CmUC06G116090 (gene) Watermelon (USVL531) v1

Overview
NameCmUC06G116090
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr06: 10100100 .. 10100426 (+)
RNA-Seq ExpressionCmUC06G116090
SyntenyCmUC06G116090
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCACCCCACACGCCCCCCGTGCCCACCCACCATGCCCACCATGTGCGCCCATGCCCAGCAGCCCCACCTTGCCCGCCCACCTTGCCCACCCTGGCTGCCTTGGCCCGCTGCCATGCCCACCCTGGGCGCCTGCCATGCCCACCCTGGGCAGCTGCCATGGCCACCCTAGGCGCCTGCCAGCCCACCCTGGACGCCTGCCATGCCCACCCTGTGCGCCTGCCATGCCCACCATGTGTGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAG

mRNA sequence

ATGCCCACCCCACACGCCCCCCGTGCCCACCCACCATGCCCACCATGTGCGCCCATGCCCAGCAGCCCCACCTTGCCCGCCCACCTTGCCCACCCTGGCTGCCTTGGCCCGCTGCCATGCCCACCCTGGGCGCCTGCCATGCCCACCCTGGGCAGCTGCCATGGCCACCCTAGGCGCCTGCCAGCCCACCCTGGACGCCTGCCATGCCCACCCTGTGCGCCTGCCATGCCCACCATGTGTGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAG

Coding sequence (CDS)

ATGCCCACCCCACACGCCCCCCGTGCCCACCCACCATGCCCACCATGTGCGCCCATGCCCAGCAGCCCCACCTTGCCCGCCCACCTTGCCCACCCTGGCTGCCTTGGCCCGCTGCCATGCCCACCCTGGGCGCCTGCCATGCCCACCCTGGGCAGCTGCCATGGCCACCCTAGGCGCCTGCCAGCCCACCCTGGACGCCTGCCATGCCCACCCTGTGCGCCTGCCATGCCCACCATGTGTGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCCACCCTGGGCGCCTGCCATGCCTACAAGCAAGCCTACGCTCTGTATACATTAG

Protein sequence

MPTPHAPRAHPPCPPCAPMPSSPTLPAHLAHPGCLGPLPCPPWAPAMPTLGSCHGHPRRLPAHPGRLPCPPCAPAMPTMCACHAHPGRLPCPPWAPAMPTSKPTLCIH
Homology
BLAST of CmUC06G116090 vs. NCBI nr
Match: XP_005774955.1 (hypothetical protein EMIHUDRAFT_56989, partial [Emiliania huxleyi CCMP1516] >EOD22526.1 hypothetical protein EMIHUDRAFT_56989, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 55.5 bits (132), Expect = 3.4e-04
Identity = 43/89 (48.31%), Postives = 44/89 (49.44%), Query Frame = 0

Query: 14  PPCAPMPSSPTLPAHLAHPGCLGP---LPCPPWAPAMPTLGSCHGHPRRLPAHPGRLPCP 73
           PP  P PSS T    L H  C  P   LPCP    AMP L  CH       A P RLPCP
Sbjct: 2   PPRLPCPSS-TTAMPLLH-DCHAPPPRLPCPSSTTAMPLLHDCH-------APPPRLPCP 61

Query: 74  PCAPAMPTMCACHAHPGRLPCPPWAPAMP 100
               AMP +  CHA P RLPCP    AMP
Sbjct: 62  SSTTAMPLLHDCHAPPPRLPCPSSTTAMP 81

BLAST of CmUC06G116090 vs. NCBI nr
Match: XP_041710063.1 (vegetative cell wall protein gp1-like [Coregonus clupeaformis])

HSP 1 Score: 53.9 bits (128), Expect = 9.9e-04
Identity = 49/122 (40.16%), Postives = 51/122 (41.80%), Query Frame = 0

Query: 2   PTPHAPRAHPPCPP----CAPMP---------SSP-TLPAHLAHPGCLGP---LPCPPWA 61
           P  HAP A   CPP    C P P         S P +LP     P C  P   L CPP  
Sbjct: 136 PACHAPSACLSCPPACLSCPPQPACHAPSACLSCPLSLPVMPPQPACHAPSACLSCPPSL 195

Query: 62  PAMPTLGSCHGHPRRLPAHPGRLPCPPCAPAMPTMCACHAHPGRLPCPPWAPAMPTSKPT 107
           P MP   +CH       A P  L CPP  P MP   ACHA P  L CP   P MP S   
Sbjct: 196 PVMPPQPACH-------APPACLSCPPSLPVMPPQPACHAPPACLSCPLSLPVMPPSACL 250

BLAST of CmUC06G116090 vs. ExPASy TrEMBL
Match: R1EHU6 (Uncharacterized protein (Fragment) OS=Emiliania huxleyi OX=2903 GN=EMIHUDRAFT_56989 PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.6e-04
Identity = 43/89 (48.31%), Postives = 44/89 (49.44%), Query Frame = 0

Query: 14  PPCAPMPSSPTLPAHLAHPGCLGP---LPCPPWAPAMPTLGSCHGHPRRLPAHPGRLPCP 73
           PP  P PSS T    L H  C  P   LPCP    AMP L  CH       A P RLPCP
Sbjct: 2   PPRLPCPSS-TTAMPLLH-DCHAPPPRLPCPSSTTAMPLLHDCH-------APPPRLPCP 61

Query: 74  PCAPAMPTMCACHAHPGRLPCPPWAPAMP 100
               AMP +  CHA P RLPCP    AMP
Sbjct: 62  SSTTAMPLLHDCHAPPPRLPCPSSTTAMP 81

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_005774955.13.4e-0448.31hypothetical protein EMIHUDRAFT_56989, partial [Emiliania huxleyi CCMP1516] >EOD... [more]
XP_041710063.19.9e-0440.16vegetative cell wall protein gp1-like [Coregonus clupeaformis][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
R1EHU61.6e-0448.31Uncharacterized protein (Fragment) OS=Emiliania huxleyi OX=2903 GN=EMIHUDRAFT_56... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC06G116090.1CmUC06G116090.1mRNA