CmUC09G173420 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC09G173420
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	cleavage and polyadenylation specificity factor subunit 1
Location	CmU531Chr09: 18628336 .. 18631794 (+)
RNA-Seq Expression	CmUC09G173420
Synteny	CmUC09G173420

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCATCGACCTTGTTTTTTTATCAGGGGAGATCTTGTCTGGAATAACTTCACAATGTCTTTTCCAAATGAATCGAATGTTGTCAATTTTTCTTGGTGCTCCTCAGGGTCACATTGCTCAATTTCATCGCTGCTTGCACTAACTATTGACTCAACTTCCGCATCTGAATGCTCTGGACTTGGTCGAGAATCAGCGCGATTTGATGTGCCTTGCAAGAATGATACGTTTGAGCCATTGATATTGATTAAGGATTGACTGAAGATTTGAGATGAAGGTTGAGGAACCACTGACCTGTAAGGGTAGGTGTCTAGAACAAGAATTTTTGCACAACTTTACTCAAGCAAGTCTGTATTTGCTAATGCCGACCATTAGTGATGTAGGGGATTTCTTCGTCTGACATAAAATTTTGGGAACGGCTTGAAGATGTGGGGTCGCATTTTTAATGATGTCGGCGTGGCTGTTCGAGTAGGAGTGTTGACTGTTTTGTCTGGGGAAAAGAGCGACTATTGATCTTTTGAGAAACCTGAGAGAGAAGGTTTGAAGAATTCAATGATTTTGTCATTGATTGTTTGTTGGAGGAAGCGTCTGCTTCTAAAGGGATATTAGAGGACACCGACACCCTAGAATTAATTAAGGGGGAATTTGGATCGATTTTGCTTTGGCTATTTCGAAGAATGCAGTTTTGGCCGCCGAGAATCTCTCTCCTATTAACTTCCGACTTTTCAACTACCTTTCTTGCATCTAAAAAGGCTTTTTCGACTTTATGGCTGCTGACTTGGATTGGCGCGCTTTTAATTTGAAAATGACCCTCGAGCTTCTTCGTCGAAGGTTCGGCAACTTCATCGATCTCAAGCACGTCCGGTAACTTATCCAACGATAGGACCATATTTCGGCCATTTCTTTTGCAACTTGATAAAATATAGCTGACATCTTCATCCTCTGCTACTTTATTCAAGCGGCATTGATCCATTGGGTTAATAAAATCTTTAAAAAATAATTCTTTGTGCACAAAGGAAGGAACATCCACAGCTTCAACATCTCCAAAGTTTAAAAATATTGATCCTCTCTTTTCGTTTTTTACTTCAATTGATGCAGGCATAAATCCACATAAATTTCTTTCGATTTTGATCTTGGCTTCTGATACATTCAAAAGATTAAGTGTCTTTAATGCTATTTCTTCCAATCCTGCAAAGTGGTAGCCGATGGCTTCAAAGATAGCTCTGTGCCAGTATTCCAACGGTAAATTTTGTATTACCAGCCATCCACCAAAACCTTTGATACAAGTGGGCCTACTATGTTGAATTGAGTTCCATTTTTCAAATAGAAGATGGAATTTACGGCAGTCAAATCATTTTTTGGGTGTTTCGATCATCTCTTCTAAATTTCCTTGTGTTACTTTAATTAGAGCCTTATCAGCGAACAGAGGGTTGATGCTGACTTTGATTTGATATAATTCTTCCAAAAAACTGACAATGTCTTTCCATTCATCGAATGTAGATAGTCTTGATACAACCCATAAGTTGACAAAATCTTCCTTGAACGCCTAATTTTCCTTTCTGATCCAACATTGGAAATTGCTCTATTTATTGGGTGTAAAAATAGAGGATTTTGATTGCTCATGAATGACCTCCATTTTGCTCTGTTTTAGTGGAACCCTACAAAAGATGTATGCTGGCTCATTCCTTTTGATAAAATCTTTGCATAACTCGTCTGAAACAAATTTGGATGAGGGAAATATTTCTGATTCTTGTCAATTTTCTCTATCTTGTCTCTAGAGAGTCCAATTCGATTGATGAAGCTGTTAACCATTTCTAGAAACTCGTTCCATCTTTGTTGCGCTGACCCTTCTGGAACGTGGATGAAAAAGCGACCTTCGACGGCTGGCCAAACGACACATCTTAAATTCCAGCCCGAGTTACATTTGAGTTTTGACAATCTCATAGCTCCTGATTCATCGCGCATTTCTCTTAAGAAAAAACAAACACTTGAACCATTGATGAGATTTGAGAGCTACTTTAACATCCAAAGCATATGCGTTTCCGATAGGTGAATTGTTTTCTGTGCTTCCACATCTTCGACAACAAAATGCCCATCTTCAAACCAAGTGCAGAAGTAGAATCCATTGATCTTGCAGCTAACTATTTCCATGTTCTTAGCTTGAATACTCGACTTTGGGGGAAGTTTTTCCGGTGAGGGTGGGTGAAGTTAGAGAAGAGGAAAAAGTTTGCCGGAGGGGAGAGGAATGGGGGAGGAGGGAGGAGAGAGGAGAGAGGAGAAAGATGAGAGAACTTACCTGCCATGAGTGATATCTTCAAACCAGCTTCACATGTGGATAATTTAATTCTTTGAAATGTTCTTTGAGGAAATGATCAACCAAGAATATGTTTGATTGAGTCATGATGTTGGTTTGAGTGTTTTGATTTGGCTACGACTAAAGCTTTCCAATGGTGTTCTCTCTCTATTTTATTTGTGGACTATTCTTTTGATGATATTTTTATTCATTAGGATTCTTTCGTTTCCCTTAACTAACTTTTATTAAGCTTTTGGTTTCTTTTTCTATATTTTCCACTCTTTTGGAGTTTATCTCCTTTGAACATTTTTTTTCCTTATCATTAATTAGTAGAAAGTTTGTACCTTCTTAAAAAAAATGAAAATGTTTGATTCAAGAGTTCAAAATGAAAGAATTTGATAGTTAAAAATATATTTTAGGAATACAAATACAGGTGGCATATTCTTTATCTCTCAGTCTTTTTATTTTTTCTTCCTTCTCTCTTTTAACCTGGATTTACTTTATGGCAATTGAAAAAGAACGTGTTGTTTCGTTACTGAGAACTGCCTTGTCTTTCCCAGCTATGTGATGGACCCATTGTTGCCTTTACAGTGCTACATAATGTGAACTGTAACCATGGACTTATATATGTCACATCACAGGTTAGATATTCTTATTGTGTCCTGCTGTGATTCATTCACCCTTTCACCCACAATTGTTGTGTATGATTCTTAGCATTTACTAGTATTTGTATATCCTAGGGTGTTCTGAAGATTTGTCAACTTCCATCGACATCAAACTACGATAATTACTGGCCGGTACAGAAAGTATGTTTTGCCCTCCCTTTTCTAATTTTATTTTTATTTTTATTTGAATCTGTTTGTCTTTCATTAACTTTAGCTGGTGCAACGATATTGAACTTCTGGCCAGGTTCCACTGAAAGGAACTCCACACCAGGTCACCTACTTCCATGAAAAGAATCTGTACCCGGTTATAATTTCAGCGCCTGTGAGTACTTCTATATTTTCTTTCTTTTCCTTCCATATGGTCACTTTAGCTGATGACTTGCTGACTGTGGATGAAATCATGTACAGAGTTCGAGGCCTGGAGTTCACAGTAGAATTCTCTTTGATTGTCTTTTTTCTTTTTCGGTTCCATATGAACTAATGACTTATTCTTGTGAATGA

