CmUC07G128160 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC07G128160
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	protein LOW PSII ACCUMULATION 1, chloroplastic
Location	CmU531Chr07: 1609383 .. 1614228 (+)
RNA-Seq Expression	CmUC07G128160
Synteny	CmUC07G128160

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTTTCCCTTTCCACGCTCAACATTTCCTCCTGCAACAACATTGCTCGGCCTCCTCATTTCTCTCGCACTCCCACCCATAACGCTTCCGATTTCAAATTCTGCCGCCGTATCTCCTGCCAGGTTCATCGGAAGACTGTCTCCTTTAATTCTAGCCCTAGTCTTCCAGATTCGCTTCCTTCTCTTCACTACGCCAGACGGAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGGTTCTTCTCTCTTTCTCTGTTGTGGTAGTGTATACAATGGAACAACAATGGCTGATGATTTTAATCCTATTATGAATTTTACATCTAAGCACTTGGCATTTGGTTGATTTTCGGTAGTTTTATGTTATTTTTCTTTTGTTCATGAGATTATGTGTTTGGATGGCCAAAAACCAACATATATTTGTGGAAATTAGGAGGGTCATGCCTGGATTCTTATATGAATTTTGCATTTGTGTATTTCCAATCGAGTATTATCACAACTTGGTGACTTCTTCATATTTTATGCCTTGAGCTACAATGCTTGTCTGCGTTTCTCTTTCTCATATATGTTATCTGATCACAACCTTATTTGTATATGCTTGGTATCCATTCGGTTTTTTTGGTTTTTCGTTCATGAAAATTAAAATTCTTAAACTAATACTTTTTTAATTTTCAGAACATGGCTTGTTTTCTAAAACATTAGTAGAAAGTAGATAACTAAACAAGAAATCTAGAGTTGGAAGGAGTGAATATAGGCTTAATTTTCAAAAACTAAGAACCAAAAATCATTTCCAAATCAGGCTTAAGCTATTTGATTTGATCAACGTATAACGGTTTCAAATTCAGCCAGAAGGAACGGTTTATGTCTAGTTGAACTAAAAAAGTAACCATTATATTAACAAATGCATTGAATATTCAATTAGGAGAATAACTTATCCTAGTCTTCTTTCTGATTACCAACAATGGCATTTACAACCCCGTTGATAATCATTCAGTTATGTTATTTTAGTTTTTTTTTTTCCTTTCTTTTTTTTTTTTATTTTTTAAATTGTGCTCATTTTCTTGCTCTTTCATCACAATGGACTTTATCTTTCTTTAAGGTAACCATTGAAATCTTAGCCAAATTCCAAAACAAAAATAAGTTTAAAAAAGTTAATTCTTTTTTTTAGTTTTCAAGACTTTGACATGGATCTTTGTACAAAAGAAGAGACTTGACATAGATTTTGAAAATATTGTTCAAGAATAGATAACAAAATAAAGAAACTCAGGTGGAAATAGTGTTTATAAGCTAAATTTTCAAAAACAAAAAACCAAAGACTAAGACCTCGTTTGATAACGATTTCGATTTTAGTTTTAGTTTTTGAAATTTATGCTTGTTTTCTCCTAATTTCTTTACAATGGTTTTCACCTTTCTTAATCATTTGAATTGGTAGTCAAGTTTCAAAAATAAGTTTGTAAAAACTACTTTTTGCCATCTTTAAAACTTGGCTTTGTTTCTGAAAATATTGGTAGAAAGTGAATAGCAAAACAAAGAGAAGTACAGGTGGGAATAGTGTTTATAACCTTGATTTTCAAAAACCATATGGTTATCAAACGAAGTCACCAGTTTTCTGATGATGTGTTTATTTTTTTGGGGGAGCTGAGACTTGAGTGAGCCTGGTTGTGTTCCAACCTAGTGTCTCTTTTTCCATTACGCCTGCTATTCAACCTGAAATATGGCGTTGTGTAACTGTATCTGGTTTTCTTCTTAGTTCCACTGCCAGGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTTGGAGCTGTAGTGCTTTTCGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTGAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGAGGGGTTTTAGTCGTACCCCTTGCCACAGATCTCAGTACACTGAAATTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTAAGTAATATAATTAACATCCATTTTCACAAGTGTTCCCCTTCTCGTTCCCTCATGTAATTTGCCTTTTCTTGTAGGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCACCTCTGATTCACCTGTGTAAGTCGTCCTTCTTGTTAAACTTTGAATTCAAATTGATGTAGTAAATTGGTTACCTTTCTAATGCTTGAACTCCCAATCAAGTTATGCTGTGGTAATAATCGTTTGGTTTAAATACAACTTTGAGCCCAGTATATTTTGATTGTTGTACAATCAATTTATTCCCTTTAGTTTTAACAAGTGGCCATTTTGATCCCTATGTGCAGATGTTTAATATAATTTGTATACATAATAGAACCCTCTAATATGAATTTATGACTACATGTGAAGAAATTTAGTGAAGGAATCGTAATAAAATGAAATGAAAATAAAAATGAAGGGAAGAAAAGAGACCAAAATTGGCATTTTGAAAGTACATGCACCAAAATAGACAAAAGTTGAAAGTCATGGACTAAAAAGAAGAATTTAAACCTAAACTTTTTCTCTGCTTAGTTTCTTAATGAAATATATTGTTTCATTAATCATCATTCATGAGCCATCCAATTTGGAGTCCCCATAGTTGGTAATGTAAGGTGCACAGAAAAAAAAAAAAAAAGGAAAGGAACGGAAATGAACTCTTTTGCTGTATCCATGCCAAAACTAGTTCACCTTACAGAAGTTAACCAAAGTAGAATTTGAACCTAAATTTTTTCTATGTTGATGTTTGTTCTTGTAGGTATCTATCTCTGCGAATGGATGGCCGCGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTAAAAGGGCTATGGTCAGGTCTCCTAGATGGGATGGATGGGAGAGTTCTTTGAAGAAAAACACTTCCTCTTCTTCCAAGTGAGTATTCTTTGAATCACTCCATTAATTATTTATAACTATATTTTCACTTGAACCTAAATAACATTGTTTTTCTTCCAGAATCTAAAAAAGTGGCAGGAAAACTTAATTCTTTCTAAATAAGTGGAGAAAAATTAAAGTAAAAAACGAGAAATGAAAAATCTCTATACATTTGATTCCAACATTTTTCTTTAATATTATGGTAATCCTTGTATTTCAGTATTCTTCTACACAGGTAAAGATTATGCAGTAATAGTTGGAAGATGAAATCGTAACAGAGGGTTTAAAATTGATTCACTTACAAGAGTTTACAGAATTAATCAAACAATCATTAGCGGGGGTTCTACGTGATACAAATAAAACTTCCTAAGTTTTAAAAGTTGAAATTAATTTTTTCTCCATTTATTTGAAACTATAAGAACATGCTTTTTGTGGTCAAATCTTCCATTTTAATGATTGAGATGAGCTTAAATCTACTCTGTGATCTCCTTTTGAGCTGGCATCAAAACTCCCATATCTAATTCAAGTCCTATTTGTTTCAACTTTCAAGGAACTACAGATTCTCTTGTCATATATATATGTATATATATAAACAGAATCCACTTTTTAAGAAATAAGGTCAATAATGATGTTACTTCAGTAATTTTGGCTTTTTTTTGTATACAAACTTAATGTCAAACTATAGGGCAGAATCATATTGTTGAGCTGTTGCCAAATTTCTTGCCACAAACAAGAACATTGTGGCCTTGTTATATTAACTATTTTTATATTAACATTTTTGTTTATAAGTTTCTGTTTTTCAAATTTATTTTGCCCCTAAAGCTCCAATTTTCTTATTATGATTTTCACTTTTTTTTTTCTTTTTTTTAAGAGAACTGCTTGAGTTAATAATAATAATAATAATAATTTTTTTAAAAAAATTAAAAATTACTTTTCTTGTTTAAAAATTTGGCACGGTTTTAAAAAATGTTAGTAGAAAGTGGATAACAAAATATAGAAATAGAAATTTATGGGTAAAATTAGTTTATAAACTTATGCCTGCTACTGATGATACTCCCTAATTTTCAAAAACTAAAAACTAAGGCATGTTTGAGAATCATTTGGTTTTTTGTTTCGAATTGACAACCATTTGGTTTTTTGTTTCGAAAGCTAAGCTTATAAACATTACTTTCACCCATAAGTTTCTATGCTTTGTTATACACGCACTACTAGCGTTCTCATAAAGAAAAGTTAAATTTTAAAAACTAAAGAAAGTAGTTTCTTTAGGAATTCAAGTCTTTCTTTAACAAAGGTGAAAGGAATGATTGAAAAATTGGGAAGAAACAAGTCTAAATTAAGAAACAAGCATAAATTTCGAAAACAAAAAACTAAAAACGAATTTGTGCCTAAATGGTTGGTTATTAAACAGGATCTTATTAATCTGTTCTTGTTTTCCAACCTTGTTCTTAAACAGATACTCGAATTAGCATGGAGTGGAGTAAAGTTTTGGTATCATCTTTAAGCCATCCTGGGTGCTTCTACTACAAAAGCTCCAACACCATTGTCAAGCTGGACTGCCTGA

