CmUC08G142930 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC08G142930
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	Integrase catalytic domain-containing protein
Location	CmU531Chr08: 722032 .. 722310 (-)
RNA-Seq Expression	CmUC08G142930
Synteny	CmUC08G142930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGCAGCTTGTTATGCAAGATGCTCGTGTGATCAAGAAGATTCTCCACTTTCTCAACAAAACGTTTGACCATGTGGTGCTAGCAATCAAGGAGTCAAAAAACTTGGAGACGATGACTATTGATGAATTAAATGGATCACTCCGAGTTTACAAGGAAAGGATGAACCGTGGCAACCCGAAGCAACTGGAGCAAGTCTTGCAAGCAAAGATGACTTGCAAAAGAGATGGTGGACGAGGTTGTGGTCATGATTATGGAAGAGGTCGAGGCCACAAATGA

mRNA sequence

ATGAAGCAGCTTGTTATGCAAGATGCTCGTGTGATCAAGAAGATTCTCCACTTTCTCAACAAAACGTTTGACCATGTGGTGCTAGCAATCAAGGAGTCAAAAAACTTGGAGACGATGACTATTGATGAATTAAATGGATCACTCCGAGTTTACAAGGAAAGGATGAACCGTGGCAACCCGAAGCAACTGGAGCAAGTCTTGCAAGCAAAGATGACTTGCAAAAGAGATGGTGGACGAGGTTGTGGTCATGATTATGGAAGAGGTCGAGGCCACAAATGA

Coding sequence (CDS)

ATGAAGCAGCTTGTTATGCAAGATGCTCGTGTGATCAAGAAGATTCTCCACTTTCTCAACAAAACGTTTGACCATGTGGTGCTAGCAATCAAGGAGTCAAAAAACTTGGAGACGATGACTATTGATGAATTAAATGGATCACTCCGAGTTTACAAGGAAAGGATGAACCGTGGCAACCCGAAGCAACTGGAGCAAGTCTTGCAAGCAAAGATGACTTGCAAAAGAGATGGTGGACGAGGTTGTGGTCATGATTATGGAAGAGGTCGAGGCCACAAATGA

Protein sequence

MKQLVMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQVLQAKMTCKRDGGRGCGHDYGRGRGHK

Homology

[Close]

BLAST of CmUC08G142930 vs. NCBI nr
Match: KAF5442054.1 (hypothetical protein F2P56_036921, partial [Juglans regia])

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 6   MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQ 65
           ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ
Sbjct: 128 LEDVRVVEKILRSLNFKFDHIVVAIEESKDLEIMSIDELNGSLRAHEERMNRGKQEQVEQ 187

Query: 66  VLQAKMTCK------RDGGRGCGHDYGRGRG 91
            LQAK++ K       +G RG G   GRGRG
Sbjct: 188 ALQAKLSLKDKGEACENGRRGQGRGRGRGRG 218

[Close]

BLAST of CmUC08G142930 vs. NCBI nr
Match: XP_035543079.1 (uncharacterized protein LOC118346300, partial [Juglans regia])

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 6   MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQ 65
           ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ
Sbjct: 128 LEDVRVVEKILRSLNFKFDHIVVAIEESKDLEIMSIDELNGSLRAHEERMNRGKQEQVEQ 187

Query: 66  VLQAKMTCK------RDGGRGCGHDYGRGRG 91
            LQAK++ K       +G RG G   GRGRG
Sbjct: 188 ALQAKLSLKDKGEACENGRRGQGRGRGRGRG 218

[Close]

BLAST of CmUC08G142930 vs. NCBI nr
Match: KAF5480099.1 (hypothetical protein F2P56_000869, partial [Juglans regia])

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 6   MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQ 65
           ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ
Sbjct: 128 LEDVRVVEKILRSLNFKFDHIVVAIEESKDLEIMSIDELNGSLRAHEERMNRGKQEQVEQ 187

