CmUC09G170900 (gene) Watermelon (USVL531) v1

Overview
NameCmUC09G170900
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionTCP transcription factor
LocationCmU531Chr09: 10635246 .. 10635713 (-)
RNA-Seq ExpressionCmUC09G170900
SyntenyCmUC09G170900
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTTCTGCGACCACGTCCACTAATTTTCAGGGCTATCCGGTGAATTTCATTTTGAGACCCACTGACCCGGCTCGAGATCTCGCCCTCTCTCTCCATAACCTCCATGATTCTCCCCTAATTCCGTCGGAGGAAGATGGAAACCATTCGCCGGCGAATGACCAGCGGCTTATTTCCGATTCGATTCCGGCGGGGTACGAAGGAGACGAGGCTGGGCTGTGGCTGCAGCAGCCATTGTTAGGGCAAAATTCGGCAGCGGCGTTTTCCCAGAGGGTGTCGGTTCAGGCCAGTTTGGGGCATTCGCTGCCGATTCGTGGTTGGAGCAATCAGAATCGACAGTTGTCGGTGCTCGGCGGCCGATTTGATGGGTCATCGGAGTTGCGTACGCCGTCGCGGATTCGAGGTGAAGGTCGGGAAGATGGCGTCGTTTCCGGGACTCATTCGTCGCCGCCGAATTATCGCCGGTAG

mRNA sequence

ATGAGTTCTGCGACCACGTCCACTAATTTTCAGGGCTATCCGGTGAATTTCATTTTGAGACCCACTGACCCGGCTCGAGATCTCGCCCTCTCTCTCCATAACCTCCATGATTCTCCCCTAATTCCGTCGGAGGAAGATGGAAACCATTCGCCGGCGAATGACCAGCGGCTTATTTCCGATTCGATTCCGGCGGGGTACGAAGGAGACGAGGCTGGGCTGTGGCTGCAGCAGCCATTGTTAGGGCAAAATTCGGCAGCGGCGTTTTCCCAGAGGGTGTCGGTTCAGGCCAGTTTGGGGCATTCGCTGCCGATTCGTGGTTGGAGCAATCAGAATCGACAGTTGTCGGTGCTCGGCGGCCGATTTGATGGGTCATCGGAGTTGCGTACGCCGTCGCGGATTCGAGGTGAAGGTCGGGAAGATGGCGTCGTTTCCGGGACTCATTCGTCGCCGCCGAATTATCGCCGGTAG

Coding sequence (CDS)

ATGAGTTCTGCGACCACGTCCACTAATTTTCAGGGCTATCCGGTGAATTTCATTTTGAGACCCACTGACCCGGCTCGAGATCTCGCCCTCTCTCTCCATAACCTCCATGATTCTCCCCTAATTCCGTCGGAGGAAGATGGAAACCATTCGCCGGCGAATGACCAGCGGCTTATTTCCGATTCGATTCCGGCGGGGTACGAAGGAGACGAGGCTGGGCTGTGGCTGCAGCAGCCATTGTTAGGGCAAAATTCGGCAGCGGCGTTTTCCCAGAGGGTGTCGGTTCAGGCCAGTTTGGGGCATTCGCTGCCGATTCGTGGTTGGAGCAATCAGAATCGACAGTTGTCGGTGCTCGGCGGCCGATTTGATGGGTCATCGGAGTTGCGTACGCCGTCGCGGATTCGAGGTGAAGGTCGGGAAGATGGCGTCGTTTCCGGGACTCATTCGTCGCCGCCGAATTATCGCCGGTAG

Protein sequence

MSSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDSIPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRFDGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR
Homology
BLAST of CmUC09G170900 vs. NCBI nr
Match: XP_023529225.1 (transcription factor TCP10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 208.4 bits (529), Expect = 4.5e-50
Identity = 107/154 (69.48%), Postives = 118/154 (76.62%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
           +SATTS NFQGYPV+ IL PT P RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTGPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188

Query: 62  IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
           IPAGYEG +AGLWLQQPL+GQNS AAFSQ           +P+ GWSNQ RQ +  GGRF
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VPMHGWSNQIRQSAGHGGRF 248

Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
           +G SE  TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 EGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271

BLAST of CmUC09G170900 vs. NCBI nr
Match: XP_022989259.1 (transcription factor TCP10-like [Cucurbita maxima])

HSP 1 Score: 208.0 bits (528), Expect = 5.9e-50
Identity = 107/154 (69.48%), Postives = 118/154 (76.62%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
           +SATTS NFQGYPV+ IL PTDP RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188