mRNA sequence

ATGGCGGTTTCCCTTTCCACGCTCAACATTTCCTCCTGCAACAACATTGCTCGGCCTCCTCATTTCTCTCGCACTCCCACCCATAACGCTTCCGATTTCAAATTCTGCCGCCGTATCTCCTGCCAGGTTCATCGGAAGACTGTCTCCTTTAATTCTAGCCCTAGTCTTCCAGATTCGCTTCCTTCTCTTCACTACGCCAGACGGAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGCCTGGTTGTGTTCCAACCTAGTGTCTCTTTTTCCATTACGCCTGCTATTCAACCTGAAATATGGCGTTGTGTAACTGTATCTGGTTTTCTTCTTAGTTCCACTGCCAGGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTTGGAGCTGTAGTGCTTTTCGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTGAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGAGGGGTTTTAGTCGTACCCCTTGCCACAGATCTCAGTACACTGAAATTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCACCTCTGATTCACCTGTGTATCTATCTCTGCGAATGGATGGCCGCGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTAAAAGGGCTATGGTCAGCCATCCTGGGTGCTTCTACTACAAAAGCTCCAACACCATTGTCAAGCTGGACTGCCTGA

Coding sequence (CDS)

ATGGCGGTTTCCCTTTCCACGCTCAACATTTCCTCCTGCAACAACATTGCTCGGCCTCCTCATTTCTCTCGCACTCCCACCCATAACGCTTCCGATTTCAAATTCTGCCGCCGTATCTCCTGCCAGGTTCATCGGAAGACTGTCTCCTTTAATTCTAGCCCTAGTCTTCCAGATTCGCTTCCTTCTCTTCACTACGCCAGACGGAATTTAGCTAACTTCACTTGCTCGGCTGCTGATAAACCGGAAATCAGCCTGGTTGTGTTCCAACCTAGTGTCTCTTTTTCCATTACGCCTGCTATTCAACCTGAAATATGGCGTTGTGTAACTGTATCTGGTTTTCTTCTTAGTTCCACTGCCAGGATAAGAAGTGAAGTTCTGTCTCCATTTCGGTCTGTTCGGATGTTCTTTTATCTCACTTTCATTGCTAGTGGTACATTGGGAGGACTGATAGCAACCACTCAATTGCTTGCTGCATTGGCAAACTCATCAAGAGCTGAAGAAGTCCCTGATATTCTAAAAGGACTTGGAATAGACTTTGGAGCTGTAGTGCTTTTCGCATTTCTTTATTTCAGAGAGAACAATGCAAAAAATGCTCAGTTGGCTAGACTGTCAAGAGAAGAAAGCCTTTCCAATTTGAAGCTTCGAGTGGACCAAAACAAAGTTATTCCCATCAGCACTTTGCGTGGGATTGCTCGTCTGGTAATTTGTGCTGGCCCTGAATCCTTTATCATGGAAGCTTTTAAATCAAGTGAACCTTTCACTGAACGACTTCTAGAACGAGGGGTTTTAGTCGTACCCCTTGCCACAGATCTCAGTACACTGAAATTTGAGTTTGATGAACGTGAAGAGGTGAAGGATATAACCACCAAAAGGAAAAGACTCTGGCGCTTGACTCCAGTTTACATGACTGAGTGGTCGGCGTGGTTAGATGAACAAAAGAAGTTGGCTGGAGTCACCTCTGATTCACCTGTGTATCTATCTCTGCGAATGGATGGCCGCGTTCGTGGTAGCGGTGTTGGCTATCCTCCATGGAATGCTCTTGTTGCACAATTACCACCTGTAAAAGGGCTATGGTCAGCCATCCTGGGTGCTTCTACTACAAAAGCTCCAACACCATTGTCAAGCTGGACTGCCTGA