mRNA sequence

ATGAGGCATCGACCTTGTTTTTTTATCAGGGGAGATCTTGTCTGGAATAACTTCACAATGTCTTTTCCAAATGAATCGAATGTTGTCAATTTTTCTTGGTGCTCCTCAGGGTCACATTGCTCAATTTCATCGCTGCTTGCACTAACTATTGACTCAACTTCCGCATCTGAATGCTCTGGACTTGGTCGAGAATCAGCGCGATTTGATCTATGTGATGGACCCATTGTTGCCTTTACAGTGCTACATAATGTGAACTGTAACCATGGACTTATATATGTCACATCACAGGGTGTTCTGAAGATTTGTCAACTTCCATCGACATCAAACTACGATAATTACTGGCCGGTACAGAAAGTTCCACTGAAAGGAACTCCACACCAGGTCACCTACTTCCATGAAAAGAATCTGTACCCGGTTATAATTTCAGCGCCTAGTTCGAGGCCTGGAGTTCACAGTAGAATTCTCTTTGATTGTCTTTTTTCTTTTTCGGTTCCATATGAACTAATGACTTATTCTTGTGAATGA

Coding sequence (CDS)

ATGAGGCATCGACCTTGTTTTTTTATCAGGGGAGATCTTGTCTGGAATAACTTCACAATGTCTTTTCCAAATGAATCGAATGTTGTCAATTTTTCTTGGTGCTCCTCAGGGTCACATTGCTCAATTTCATCGCTGCTTGCACTAACTATTGACTCAACTTCCGCATCTGAATGCTCTGGACTTGGTCGAGAATCAGCGCGATTTGATCTATGTGATGGACCCATTGTTGCCTTTACAGTGCTACATAATGTGAACTGTAACCATGGACTTATATATGTCACATCACAGGGTGTTCTGAAGATTTGTCAACTTCCATCGACATCAAACTACGATAATTACTGGCCGGTACAGAAAGTTCCACTGAAAGGAACTCCACACCAGGTCACCTACTTCCATGAAAAGAATCTGTACCCGGTTATAATTTCAGCGCCTAGTTCGAGGCCTGGAGTTCACAGTAGAATTCTCTTTGATTGTCTTTTTTCTTTTTCGGTTCCATATGAACTAATGACTTATTCTTGTGAATGA

Protein sequence

MRHRPCFFIRGDLVWNNFTMSFPNESNVVNFSWCSSGSHCSISSLLALTIDSTSASECSGLGRESARFDLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYFHEKNLYPVIISAPSSRPGVHSRILFDCLFSFSVPYELMTYSCE

Homology

[Close]

BLAST of CmUC09G173420 vs. NCBI nr
Match: TYK07640.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucumis melo var. makuwa])

HSP 1 Score: 169.9 bits (429), Expect = 2.0e-38
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 264 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 323

Query: 130 YFHEKNLYPVIISAPSS 147
           YFHEKNLYPVIISAPSS
Sbjct: 324 YFHEKNLYPVIISAPSS 340

[Close]

BLAST of CmUC09G173420 vs. NCBI nr
Match: KAA0049898.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X3 [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 421 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 480

Query: 130 YFHEKNLYPVIISAPSSRP 149
           YFHEKNLYPVIISAP  +P
Sbjct: 481 YFHEKNLYPVIISAPVQKP 499

[Close]

BLAST of CmUC09G173420 vs. NCBI nr
Match: XP_038887723.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa hispida])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 716 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 775

Query: 130 YFHEKNLYPVIISAPSSRP 149
           YFHEKNLYPVIISAP  +P
Sbjct: 776 YFHEKNLYPVIISAPVQKP 794

[Close]

BLAST of CmUC09G173420 vs. NCBI nr
Match: XP_038887722.1 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Benincasa hispida])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70   LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
            LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 974  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 1033

Query: 130  YFHEKNLYPVIISAPSSRP 149
            YFHEKNLYPVIISAP  +P
Sbjct: 1034 YFHEKNLYPVIISAPVQKP 1052

[Close]

BLAST of CmUC09G173420 vs. NCBI nr
Match: XP_016899512.1 (PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucumis melo])

HSP 1 Score: 169.5 bits (428), Expect = 2.6e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 815 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 874

Query: 130 YFHEKNLYPVIISAPSSRP 149
           YFHEKNLYPVIISAP  +P
Sbjct: 875 YFHEKNLYPVIISAPVQKP 893

[Close]

BLAST of CmUC09G173420 vs. ExPASy Swiss-Prot
Match: Q9FGR0 (Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thaliana OX=3702 GN=CPSF160 PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.1e-35
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 61   LGRESARF--DLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQK 120
            L RE  RF   LCDG I AFTVLHNVNCNHG IYVT+QGVLKICQLPS S YDNYWPVQK
Sbjct: 958  LFRERLRFHSQLCDGSIAAFTVLHNVNCNHGFIYVTAQGVLKICQLPSASIYDNYWPVQK 1017

Query: 121  VPLKGTPHQVTYFHEKNLYPVIISAPSSRP 149
            +PLK TPHQVTY+ EKNLYP+I+S P S+P
Sbjct: 1018 IPLKATPHQVTYYAEKNLYPLIVSYPVSKP 1047

[Close]

