L2	[more]
ATCG01310.1	3.2e-69	90.14	ribosomal protein L2	[more]
AT2G44065.1	7.1e-24	44.44	Ribosomal protein L2 family	[more]
AT2G44065.2	7.1e-24	44.44	Ribosomal protein L2 family	[more]
AT3G51190.1	7.1e-16	43.75	Ribosomal protein L2 family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022669	Ribosomal protein L2, C-terminal	SMART	SM01382	Ribosomal_L2_C_2	coord: 1..119 e-value: 2.0E-56 score: 203.5
IPR022669	Ribosomal protein L2, C-terminal	PFAM	PF03947	Ribosomal_L2_C	coord: 1..117 e-value: 5.8E-45 score: 152.5
IPR014726	Ribosomal protein L2, domain 3	GENE3D	4.10.950.10	Ribosomal protein L2, domain 3	coord: 63..141 e-value: 1.3E-32 score: 113.7
IPR005880	Ribosomal protein L2, bacterial/organellar-type	TIGRFAM	TIGR01171	TIGR01171	coord: 1..141 e-value: 1.2E-57 score: 193.3
IPR014722	Ribosomal protein L2, domain 2	GENE3D	2.30.30.30		coord: 1..62 e-value: 2.2E-27 score: 96.8
None	No IPR available	PANTHER	PTHR13691:SF5	39S RIBOSOMAL PROTEIN L2, MITOCHONDRIAL	coord: 1..139
IPR002171	Ribosomal protein L2	PANTHER	PTHR13691	RIBOSOMAL PROTEIN L2	coord: 1..139
IPR008991	Translation protein SH3-like domain superfamily	SUPERFAMILY	50104	Translation proteins SH3-like domain	coord: 1..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC10G197870.1	CmUC10G197870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0015934	large ribosomal subunit
cellular_component	GO:0005840	ribosome
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003723	RNA binding