Protein sequence

MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSLPSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTARIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSAILGASTTKAPTPLSSWTA

Homology

[Close]

BLAST of CmUC07G128160 vs. NCBI nr
Match: XP_038888898.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida])

HSP 1 Score: 589.7 bits (1519), Expect = 1.8e-164
Identity = 310/362 (85.64%), Postives = 317/362 (87.57%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           MAVSLST NISSCNNI RPPHFSRT     SDFKF RRI C VHRKT+SFNSSP+LPDSL
Sbjct: 1   MAVSLSTPNISSCNNITRPPHFSRT-----SDFKFRRRICCHVHRKTLSFNSSPTLPDSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
           PSLHYARRNLANFTCSAADKPEI                                SSTA+
Sbjct: 61  PSLHYARRNLANFTCSAADKPEI--------------------------------SSTAK 120

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG
Sbjct: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
Sbjct: 181 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SFIMEAFKSSEPFTERLLERGVLVVPLATD+STL FEFDEREEVKD+TTKRKRLWRLTPV
Sbjct: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDVSTLNFEFDEREEVKDMTTKRKRLWRLTPV 300

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 301 YMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 325

Query: 361 IL 363
           +L
Sbjct: 361 LL 325

[Close]

BLAST of CmUC07G128160 vs. NCBI nr
Match: XP_004152010.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hypothetical protein Csa_017553 [Cucumis sativus])

HSP 1 Score: 564.3 bits (1453), Expect = 7.9e-157
Identity = 297/362 (82.04%), Postives = 310/362 (85.64%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           MAVSL T +ISS NNIA PPHFS TP+HNASDFKF RR  C+VHRKTVSF+SSP LP SL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
             L Y RRNLANF CSAADKPEI                                SSTA+
Sbjct: 61  RFLVYGRRNLANFICSAADKPEI--------------------------------SSTAK 120

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFG
Sbjct: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFG 180

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPE
Sbjct: 181 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPE 240

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SFI+EAFKSSEPFTERLLERGVLVVPLATD++TL FEFD+REEVKDITTKRKRLWRLTPV
Sbjct: 241 SFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPV 300

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 330

Query: 361 IL 363
           +L
Sbjct: 361 LL 330

[Close]

BLAST of CmUC07G128160 vs. NCBI nr
Match: KAG7011306.1 (Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 562.0 bits (1447), Expect = 3.9e-156
Identity = 294/362 (81.22%), Postives = 313/362 (86.46%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           M VS++   I SCNN  RPPH SRT +HNA + KFCRRI C VHR  VSFN  PS+ DSL
Sbjct: 57  MVVSMAI--IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNRVSFNFGPSVADSL 116

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
             L Y  R+LA+ TCSA+DKPEIS            TP IQ E+  CVTVS F LSSTA+
Sbjct: 117 RYLKY--RDLASVTCSASDKPEIS------------TPVIQYEMRLCVTVSVFFLSSTAK 176

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFG
Sbjct: 177 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFG 236

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Sbjct: 237 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPE 296

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPV
Sbjct: 297 SFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPV 356

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YM++WSAWLD+QKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 357 YMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 402

Query: 361 IL 363
           +L
Sbjct: 417 LL 402

[Close]