BLAST of CmUC09G173420 vs. ExPASy Swiss-Prot
Match: Q7XWP1 (Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0252200 PE=3 SV=2)

HSP 1 Score: 142.1 bits (357), Expect = 5.8e-33
Identity = 62/79 (78.48%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 70   LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
            LCDGPI AFTVLHNVNC+HG IYVTSQG LKICQLPS  NYD+YWPVQKVPL GTPHQVT
Sbjct: 967  LCDGPIEAFTVLHNVNCSHGFIYVTSQGFLKICQLPSAYNYDSYWPVQKVPLHGTPHQVT 1026

Query: 130  YFHEKNLYPVIISAPSSRP 149
            Y+ E++LYP+I+S P  RP
Sbjct: 1027 YYAEQSLYPLIVSVPVVRP 1045

[Close]

BLAST of CmUC09G173420 vs. ExPASy Swiss-Prot
Match: Q9EPU4 (Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus OX=10090 GN=Cpsf1 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.8e-13
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 72   DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYF 131
            DGPI +F   HNVNC  G +Y   QG L+I  LP+  +YD  WPV+K+PL+ T H V Y 
Sbjct: 967  DGPIDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYH 1026

Query: 132  HEKNLYPVIIS 143
             E  +Y V  S
Sbjct: 1027 VESKVYAVATS 1037

[Close]

BLAST of CmUC09G173420 vs. ExPASy Swiss-Prot
Match: Q10569 (Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 GN=CPSF1 PE=1 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 72   DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYF 131
            DGPI +F   HN+NC  G +Y   QG L+I  LP+  +YD  WPV+K+PL+ T H V Y 
Sbjct: 970  DGPIDSFAPFHNINCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYH 1029

Query: 132  HEKNLYPVIIS 143
             E  +Y V  S
Sbjct: 1030 VESKVYAVATS 1040

[Close]

BLAST of CmUC09G173420 vs. ExPASy Swiss-Prot
Match: Q10570 (Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens OX=9606 GN=CPSF1 PE=1 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 33/71 (46.48%), Postives = 43/71 (60.56%), Query Frame = 0


Query: 72   DGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVTYF 131
            DGP+ +F   HNVNC  G +Y   QG L+I  LP+  +YD  WPV+K+PL+ T H V Y 
Sbjct: 969  DGPVDSFAPFHNVNCPRGFLYFNRQGELRISVLPAYLSYDAPWPVRKIPLRCTAHYVAYH 1028

Query: 132  HEKNLYPVIIS 143
             E  +Y V  S
Sbjct: 1029 VESKVYAVATS 1039

[Close]

BLAST of CmUC09G173420 vs. ExPASy TrEMBL
Match: A0A5D3C8H0 (Cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold105G00420 PE=4 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 9.7e-39
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 264 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 323

Query: 130 YFHEKNLYPVIISAPSS 147
           YFHEKNLYPVIISAPSS
Sbjct: 324 YFHEKNLYPVIISAPSS 340

[Close]

BLAST of CmUC09G173420 vs. ExPASy TrEMBL
Match: A0A5A7U3R4 (Cleavage and polyadenylation specificity factor subunit 1 isoform X3 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13G00500 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 421 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 480

Query: 130 YFHEKNLYPVIISAPSSRP 149
           YFHEKNLYPVIISAP  +P
Sbjct: 481 YFHEKNLYPVIISAPVQKP 499

[Close]

BLAST of CmUC09G173420 vs. ExPASy TrEMBL
Match: A0A1S4DU68 (cleavage and polyadenylation specificity factor subunit 1 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103485885 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 733 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 792

Query: 130 YFHEKNLYPVIISAPSSRP 149
           YFHEKNLYPVIISAP  +P
Sbjct: 793 YFHEKNLYPVIISAPVQKP 811

[Close]

BLAST of CmUC09G173420 vs. ExPASy TrEMBL
Match: A0A1S3B4E8 (cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103485885 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70   LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
            LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 972  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 1031

Query: 130  YFHEKNLYPVIISAPSSRP 149
            YFHEKNLYPVIISAP  +P
Sbjct: 1032 YFHEKNLYPVIISAPVQKP 1050

[Close]

BLAST of CmUC09G173420 vs. ExPASy TrEMBL
Match: A0A1S4DU39 (cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103485885 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 1.3e-38
Identity = 76/79 (96.20%), Postives = 77/79 (97.47%), Query Frame = 0