Query: 66  VLQAKMTCK------RDGGRGCGHDYGRGRG 91
            LQAK++ K       +G RG G   GRGRG
Sbjct: 188 ALQAKLSLKDKGEACENGRRGQGRGRGRGRG 218

[Close]

BLAST of CmUC08G142930 vs. NCBI nr
Match: KZV30698.1 (hypothetical protein F511_19491 [Dorcoceras hygrometricum])

HSP 1 Score: 95.1 bits (235), Expect = 3.3e-16
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1   MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRG 60
           MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G
Sbjct: 121 MKRLGEALPDVRVVEKILRSLNSKFNHVVVAIEESKDLEAMTVDELNGSLRAHEERMNHG 180

Query: 61  NPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG 91
             +Q+E VLQAK   K  GG   RG G   GRGRG
Sbjct: 181 KQEQVEHVLQAKTNYKPRGGSYSRGRGQGRGRGRG 215

[Close]

BLAST of CmUC08G142930 vs. NCBI nr
Match: XP_016195705.1 (uncharacterized protein LOC107636724 [Arachis ipaensis] >XP_025647832.1 uncharacterized protein LOC112742810 [Arachis hypogaea])

HSP 1 Score: 94.4 bits (233), Expect = 5.6e-16
Identity = 49/94 (52.13%), Postives = 70/94 (74.47%), Query Frame = 0


Query: 6   MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQ 65
           ++D RV++KI+ FLN  F HVV+AI+ESK+L+TM+ID+LNGSLR ++ERM++G  +++E 
Sbjct: 155 LEDVRVVEKIVRFLNSKFYHVVVAIEESKDLDTMSIDQLNGSLRAHEERMDKGKQERVEH 214

Query: 66  VLQAKMTCKRDG--------GRGCGHDYGRGRGH 92
           VLQAK++    G        GRG GH  GRGRG+
Sbjct: 215 VLQAKLSWNARGETNESERQGRGRGHGRGRGRGY 248

[Close]

BLAST of CmUC08G142930 vs. ExPASy TrEMBL
Match: A0A6P9E6H1 (uncharacterized protein LOC118346300 OS=Juglans regia OX=51240 GN=LOC118346300 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.2e-17
Identity = 52/91 (57.14%), Postives = 68/91 (74.73%), Query Frame = 0


Query: 6   MQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRGNPKQLEQ 65
           ++D RV++KIL  LN  FDH+V+AI+ESK+LE M+IDELNGSLR ++ERMNRG  +Q+EQ
Sbjct: 128 LEDVRVVEKILRSLNFKFDHIVVAIEESKDLEIMSIDELNGSLRAHEERMNRGKQEQVEQ 187

Query: 66  VLQAKMTCK------RDGGRGCGHDYGRGRG 91
            LQAK++ K       +G RG G   GRGRG
Sbjct: 188 ALQAKLSLKDKGEACENGRRGQGRGRGRGRG 218

[Close]

BLAST of CmUC08G142930 vs. ExPASy TrEMBL
Match: A0A2Z7BF03 (Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_19491 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.6e-16
Identity = 55/95 (57.89%), Postives = 68/95 (71.58%), Query Frame = 0


Query: 1   MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRG 60
           MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G
Sbjct: 121 MKRLGEALPDVRVVEKILRSLNSKFNHVVVAIEESKDLEAMTVDELNGSLRAHEERMNHG 180

Query: 61  NPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG 91
             +Q+E VLQAK   K  GG   RG G   GRGRG
Sbjct: 181 KQEQVEHVLQAKTNYKPRGGSYSRGRGQGRGRGRG 215

[Close]

BLAST of CmUC08G142930 vs. ExPASy TrEMBL
Match: A0A2Z7BQJ1 (Integrase, catalytic core domain containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_34589 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRG 60
          MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G
Sbjct: 1  MKRLGEALPDVRVVEKILRSLNSKFNHVVVAIEESKDLEAMTVDELNGSLRAHEERMNHG 60