BLAST of CmUC07G128160 vs. NCBI nr
Match: XP_008447350.1 (PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA0037902.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa] >TYJ98034.1 protein LOW PSII ACCUMULATION 1 [Cucumis melo var. makuwa])

HSP 1 Score: 557.0 bits (1434), Expect = 1.3e-154
Identity = 293/362 (80.94%), Postives = 308/362 (85.08%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           MAVSLSTL +SS NNIA PPHFS TP+HNA DFKFCRR    VHRKTVSF+SSP LP SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
               Y RRNLAN+  SAADKPEI                                SSTA+
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEI--------------------------------SSTAK 120

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFG
Sbjct: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFG 180

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
Sbjct: 181 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SF++EAFKSSEPFTE+LLERGVLVVPLATD++TL FEFDEREEVKDIT+KRK+LWRLTPV
Sbjct: 241 SFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPV 300

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 301 YMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 330

Query: 361 IL 363
           +L
Sbjct: 361 LL 330

[Close]

BLAST of CmUC07G128160 vs. NCBI nr
Match: XP_022963501.1 (protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_022963502.1 protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata])

HSP 1 Score: 541.6 bits (1394), Expect = 5.5e-150
Identity = 283/362 (78.18%), Postives = 300/362 (82.87%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           M VS++   I SCNN  RPPH SRT +HNA + KFCRRI C VHR  VSFN  PS+ DSL
Sbjct: 45  MVVSMAI--IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSL 104

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
             L Y RRNLA+ TCSA+DKPEI                                SSTA+
Sbjct: 105 RYLQYRRRNLASVTCSASDKPEI--------------------------------SSTAK 164

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFG
Sbjct: 165 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFG 224

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Sbjct: 225 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPE 284

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPV
Sbjct: 285 SFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPV 344

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YM++WSAWLD+QKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 345 YMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 372

Query: 361 IL 363
           +L
Sbjct: 405 LL 372

[Close]

BLAST of CmUC07G128160 vs. ExPASy Swiss-Prot
Match: Q9SRY4 (Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=LPA1 PE=1 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.0e-30
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 120 RIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDF 179
           ++ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 180 GAVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 239
           G +V+   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 240 ESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDLSTLKFEF 299
           +  +  A + ++ F   LL RGVL+VP+                     AT L ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 300 DEREE--VKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRG 359
           D R +  V     K +  ++   V   EW  W+ +Q+   GV     VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 360 SGVGYPPWNALVAQLPPVKGLWSAI 362
           SG G P W  +  +LPP+  + S +
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

[Close]

BLAST of CmUC07G128160 vs. ExPASy TrEMBL
Match: A0A0A0L902 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1)

HSP 1 Score: 564.3 bits (1453), Expect = 3.8e-157
Identity = 297/362 (82.04%), Postives = 310/362 (85.64%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           MAVSL T +ISS NNIA PPHFS TP+HNASDFKF RR  C+VHRKTVSF+SSP LP SL
Sbjct: 1   MAVSLFTPSISSFNNIAPPPHFSPTPSHNASDFKFRRRSYCRVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
             L Y RRNLANF CSAADKPEI                                SSTA+
Sbjct: 61  RFLVYGRRNLANFICSAADKPEI--------------------------------SSTAK 120

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDIL+GLG+DFG
Sbjct: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILEGLGVDFG 180

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPIS LRGIARLVICAGPE
Sbjct: 181 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISILRGIARLVICAGPE 240

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SFI+EAFKSSEPFTERLLERGVLVVPLATD++TL FEFD+REEVKDITTKRKRLWRLTPV
Sbjct: 241 SFIIEAFKSSEPFTERLLERGVLVVPLATDVTTLNFEFDDREEVKDITTKRKRLWRLTPV 300

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 330

Query: 361 IL 363
           +L
Sbjct: 361 LL 330

[Close]

BLAST of CmUC07G128160 vs. ExPASy TrEMBL
Match: A0A5D3BG35 (Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold487G00670 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 6.1e-155
Identity = 293/362 (80.94%), Postives = 308/362 (85.08%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           MAVSLSTL +SS NNIA PPHFS TP+HNA DFKFCRR    VHRKTVSF+SSP LP SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
               Y RRNLAN+  SAADKPEI                                SSTA+
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEI--------------------------------SSTAK 120