Query: 62  IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
           IPAGYEG +AGLWLQQPL+ QNS AAFSQ           +P+ GWSNQ RQ +  GGRF
Sbjct: 189 IPAGYEGGDAGLWLQQPLMEQNSTAAFSQ-----------VPMHGWSNQIRQSAGHGGRF 248

Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
           +G SE  TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 EGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271

BLAST of CmUC09G170900 vs. NCBI nr
Match: KAG6589264.1 (Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022963.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 206.1 bits (523), Expect = 2.2e-49
Identity = 106/154 (68.83%), Postives = 117/154 (75.97%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
           +SATTS NFQGYPV+ IL PTDP RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188

Query: 62  IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
           IPAGYEG +AGLWLQQPL+GQNS AAFSQ           +P+ GWS+Q RQ +  GGR 
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VPMHGWSDQIRQSAGHGGRL 248

Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
            G SE  TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 QGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271

BLAST of CmUC09G170900 vs. NCBI nr
Match: XP_022930891.1 (transcription factor TCP10-like [Cucurbita moschata])

HSP 1 Score: 199.1 bits (505), Expect = 2.7e-47
Identity = 103/154 (66.88%), Postives = 115/154 (74.68%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
           +SATTS NFQGYPV+ IL PTDP RDLALSLHN H+S LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDS 188

Query: 62  IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
           IPAGYEG +AGLWLQQPL+GQNS AAFSQ           + + GWS+Q RQ +  GGR 
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VQMHGWSDQIRQSAGHGGRL 248

Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
            G SE  TPSRIRGEG EDGVV G+HSS PNY R
Sbjct: 249 QGPSEFCTPSRIRGEGVEDGVVLGSHSSSPNYHR 271

BLAST of CmUC09G170900 vs. NCBI nr
Match: XP_038877605.1 (transcription factor TCP10-like [Benincasa hispida])

HSP 1 Score: 112.8 bits (281), Expect = 2.6e-21
Identity = 54/64 (84.38%), Postives = 57/64 (89.06%), Query Frame = 0

Query: 1   MSSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISD 60
           MSSAT STNFQGYPVN I RPTDP RDLALSLHN HDS +IPSEEDG+HS ANDQRLI+D
Sbjct: 132 MSSATVSTNFQGYPVNLISRPTDPVRDLALSLHNFHDSRVIPSEEDGSHSTANDQRLIAD 191

Query: 61  SIPA 65
           SIPA
Sbjct: 192 SIPA 195

BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match: A0A6J1JNV1 (transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.8e-50
Identity = 107/154 (69.48%), Postives = 118/154 (76.62%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
           +SATTS NFQGYPV+ IL PTDP RDLALSLHN HDS LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHDSRLIPSEQNANSSPGNYQRLIGDS 188

Query: 62  IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
           IPAGYEG +AGLWLQQPL+ QNS AAFSQ           +P+ GWSNQ RQ +  GGRF
Sbjct: 189 IPAGYEGGDAGLWLQQPLMEQNSTAAFSQ-----------VPMHGWSNQIRQSAGHGGRF 248

Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
           +G SE  TPSRIRGEG EDGVVSG+HSS PNY R
Sbjct: 249 EGPSEFCTPSRIRGEGVEDGVVSGSHSSSPNYHR 271

BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match: A0A6J1ES58 (transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.3e-47
Identity = 103/154 (66.88%), Postives = 115/154 (74.68%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
           +SATTS NFQGYPV+ IL PTDP RDLALSLHN H+S LIPSE++ N SP N QRLI DS
Sbjct: 129 TSATTSINFQGYPVDLILTPTDPPRDLALSLHNFHESRLIPSEQNANSSPGNYQRLIGDS 188

Query: 62  IPAGYEGDEAGLWLQQPLLGQNSAAAFSQRVSVQASLGHSLPIRGWSNQNRQLSVLGGRF 121
           IPAGYEG +AGLWLQQPL+GQNS AAFSQ           + + GWS+Q RQ +  GGR 
Sbjct: 189 IPAGYEGGDAGLWLQQPLMGQNSTAAFSQ-----------VQMHGWSDQIRQSAGHGGRL 248

Query: 122 DGSSELRTPSRIRGEGREDGVVSGTHSSPPNYRR 156
            G SE  TPSRIRGEG EDGVV G+HSS PNY R
Sbjct: 249 QGPSEFCTPSRIRGEGVEDGVVLGSHSSSPNYHR 271

BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match: A0A6J1D1N8 (transcription factor TCP10-like OS=Momordica charantia OX=3673 GN=LOC111016780 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.4e-19
Identity = 65/111 (58.56%), Postives = 71/111 (63.96%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLIPSEEDGNHSPANDQRLISDS 61
           +SATTS NFQGYPV+ IL PTDP  +L LSLHN HDS           SPA       DS
Sbjct: 96  TSATTSINFQGYPVDLILSPTDPPENLRLSLHNFHDS-----------SPA-------DS 155

Query: 62  IPAGYEGDEAGLWLQQPLLGQNS--AAAFSQRVSVQASLGHSLPIRGWSNQ 111
           IP    G++AGLWLQQPLLGQNS  AAAFSQR        HS+PIRGWS Q
Sbjct: 156 IP----GEDAGLWLQQPLLGQNSEAAAAFSQRGP------HSVPIRGWSYQ 178

BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match: A0A6A6K413 (TCP domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_011489 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 67/191 (35.08%), Postives = 87/191 (45.55%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLI--PSEEDGNHSPANDQRLIS 61
           SS T+S NFQGYP + I R T+   DL LSLH   D  LI   S+ D +H+P+NDQ L +
Sbjct: 158 SSTTSSMNFQGYPPDIISRTTNHTEDLGLSLHCFQDQGLIRGQSQADTSHAPSNDQNLFA 217

Query: 62  DSIPAGYEGD-----------------EAGLWLQQP-------LLGQNSAAAFSQRVSVQ 121
            S P GYE +                 + G     P       LLGQ+   AFSQR  +Q
Sbjct: 218 GSAPVGYEANFQRMVAWSNNTSTENRTDGGFAFNSPQMPPPQTLLGQDQ--AFSQRGPLQ 277

Query: 122 ASLGHSLPIRGWSN------------QNRQLSVLGGRF--DGSSELRTPSRIRGEGREDG 153
           +S   S  IR W++            +  Q  + G RF  +G      P+RI GE  +  
Sbjct: 278 SSFAQS--IRAWNDLTMASADHHRTQEIHQSFIFGSRFASEGLPGFSIPTRIHGEEEQSI 337

BLAST of CmUC09G170900 vs. ExPASy TrEMBL
Match: A0A1Q3C6T3 (TCP domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_19463 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.4e-12
Identity = 71/195 (36.41%), Postives = 86/195 (44.10%), Query Frame = 0

Query: 2   SSATTSTNFQGYPVNFILRPTDPARDLALSLHNLHDSPLI--PSEEDGNHSPANDQRLIS 61
           SS  +S NFQ YP + I R T P +DL LSLH   D  LI   ++ D +H+ + DQ L  
Sbjct: 167 SSTASSINFQNYPPDMISRSTIPTQDLGLSLHPFQDPGLIHGQAQGDSSHTNSTDQNLFV 226

Query: 62  DSIPAGYE--------------------GDEAGLWL--------QQPLLGQNSAAAFSQR 121
            S P GYE                    G   G ++        QQ LLGQ S  AFSQR
Sbjct: 227 GSAPVGYEANFQRMVAWSNGTSTENRGGGGSVGGFIFNSLALPHQQALLGQGS--AFSQR 286

Query: 122 VSVQASLGHSLPIRGW------------SNQNRQLSVLGGRF--DGSSELRTPSRIRGEG 153
             +Q+S   S  IR W            +    Q S+LGGRF  DG      P+RI GE 
Sbjct: 287 GPLQSSFAQS--IRSWDDISIASAGHQKTQDMHQPSILGGRFVSDGLPGFCIPARIHGEE 346

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023529225.14.5e-5069.48transcription factor TCP10-like [Cucurbita pepo subsp. pepo][more]
XP_022989259.15.9e-5069.48transcription factor TCP10-like [Cucurbita maxima][more]
KAG6589264.12.2e-4968.83Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG... [more]
XP_022930891.12.7e-4766.88transcription factor TCP10-like [Cucurbita moschata][more]
XP_038877605.12.6e-2184.38transcription factor TCP10-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1JNV12.8e-5069.48transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4... [more]
A0A6J1ES581.3e-4766.88transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE... [more]
A0A6J1D1N83.4e-1958.56transcription factor TCP10-like OS=Momordica charantia OX=3673 GN=LOC111016780 P... [more]
A0A6A6K4131.4e-1235.08TCP domain-containing protein OS=Hevea brasiliensis OX=3981 GN=GH714_011489 PE=4... [more]
A0A1Q3C6T31.4e-1236.41TCP domain-containing protein OS=Cephalotus follicularis OX=3775 GN=CFOL_v3_1946... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 127..141
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 119..155
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..59

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC09G170900.1CmUC09G170900.1mRNA