Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAGCATAATGGCAGGTAATGGCAGGTAATGGTAGGAGGTCTAAACACGTATGACCAAAAGTGGAGGATGCTAAGTTGGTGGAAGCCCTATTGTATTTGGTGGAAACTGATTGGAGGTCCGACAATGGGACGTTTCGACCAGGATACCTACAGCACTTGGAGCGAATGCTGCATGAGAAAGTGCCCGGGTGCGCATTGAACCAGAACATCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAACGTAGTATCAGAGATGTTAAGTCAGTCGGGGTTCGGGTGGAATGAGATGTTCAAATGTGTCCAGGTGGAGAGGGAGATTTTCGATCTTTGGGTTTAGGTAAGATTCTAGAGAAAAATAAAAAATATACTGGTACATGTTATCATATAAATATTAATAATGTTTATGTGTATCAATGCAGAGTCATCCTAGTGCGAAGGGGATGTGGAACAAGTCATTCCCCCATTACGATGAACTTTCCACCGTATTTGTGAAAGAAGAGCAGTAGGACAATCAAGTGAGGCCCCGCACGTGATGGCAACAAATGCATTTAGAGAATTTGAAGATGAGATTCGGCTTAGGTCACAGGACTGTCACACACTTGAGGTTCACCAGACAAAATCACCATTAAATCAAGATGGAATAGATGAAGAGCCAACAGAGCAATCTATAGGTAGAGCGATGTACCTGCCAAGTCATCTCGAGGCAGTAAGAGGAAGAGGCCATCATTCCAAGCTGAAATGATCGACATCATGAGATCAACTGTTAAAATGCAGGACACATACATGGGAAGACTTGCATCGTGGCAGAAGGAAAATTATGAGTTGGAGTTTGGGCGTCGGAAGGAAGTAGTAAACGCCATATACAACATTAATGGCTTGAATGAGGATGATCAGGTCACCCTTATTGACCTCTTTGTCATAGACATTCAGAAGATAAATTGTTTCCTTGGAGTACTGGAACATGCACGGAAGAGGTATTGCCTCTGTCTACTAGGACGAAACATGTAG
mRNA sequence
ATGCAGCATAATGGCAGGTCCGACAATGGGACGTTTCGACCAGGATACCTACAGCACTTGGAGCGAATGCTGCATGAGAAAGTGCCCGGGTGCGCATTGAACCAGAACATCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAACGTAGTATCAGAGATGTTAAGTCAGTCGGGGTTCGGGTGGAATGAGATGTTCAAATGTGTCCAGAGTCATCCTAGTGCGAAGGGGATGTGGAACAAGTCATTCCCCCATTACGATGAACTTTCCACCGTATTTGTGAAAGAAGAGCAGTCACAGGACTGTCACACACTTGAGGTTCACCAGACAAAATCACCATTAAATCAAGATGGAATAGATGAAGAGCCAACAGAGCAATCTATAGGTAGAGCGATGTACCTGCCAAGTCATCTCGAGGCAGACACATACATGGGAAGACTTGCATCGTGGCAGAAGGAAAATTATGAGTTGGAGTTTGGGCGTCGGAAGGAAGTAGTAAACGCCATATACAACATTAATGGCTTGAATGAGGATGATCAGGTCACCCTTATTGACCTCTTTGTCATAGACATTCAGAAGATAAATTGTTTCCTTGGAGTACTGGAACATGCACGGAAGAGGTATTGCCTCTGTCTACTAGGACGAAACATGTAG
Coding sequence (CDS)
ATGCAGCATAATGGCAGGTCCGACAATGGGACGTTTCGACCAGGATACCTACAGCACTTGGAGCGAATGCTGCATGAGAAAGTGCCCGGGTGCGCATTGAACCAGAACATCATTGAGTGCAAGGTGAGGAGTCTGAAGAAACAATACAACGTAGTATCAGAGATGTTAAGTCAGTCGGGGTTCGGGTGGAATGAGATGTTCAAATGTGTCCAGAGTCATCCTAGTGCGAAGGGGATGTGGAACAAGTCATTCCCCCATTACGATGAACTTTCCACCGTATTTGTGAAAGAAGAGCAGTCACAGGACTGTCACACACTTGAGGTTCACCAGACAAAATCACCATTAAATCAAGATGGAATAGATGAAGAGCCAACAGAGCAATCTATAGGTAGAGCGATGTACCTGCCAAGTCATCTCGAGGCAGACACATACATGGGAAGACTTGCATCGTGGCAGAAGGAAAATTATGAGTTGGAGTTTGGGCGTCGGAAGGAAGTAGTAAACGCCATATACAACATTAATGGCTTGAATGAGGATGATCAGGTCACCCTTATTGACCTCTTTGTCATAGACATTCAGAAGATAAATTGTTTCCTTGGAGTACTGGAACATGCACGGAAGAGGTATTGCCTCTGTCTACTAGGACGAAACATGTAG