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFG
Sbjct: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFG 180

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
Sbjct: 181 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SF++EAFKSSEPFTE+LLERGVLVVPLATD++TL FEFDEREEVKDIT+KRK+LWRLTPV
Sbjct: 241 SFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPV 300

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 301 YMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 330

Query: 361 IL 363
           +L
Sbjct: 361 LL 330

[Close]

BLAST of CmUC07G128160 vs. ExPASy TrEMBL
Match: A0A1S3BHU5 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489822 PE=4 SV=1)

HSP 1 Score: 557.0 bits (1434), Expect = 6.1e-155
Identity = 293/362 (80.94%), Postives = 308/362 (85.08%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           MAVSLSTL +SS NNIA PPHFS TP+HNA DFKFCRR    VHRKTVSF+SSP LP SL
Sbjct: 1   MAVSLSTLIVSSFNNIAPPPHFSPTPSHNAPDFKFCRRSCFHVHRKTVSFSSSPRLPVSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
               Y RRNLAN+  SAADKPEI                                SSTA+
Sbjct: 61  RFHVYGRRNLANYIYSAADKPEI--------------------------------SSTAK 120

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLL ALANSSRA+EVPDILKGLGIDFG
Sbjct: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLGALANSSRADEVPDILKGLGIDFG 180

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE
Sbjct: 181 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SF++EAFKSSEPFTE+LLERGVLVVPLATD++TL FEFDEREEVKDIT+KRK+LWRLTPV
Sbjct: 241 SFVIEAFKSSEPFTEQLLERGVLVVPLATDVTTLNFEFDEREEVKDITSKRKKLWRLTPV 300

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YMTEWSAWLDEQKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 301 YMTEWSAWLDEQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 330

Query: 361 IL 363
           +L
Sbjct: 361 LL 330

[Close]

BLAST of CmUC07G128160 vs. ExPASy TrEMBL
Match: A0A6J1HGA1 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111463810 PE=4 SV=1)

HSP 1 Score: 541.6 bits (1394), Expect = 2.7e-150
Identity = 283/362 (78.18%), Postives = 300/362 (82.87%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           M VS++   I SCNN  RPPH SRT +HNA + KFCRRI C VHR  VSFN  PS+ DSL
Sbjct: 45  MVVSMAI--IPSCNNFGRPPHCSRTRSHNARNLKFCRRICCHVHRNPVSFNFGPSVADSL 104

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
             L Y RRNLA+ TCSA+DKPEI                                SSTA+
Sbjct: 105 RYLQYRRRNLASVTCSASDKPEI--------------------------------SSTAK 164

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDIL GLGIDFG
Sbjct: 165 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILNGLGIDFG 224

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV LFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Sbjct: 225 AVALFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPE 284

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           SFIMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPV
Sbjct: 285 SFIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPV 344

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YM++WSAWLD+QKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 345 YMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 372

Query: 361 IL 363
           +L
Sbjct: 405 LL 372

[Close]

BLAST of CmUC07G128160 vs. ExPASy TrEMBL
Match: A0A6J1HWD0 (protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111466857 PE=4 SV=1)

HSP 1 Score: 536.6 bits (1381), Expect = 8.5e-149
Identity = 280/362 (77.35%), Postives = 298/362 (82.32%), Query Frame = 0


Query: 1   MAVSLSTLNISSCNNIARPPHFSRTPTHNASDFKFCRRISCQVHRKTVSFNSSPSLPDSL 60
           M VS++   I SCNN  RPPH SRT +HNA + KFCRRI C VHR  VSFN  PS+ DSL
Sbjct: 1   MVVSMAI--IPSCNNFGRPPHCSRTRSHNAHNLKFCRRICCHVHRNPVSFNFGPSVADSL 60

Query: 61  PSLHYARRNLANFTCSAADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTAR 120
             L Y RRNLA+ TCSA+DKPEI                                SSTA+
Sbjct: 61  RYLQYRRRNLASVTCSASDKPEI--------------------------------SSTAK 120

Query: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFG 180
           IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALAN+SRAEEVPDIL GLGIDFG
Sbjct: 121 IRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANTSRAEEVPDILNGLGIDFG 180