Query: 70  LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 129
           LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT
Sbjct: 815 LCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQKVPLKGTPHQVT 874

Query: 130 YFHEKNLYPVIISAPSSRP 149
           YFHEKNLYPVIISAP  +P
Sbjct: 875 YFHEKNLYPVIISAPVQKP 893

[Close]

BLAST of CmUC09G173420 vs. TAIR 10
Match: AT5G51660.1 (cleavage and polyadenylation specificity factor 160 )

HSP 1 Score: 150.2 bits (378), Expect = 1.5e-36
Identity = 69/90 (76.67%), Postives = 75/90 (83.33%), Query Frame = 0


Query: 61   LGRESARF--DLCDGPIVAFTVLHNVNCNHGLIYVTSQGVLKICQLPSTSNYDNYWPVQK 120
            L RE  RF   LCDG I AFTVLHNVNCNHG IYVT+QGVLKICQLPS S YDNYWPVQK
Sbjct: 958  LFRERLRFHSQLCDGSIAAFTVLHNVNCNHGFIYVTAQGVLKICQLPSASIYDNYWPVQK 1017

Query: 121  VPLKGTPHQVTYFHEKNLYPVIISAPSSRP 149
            +PLK TPHQVTY+ EKNLYP+I+S P S+P
Sbjct: 1018 IPLKATPHQVTYYAEKNLYPLIVSYPVSKP 1047

The following BLAST results are available for this feature:

BLAST of CmUC09G173420 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK07640.1	2.0e-38	100.00	cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Cucumis me...	[more]
KAA0049898.1	2.6e-38	96.20	cleavage and polyadenylation specificity factor subunit 1 isoform X3 [Cucumis me...	[more]
XP_038887723.1	2.6e-38	96.20	cleavage and polyadenylation specificity factor subunit 1 isoform X2 [Benincasa ...	[more]
XP_038887722.1	2.6e-38	96.20	cleavage and polyadenylation specificity factor subunit 1 isoform X1 [Benincasa ...	[more]
XP_016899512.1	2.6e-38	96.20	PREDICTED: cleavage and polyadenylation specificity factor subunit 1 isoform X2 ...	[more]

BLAST of CmUC09G173420 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FGR0	2.1e-35	76.67	Cleavage and polyadenylation specificity factor subunit 1 OS=Arabidopsis thalian...	[more]
Q7XWP1	5.8e-33	78.48	Probable cleavage and polyadenylation specificity factor subunit 1 OS=Oryza sati...	[more]
Q9EPU4	8.8e-13	47.89	Cleavage and polyadenylation specificity factor subunit 1 OS=Mus musculus OX=100...	[more]
Q10569	1.1e-12	46.48	Cleavage and polyadenylation specificity factor subunit 1 OS=Bos taurus OX=9913 ...	[more]
Q10570	1.1e-12	46.48	Cleavage and polyadenylation specificity factor subunit 1 OS=Homo sapiens OX=960...	[more]

BLAST of CmUC09G173420 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C8H0	9.7e-39	100.00	Cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucumis ...	[more]
A0A5A7U3R4	1.3e-38	96.20	Cleavage and polyadenylation specificity factor subunit 1 isoform X3 OS=Cucumis ...	[more]
A0A1S4DU68	1.3e-38	96.20	cleavage and polyadenylation specificity factor subunit 1 isoform X3 OS=Cucumis ...	[more]
A0A1S3B4E8	1.3e-38	96.20	cleavage and polyadenylation specificity factor subunit 1 isoform X1 OS=Cucumis ...	[more]
A0A1S4DU39	1.3e-38	96.20	cleavage and polyadenylation specificity factor subunit 1 isoform X2 OS=Cucumis ...	[more]

BLAST of CmUC09G173420 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G51660.1	1.5e-36	76.67	cleavage and polyadenylation specificity factor 160	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015943	WD40/YVTN repeat-like-containing domain superfamily	GENE3D	2.130.10.10		coord: 72..153 e-value: 1.2E-5 score: 26.7
None	No IPR available	PANTHER	PTHR10644	DNA REPAIR/RNA PROCESSING CPSF FAMILY	coord: 62..145
None	No IPR available	PANTHER	PTHR10644:SF2	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 1	coord: 62..145

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC09G173420.1	CmUC09G173420.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006378	mRNA polyadenylation
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003684	damaged DNA binding
molecular_function	GO:0005515	protein binding