Protein sequence
MQHNGRSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQSGFGWNEMFKCVQSHPSAKGMWNKSFPHYDELSTVFVKEEQSQDCHTLEVHQTKSPLNQDGIDEEPTEQSIGRAMYLPSHLEADTYMGRLASWQKENYELEFGRRKEVVNAIYNINGLNEDDQVTLIDLFVIDIQKINCFLGVLEHARKRYCLCLLGRNM
Homology
BLAST of CmUC08G147070 vs. NCBI nr
Match:
XP_038896380.1 (uncharacterized protein LOC120084641 [Benincasa hispida])
HSP 1 Score: 310.5 bits (794), Expect = 1.2e-80
Identity = 166/247 (67.21%), Postives = 178/247 (72.06%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQSGFGWNE 65
RSDNGTFR GYLQ+LER+LHEKVPGCALNQN IECKVRSLKKQYN VSEMLSQSGFGWNE
Sbjct: 33 RSDNGTFRLGYLQYLERILHEKVPGCALNQNTIECKVRSLKKQYNAVSEMLSQSGFGWNE 92
Query: 66 MFKCVQ-----------SHPSAKGMWNKSFPHYDELSTVFVKEEQSQDCHTLEVHQTKSP 125
FKCVQ SH +AKGMWNKSF HYD+LSTVF K+ +CHT EV Q +SP
Sbjct: 93 EFKCVQVEKEIFDLWVRSHLNAKGMWNKSFLHYDDLSTVFGKDR--ANCHTPEVCQAESP 152
Query: 126 LNQDGIDEEPTEQSIGRAMYLPSHLEA-----------------------DTYMGRLASW 185
LNQD IDEEP EQS GRA L T+MGRLASW
Sbjct: 153 LNQDEIDEEPAEQSTGRASVLAESSRGSKRKRPSFQAEMIDIMRSTVEMQSTHMGRLASW 212
Query: 186 QKENYELEFGRRKEVVNAIYNINGLNEDDQVTLIDLFVIDIQKINCFLGVLEHARKRYCL 219
QKE YELEFGRRKEVVNAIY+I+GL+EDDQVT IDL V DIQK +CFL V EHARKRYCL
Sbjct: 213 QKEKYELEFGRRKEVVNAIYSIDGLDEDDQVTFIDLLVTDIQKTDCFLAVPEHARKRYCL 272
BLAST of CmUC08G147070 vs. NCBI nr
Match:
XP_038887234.1 (uncharacterized protein LOC120077425 [Benincasa hispida])
HSP 1 Score: 302.0 bits (772), Expect = 4.2e-78
Identity = 163/247 (65.99%), Postives = 176/247 (71.26%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQSGFGWNE 65
RSDNGTFRPGYLQHLE++LHEKVPGCALN+N IECKVRSLKKQYN VSEMLSQSGF WNE
Sbjct: 33 RSDNGTFRPGYLQHLEQILHEKVPGCALNKNTIECKVRSLKKQYNAVSEMLSQSGFNWNE 92
Query: 66 MFKCVQ-----------SHPSAKGMWNKSFPHYDELSTVFVKEEQSQDCHTLEVHQTKSP 125
FKCVQ SHP+AKGMW K FPHYD+LS VF K+ DCHT EV QT+SP
Sbjct: 93 EFKCVQVEREIFDLWVRSHPNAKGMWKKPFPHYDDLSAVFGKDR--ADCHTPEVRQTESP 152
Query: 126 LNQDGIDEEPTEQSIGRAM----------------------YLPSHLE-ADTYMGRLASW 185
LNQD IDEEP EQS GRA + S +E T+MGRLASW
Sbjct: 153 LNQDEIDEEPAEQSTGRASVPTESSRGSKRKRSSFQVEMIDIVKSTVEMQSTHMGRLASW 212
Query: 186 QKENYELEFGRRKEVVNAIYNINGLNEDDQVTLIDLFVIDIQKINCFLGVLEHARKRYCL 219
Q E YELE KEVVNAIYNI+ L E+DQVTLIDL V DIQK +CFL V EHARKRYCL
Sbjct: 213 QNEKYELEL---KEVVNAIYNIDDLEENDQVTLIDLIVTDIQKTDCFLAVPEHARKRYCL 272
BLAST of CmUC08G147070 vs. NCBI nr
Match:
XP_038895773.1 (uncharacterized protein LOC120083935 [Benincasa hispida])
HSP 1 Score: 273.9 bits (699), Expect = 1.2e-69
Identity = 149/228 (65.35%), Postives = 162/228 (71.05%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQSGFGWNE 65
RSDNGTFR YLQHLER+ HEKV GCALNQN IECKVRSLKKQ N VSEMLSQSGF WNE
Sbjct: 71 RSDNGTFRLEYLQHLERIHHEKVLGCALNQNTIECKVRSLKKQCNAVSEMLSQSGFDWNE 130
Query: 66 MFKCVQ-----------SHPSAKGMWNKSFPHYDELSTVFVK----EEQSQDCHTLEVHQ 125
FKCVQ SHP+AKGMWNK FPHYD+LSTVF K + S+D + + +
Sbjct: 131 EFKCVQVEREIFDPWVRSHPNAKGMWNKPFPHYDDLSTVFGKYKAVGQSSEDPYVMTTNA 190
Query: 126 TKSPLNQDGIDEEPTEQSIGRAMYLPSHLEADTYMGRLASWQKENYELEFGRRKEVVNAI 185
+ E E +G H T+MGRLASWQKE YELEFGRRKEVVNAI
Sbjct: 191 FR---------EFEDEIRLGSQ---DCHTPESTHMGRLASWQKEKYELEFGRRKEVVNAI 250
Query: 186 YNINGLNEDDQVTLIDLFVIDIQKINCFLGVLEHARKRYCLCLLGRNM 219
YNI+GL+EDDQVTLIDL V DIQK NCFL V EHARKRYCL LLGRNM
Sbjct: 251 YNIDGLDEDDQVTLIDLLVTDIQKTNCFLAVPEHARKRYCLRLLGRNM 286
BLAST of CmUC08G147070 vs. NCBI nr
Match:
XP_038877407.1 (uncharacterized protein LOC120069696 [Benincasa hispida])
HSP 1 Score: 251.1 bits (640), Expect = 8.5e-63
Identity = 146/247 (59.11%), Postives = 158/247 (63.97%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQSGFGWNE 65
RS G F L K P ALNQN IECKVRSLKKQYN +SEMLSQSGF WNE
Sbjct: 22 RSIMGRFDQDTYNTLSEFCMIKCP--ALNQNTIECKVRSLKKQYNAISEMLSQSGFDWNE 81
Query: 66 MFKCVQ-----------SHPSAKGMWNKSFPHYDELSTVFVKEEQSQDCHTLEVHQTKSP 125
FKCVQ SHP+AKGMWNK FPHYD+LST DCHT EV Q +S
Sbjct: 82 EFKCVQVEREIFNLWVRSHPNAKGMWNKPFPHYDDLST---------DCHTPEVCQIESL 141
Query: 126 LNQDGIDEEPTEQSIGRAM----------------------YLPSHLEA-DTYMGRLASW 185
LNQD IDEEPTEQS GR + S +E T+MGRLASW
Sbjct: 142 LNQDEIDEEPTEQSTGRTSIPVESSRGSKRKRSSFQVEMIDIMRSTVEMHSTHMGRLASW 201
Query: 186 QKENYELEFGRRKEVVNAIYNINGLNEDDQVTLIDLFVIDIQKINCFLGVLEHARKRYCL 219
QK+ YELEFGR+KEVVNAIYNI+GL+ED QVTLIDL V DIQK +CFL V EHA KRYCL
Sbjct: 202 QKKKYELEFGRQKEVVNAIYNIDGLDEDTQVTLIDLVVTDIQKTDCFLAVPEHAWKRYCL 257
BLAST of CmUC08G147070 vs. NCBI nr
Match:
XP_038892629.1 (uncharacterized protein At2g29880-like [Benincasa hispida])
HSP 1 Score: 201.4 bits (511), Expect = 7.7e-48
Identity = 103/147 (70.07%), Postives = 110/147 (74.83%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQSGFGWNE 65
R DNGTFRPGYLQHLE++LHEKVPGCALN N IECKVRSLKKQYN VSEMLSQSG GWNE
Sbjct: 79 RFDNGTFRPGYLQHLEQILHEKVPGCALNHNTIECKVRSLKKQYNAVSEMLSQSGLGWNE 138
Query: 66 MFKCVQ-----------SHPSAKGMWNKSFPHYDELSTVFVKEE---QS------QDCHT 125
FKCV SHP+AK MWNK FPHYD+LST+F K+ QS DCHT
Sbjct: 139 EFKCVHVEREIFDLWVWSHPNAKRMWNKPFPHYDDLSTIFGKDRAVGQSSENPYVMDCHT 198
Query: 126 LEVHQTKSPLNQDGIDEEPTEQSIGRA 133
EV QT+SPLNQD IDEEP EQS GRA
Sbjct: 199 PEVRQTESPLNQDEIDEEPAEQSTGRA 225
BLAST of CmUC08G147070 vs. ExPASy TrEMBL
Match:
A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 83/269 (30.86%), Postives = 125/269 (46.47%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQ-NIIECKVRSLKKQYNVVSEML--SQSGFG 65
RSDNGTF+PGYL L+RM+ EK+PG + + + I+C V+SLKK Y+ ++EM S SGFG
Sbjct: 34 RSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFG 93
Query: 66 WNEMFKC-----------VQSHPSAKGMWNKSFPHYDELSTVFVKEE---------QSQD 125
WNE F+C ++SHP+AKG+ +KSFP+YD+LS VF K+ +
Sbjct: 94 WNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVG 153
Query: 126 CHTLEVHQTKSPLNQDGIDEEPTEQSIGRAM----------------------------- 185
+ + PL ++ PT S G M
Sbjct: 154 SNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGS 213
Query: 186 -------YLPSHLE-ADTYMGRLASWQKENYELEFGRRKEVVNAIYNINGLNEDDQVTLI 215
+ S +E + + +A W KE +E R +VV + +I L D+ L+
Sbjct: 214 ERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLM 273
BLAST of CmUC08G147070 vs. ExPASy TrEMBL
Match:
A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)
HSP 1 Score: 118.2 bits (295), Expect = 4.2e-23
Identity = 83/269 (30.86%), Postives = 125/269 (46.47%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQ-NIIECKVRSLKKQYNVVSEML--SQSGFG 65
RSDNGTF+PGYL L+RM+ EK+PG + + + I+C V+SLKK Y+ ++EM S SGFG
Sbjct: 34 RSDNGTFQPGYLAQLQRMMAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFG 93
Query: 66 WNEMFKC-----------VQSHPSAKGMWNKSFPHYDELSTVFVKEE---------QSQD 125
WNE F+C ++SHP+AKG+ +KSFP+YD+LS VF K+ +
Sbjct: 94 WNEEFQCIIAERDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVG 153
Query: 126 CHTLEVHQTKSPLNQDGIDEEPTEQSIGRAM----------------------------- 185
+ + PL ++ PT S G M
Sbjct: 154 SNVSNMFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGS 213
Query: 186 -------YLPSHLE-ADTYMGRLASWQKENYELEFGRRKEVVNAIYNINGLNEDDQVTLI 215
+ S +E + + +A W KE +E R +VV + +I L D+ L+
Sbjct: 214 ERYETVEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLM 273
BLAST of CmUC08G147070 vs. ExPASy TrEMBL
Match:
A0A5A7U216 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G001370 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 6.0e-22
Identity = 76/246 (30.89%), Postives = 118/246 (47.97%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQ--SGFGW 65
RSDNGTFRPGYL L RM+ K+PGC ++ + I+ +++ +K+ ++ ++EM SGFGW
Sbjct: 34 RSDNGTFRPGYLNQLARMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW 93
Query: 66 NEMFKCV---------QSHPSAKGMWNKSFPHYDELSTVFVKEEQSQD-CHTLEVHQTKS 125
N+ KC+ SHP+AKG+ NKSF HYDELS VF K+ + + +
Sbjct: 94 NDEKKCIIAEKEVFDDWSHPAAKGLLNKSFVHYDELSYVFGKDPATGGRAESFTDIGSND 153
Query: 126 PLNQDGIDEEPTEQSIGRAMYLPS-HLEADTYM-GRLASWQKENYELEFGR--------- 185
P D + + MY P ++ D M R A W +E+G
Sbjct: 154 PAGYDAFAADAVPDTDFPPMYSPGLNMSPDDLMETRTARWDIVRTAVEYGNEQLHRIAEW 213
Query: 186 -----------RKEVVNAIYNINGLNEDDQVTLIDLFVIDIQKINCFLGVLEHARKRYCL 218
R+E+V + I L D+ L+ + + ++ + FL V ++ YC
Sbjct: 214 PILQRQDATQTRQEIVRQLEAIPELTLMDRCRLMRIIMRNVDDMKAFLEVPDNMNYPYCS 273
BLAST of CmUC08G147070 vs. ExPASy TrEMBL
Match:
A0A5D3CH30 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold66G00140 PE=4 SV=1)
HSP 1 Score: 112.5 bits (280), Expect = 2.3e-21
Identity = 72/237 (30.38%), Postives = 119/237 (50.21%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCALNQNIIECKVRSLKKQYNVVSEMLSQ--SGFGW 65
RSDNGTFRPGYL L RM+ K+PGC ++ + I+ +++ +K+ ++ ++EM SGFGW
Sbjct: 30 RSDNGTFRPGYLNQLARMMAFKIPGCNIHASTIDSRIKLMKRMFHALAEMRGPNCSGFGW 89
Query: 66 NEMFKCV---------QSHPSAKGMWNKSFPHYDELSTVFVKEE-------------QSQ 125
N+ KC+ SHP+ KG+ NKSF HYDELS VF K+ +
Sbjct: 90 NDEKKCIVAEKEVFDDWSHPTVKGLLNKSFVHYDELSYVFGKDRATGGRAESFADIGSND 149
Query: 126 DCHTLEVHQTKSPLNQDGIDEEPTEQSIGRAMYLPSHLE-ADTYMGRLASWQKENYELEF 185
T V + ++ G + T +I + + +E + + R+A W +
Sbjct: 150 PAGTARVSERRNV--SSGSKRKRTGHAIDSGDIVRTAIEYGNEQLHRIAEWLILQRQDAT 209
Query: 186 GRRKEVVNAIYNINGLNEDDQVTLIDLFVIDIQKINCFLGVLEHARKRYCLCLLGRN 218
R+E+V + I L D+ L+ + + ++ + FL V ++ + YC +L N
Sbjct: 210 QTRQEIVRQLEAIPELTLMDRCRLMRILMRNVDDMKAFLEVPDNMKYPYCSIILQEN 264
BLAST of CmUC08G147070 vs. ExPASy TrEMBL
Match:
A0A6V7P4Z9 (Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=296719 GN=CB5_LOCUS9081 PE=4 SV=1)
HSP 1 Score: 108.2 bits (269), Expect = 4.3e-20
Identity = 79/260 (30.38%), Postives = 118/260 (45.38%), Query Frame = 0
Query: 6 RSDNGTFRPGYLQHLERMLHEKVPGCAL-NQNIIECKVRSLKKQYNVVSEML--SQSGFG 65
R+DNGTFR GYLQ LER +HEK+P C L IE + + K+QYN + EML S SGFG
Sbjct: 65 RADNGTFRNGYLQQLERWMHEKIPDCELKGVPHIESRFKLWKRQYNAIFEMLGPSASGFG 124
Query: 66 WNEMFKCVQ-----------SHPSAKGMWNKSFPHYDELSTVFVK--------EEQSQDC 125
W++ KCV+ SHP+A G+ KSFP+++ELS VF K E +
Sbjct: 125 WSDKNKCVECDKNVYDNWVKSHPNAVGLRGKSFPYFEELSIVFGKDRATGIAAESPADAV 184
Query: 126 HTLEVHQTKSPLNQDGIDEE-----------PTEQSIGRAMYLPSHLEA--DTYMGRLAS 185
+E +T + DEE PT S G++ + D + +
Sbjct: 185 ANIEGEETNQRASAQNPDEEMAIADESSGLGPTNSSAGQSRKTRKRRSSATDDSINESFN 244
Query: 186 WQKENYELEFG---------------------RRKEVVNAIYNINGLNEDDQVTLIDLFV 210
+ E FG R++++ + + GL + D++ D+ +
Sbjct: 245 ATLRSIESMFGNASESISKLAGCFQFMATDAIRKEKLFEELLKVEGLVDKDRMIAYDILI 304
BLAST of CmUC08G147070 vs. TAIR 10
Match:
AT4G02550.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 370 Blast hits to 300 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 10; Plants - 354; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink). )
HSP 1 Score: 41.6 bits (96), Expect = 9.6e-04
Identity = 34/123 (27.64%), Postives = 55/123 (44.72%), Query Frame = 0
Query: 41 KVRSLKKQYNVVSEMLSQSGFGWN---EMFKC---------VQSHPSAKGMWNKSFPHYD 100
+++++KK+Y V+ ++LS+ GF WN +M C + +P AK K Y+
Sbjct: 76 RLKTIKKRYRVMRDILSRDGFWWNSSTKMIDCESDELWRRYIAVNPDAKAFRGKQIEMYE 135
Query: 101 ELSTVF-----------VKEEQS---QDCHTLEVHQTKSPL--NQDGIDEEPTEQSIGRA 136
EL TV VK+E S D E PL +++ D + TE G +
Sbjct: 136 ELRTVCGDYQTPGKYNKVKKESSHHLNDVKQFEEDSVSFPLGSSEEHSDTDGTESYAGAS 195
BLAST of CmUC08G147070 vs. TAIR 10
Match:
AT4G02550.3 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )
HSP 1 Score: 41.6 bits (96), Expect = 9.6e-04
Identity = 34/123 (27.64%), Postives = 55/123 (44.72%), Query Frame = 0
Query: 41 KVRSLKKQYNVVSEMLSQSGFGWN---EMFKC---------VQSHPSAKGMWNKSFPHYD 100
+++++KK+Y V+ ++LS+ GF WN +M C + +P AK K Y+
Sbjct: 91 RLKTIKKRYRVMRDILSRDGFWWNSSTKMIDCESDELWRRYIAVNPDAKAFRGKQIEMYE 150
Query: 101 ELSTVF-----------VKEEQS---QDCHTLEVHQTKSPL--NQDGIDEEPTEQSIGRA 136
EL TV VK+E S D E PL +++ D + TE G +
Sbjct: 151 ELRTVCGDYQTPGKYNKVKKESSHHLNDVKQFEEDSVSFPLGSSEEHSDTDGTESYAGAS 210
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7U0H7 | 4.2e-23 | 30.86 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A1S3B4L3 | 4.2e-23 | 30.86 | uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... | [more] |
A0A5A7U216 | 6.0e-22 | 30.89 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3CH30 | 2.3e-21 | 30.38 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A6V7P4Z9 | 4.3e-20 | 30.38 | Myb_DNA-bind_3 domain-containing protein OS=Ananas comosus var. bracteatus OX=29... | [more] |
Match Name | E-value | Identity | Description | |
AT4G02550.1 | 9.6e-04 | 27.64 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |
AT4G02550.3 | 9.6e-04 | 27.64 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... | [more] |