Query: 181 AVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGPE 240
           AV  FAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVI ISTLRGIARLVICAGPE
Sbjct: 181 AVAFFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVITISTLRGIARLVICAGPE 240

Query: 241 SFIMEAFKSSEPFTERLLERGVLVVPLATDLSTLKFEFDEREEVKDITTKRKRLWRLTPV 300
           S IMEAFK+SEPFTERLLERGVLV+P ATD S+L FEFDEREE+KDITTKRKRLWRLTPV
Sbjct: 241 SLIMEAFKTSEPFTERLLERGVLVIPFATDASSLNFEFDEREEMKDITTKRKRLWRLTPV 300

Query: 301 YMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSA 360
           YM++WSAWLD+QKKLAGV+SDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWS 
Sbjct: 301 YMSQWSAWLDDQKKLAGVSSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSG 328

Query: 361 IL 363
           +L
Sbjct: 361 LL 328

[Close]

BLAST of CmUC07G128160 vs. TAIR 10
Match: AT4G28740.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3493 (InterPro:IPR021883); BEST Arabidopsis thaliana protein match is: tetratricopeptide repeat (TPR)-containing protein (TAIR:AT1G02910.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 333.6 bits (854), Expect = 2.1e-91
Identity = 184/347 (53.03%), Postives = 234/347 (67.44%), Query Frame = 0


Query: 21  HFSRTPTHNASDFKFCRRISCQVHRKTVSF---NSSPSLPDSLPSLHYARRNLANFTCSA 80
           H S+   + A +    RRIS   HR+ + F   N   ++      L +      N  C A
Sbjct: 31  HISKQALYQAKESYSHRRISRHNHRERLDFSHRNHRLTITRKQQPLSF------NTVCFA 90

Query: 81  ADKPEISLVVFQPSVSFSITPAIQPEIWRCVTVSGFLLSSTARIRSEVLSPFRSVRMFFY 140
           AD+P                                 +S+ ARIRSEVLSPFRSVRMFFY
Sbjct: 91  ADEPS-------------------------------EISADARIRSEVLSPFRSVRMFFY 150

Query: 141 LTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDFGAVVLFAFLYFRENNAKN 200
           L FIASG+LGGLIAT++L+ ALAN +R+ EV +I+KGLG+D GA  LFAFLYF EN  KN
Sbjct: 151 LAFIASGSLGGLIATSRLIGALANPARSGEVLEIVKGLGVDIGAASLFAFLYFNENKTKN 210

Query: 201 AQLARLSREESLSNLKLRVDQ-NKVIPISTLRGIARLVICAGPESFIMEAFKSSEPFTER 260
           AQ+ARLSREE+L  LK+RV++ NKVI +  LRG+ARLVICAGP  FI EAFK S+ +T+ 
Sbjct: 211 AQMARLSREENLGKLKMRVEENNKVISVGDLRGVARLVICAGPAEFIEEAFKRSKEYTQG 270

Query: 261 LLERGVLVVPLATDLSTLKFEFDEREEV-KDITTKRKRLWRLTPVYMTEWSAWLDEQKKL 320
           L+ERGV+VV  ATD ++   EFDE +   ++++ +RK+LWR+TPV++ EW  WL+EQKKL
Sbjct: 271 LVERGVVVVAYATDGNSPVLEFDETDIADEEMSQRRKKLWRVTPVFVPEWEKWLNEQKKL 330

Query: 321 AGVTSDSPVYLSLRMDGRVRGSGVGYPPWNALVAQLPPVKGLWSAIL 363
           A V+SDSPVYLSLR+DGRVR SGVGYPPW A VAQLPPVKG+W+ +L
Sbjct: 331 ANVSSDSPVYLSLRLDGRVRASGVGYPPWQAFVAQLPPVKGMWTGLL 340

[Close]

BLAST of CmUC07G128160 vs. TAIR 10
Match: AT1G02910.1 (tetratricopeptide repeat (TPR)-containing protein )

HSP 1 Score: 134.8 bits (338), Expect = 1.4e-31
Identity = 82/265 (30.94%), Postives = 131/265 (49.43%), Query Frame = 0