Query: 61 NPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG 91
            +Q E VLQAK   K  GG   RG G   GRGRG
Sbjct: 61 KQEQAEHVLQAKTNYKPRGGSSSRGRGQGRGRGRG 95

[Close]

BLAST of CmUC08G142930 vs. ExPASy TrEMBL
Match: A0A2Z7BMK3 (Integrase, catalytic core domain containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_18187 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 2.7e-16
Identity = 55/95 (57.89%), Postives = 67/95 (70.53%), Query Frame = 0


Query: 1  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRG 60
          MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE MT+DELNGSLR ++ERMN G
Sbjct: 1  MKRLGEALPDVRVVEKILRSLNSKFNHVVVAIEESKDLEAMTVDELNGSLRAHEERMNHG 60

Query: 61 NPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG 91
            +Q E VLQAK   K  GG   RG G   GRGRG
Sbjct: 61 KQEQAEHVLQAKTNYKPRGGSSSRGRGQGRGRGRG 95

[Close]

BLAST of CmUC08G142930 vs. ExPASy TrEMBL
Match: A0A2Z7CD47 (CCHC-type domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_33023 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.7e-14
Identity = 52/95 (54.74%), Postives = 64/95 (67.37%), Query Frame = 0


Query: 1  MKQL--VMQDARVIKKILHFLNKTFDHVVLAIKESKNLETMTIDELNGSLRVYKERMNRG 60
          MK+L   + D RV++KIL  LN  F+HVV+AI+ESK+LE M +DEL GSLR ++ERMN G
Sbjct: 1  MKRLGEALPDVRVVEKILRSLNSKFNHVVVAIEESKDLEAMMVDELLGSLRAHEERMNHG 60

Query: 61 NPKQLEQVLQAKMTCKRDGG---RGCGHDYGRGRG 91
            +Q   VLQAK   K  GG   RG G   GRGRG
Sbjct: 61 KQEQAGHVLQAKTNYKPRGGSSSRGRGQGRGRGRG 95

The following BLAST results are available for this feature:

BLAST of CmUC08G142930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF5442054.1	8.7e-17	57.14	hypothetical protein F2P56_036921, partial [Juglans regia]	[more]
XP_035543079.1	8.7e-17	57.14	uncharacterized protein LOC118346300, partial [Juglans regia]	[more]
KAF5480099.1	8.7e-17	57.14	hypothetical protein F2P56_000869, partial [Juglans regia]	[more]
KZV30698.1	3.3e-16	57.89	hypothetical protein F511_19491 [Dorcoceras hygrometricum]	[more]
XP_016195705.1	5.6e-16	52.13	uncharacterized protein LOC107636724 [Arachis ipaensis] >XP_025647832.1 uncharac...	[more]

BLAST of CmUC08G142930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CmUC08G142930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6P9E6H1	4.2e-17	57.14	uncharacterized protein LOC118346300 OS=Juglans regia OX=51240 GN=LOC118346300 P...	[more]
A0A2Z7BF03	1.6e-16	57.89	Uncharacterized protein OS=Dorcoceras hygrometricum OX=472368 GN=F511_19491 PE=4...	[more]
A0A2Z7BQJ1	2.7e-16	57.89	Integrase, catalytic core domain containing protein OS=Dorcoceras hygrometricum ...	[more]
A0A2Z7BMK3	2.7e-16	57.89	Integrase, catalytic core domain containing protein OS=Dorcoceras hygrometricum ...	[more]
A0A2Z7CD47	9.7e-14	54.74	CCHC-type domain-containing protein OS=Dorcoceras hygrometricum OX=472368 GN=F51...	[more]

BLAST of CmUC08G142930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 4..91
None	No IPR available	PANTHER	PTHR34222:SF30	SUBFAMILY NOT NAMED	coord: 4..91

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC08G142930.1	CmUC08G142930.1	mRNA