Query: 120 RIRSEVLSPFRSVRMFFYLTFIASGTLGGLIATTQLLAALANSSRAEEVPDILKGLGIDF 179
           ++ SEV +PFR VR FFY  F A+  +       +L+ A+     A  + +      I+ 
Sbjct: 187 KLISEVRAPFRGVRKFFYFAFAAAAGISMFFTVPRLVQAIRGGDGAPNLLETTGNAAINI 246

Query: 180 GAVVLFAFLYFRENNAKNAQLARLSREESLSNLKLRVDQNKVIPISTLRGIARLVICAGP 239
           G +V+   L+  EN  +  Q+ +++R+E+LS L LR+  N+V+ +  LR   R VI AG 
Sbjct: 247 GGIVVMVSLFLWENKKEEEQMVQITRDETLSRLPLRLSTNRVVELVQLRDTVRPVILAGK 306

Query: 240 ESFIMEAFKSSEPFTERLLERGVLVVPL---------------------ATDLSTLKFEF 299
           +  +  A + ++ F   LL RGVL+VP+                     AT L ++  +F
Sbjct: 307 KETVTLAMQKADRFRTELLRRGVLLVPVVWGERKTPEIEKKGFGASSKAATSLPSIGEDF 366

Query: 300 DEREE--VKDITTKRKRLWRLTPVYMTEWSAWLDEQKKLAGVTSDSPVYLSLRMDGRVRG 359
           D R +  V     K +  ++   V   EW  W+ +Q+   GV     VY+ LR+DGRVR 
Sbjct: 367 DTRAQSVVAQSKLKGEIRFKAETVSPGEWERWIRDQQISEGVNPGDDVYIILRLDGRVRR 426

Query: 360 SGVGYPPWNALVAQLPPVKGLWSAI 362
           SG G P W  +  +LPP+  + S +
Sbjct: 427 SGRGMPDWAEISKELPPMDDVLSKL 451

The following BLAST results are available for this feature:

BLAST of CmUC07G128160 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038888898.1	1.8e-164	85.64	protein LOW PSII ACCUMULATION 1, chloroplastic [Benincasa hispida] >XP_038888899...	[more]
XP_004152010.1	7.9e-157	82.04	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis sativus] >KGN58323.1 hyp...	[more]
KAG7011306.1	3.9e-156	81.22	Protein LOW PSII ACCUMULATION 1, chloroplastic, partial [Cucurbita argyrosperma ...	[more]
XP_008447350.1	1.3e-154	80.94	PREDICTED: protein LOW PSII ACCUMULATION 1, chloroplastic [Cucumis melo] >KAA003...	[more]
XP_022963501.1	5.5e-150	78.18	protein LOW PSII ACCUMULATION 1, chloroplastic [Cucurbita moschata] >XP_02296350...	[more]

BLAST of CmUC07G128160 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SRY4	2.0e-30	30.94	Protein LOW PSII ACCUMULATION 1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmUC07G128160 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L902	3.8e-157	82.04	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G621430 PE=4 SV=1	[more]
A0A5D3BG35	6.1e-155	80.94	Protein LOW PSII ACCUMULATION 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3BHU5	6.1e-155	80.94	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103...	[more]
A0A6J1HGA1	2.7e-150	78.18	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1HWD0	8.5e-149	77.35	protein LOW PSII ACCUMULATION 1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LO...	[more]

BLAST of CmUC07G128160 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G28740.1	2.1e-91	53.03	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]
AT1G02910.1	1.4e-31	30.94	tetratricopeptide repeat (TPR)-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021883	Protein LOW PSII ACCUMULATION 1-like	PFAM	PF11998	DUF3493	coord: 117..193 e-value: 3.7E-27 score: 94.3
None	No IPR available	PANTHER	PTHR35498:SF1	LOW PSII ACCUMULATION-LIKE PROTEIN	coord: 35..362
None	No IPR available	PANTHER	PTHR35498	PROTEIN LOW PSII ACCUMULATION 1, CHLOROPLASTIC	coord: 35..362

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC07G128160.1	CmUC07G128160.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane