CmUC06G115870 (gene) Watermelon (USVL531) v1

Overview


Name	CmUC06G115870
Type	gene
Organism	Citrullus mucosospermus (Watermelon (USVL531) v1)
Description	DEAD-box ATP-dependent RNA helicase 51-like
Location	CmU531Chr06: 9581223 .. 9583324 (-)
RNA-Seq Expression	CmUC06G115870
Synteny	CmUC06G115870

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAATTCCATTACATTTCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGGTAAGATTTCTTATTGGAAACTTTTAGTTTGCTGGACATAGATTTTCTATGCACAATCTACTATTACCGATAACTATTTAACTTGCACTTGAAGTATTATATTCTGATGTCGTGAATGGGGAATAGTGGAAAAAAAGTGACTAATGGTATTCTATGCTTTGATTAACCTTGATGTTAACTATTAATAGTTTGTTTTTAGTGGTTAAGCTGAACACTCAAATATGGGTTGGAGTTCTTTTAATGAATCTTGCGCTGGTTTTGTTTTCTTAAGTACAACAGCAAATGTGTATGTGGATTTCAACCTAACTAATACATGGACTTGGATATTCTTAAATTTTTCCTGACATTATGAGTGCAGATTCAAGCCAGAGCAATTCCGCATTCGGGAAAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGTGTGGAGCTACTACATCACATTCACATCTCCTTTACTCCTCGTAATGGAACTGGTGTTATTGTTATTTGCCCAACAAGCTTGCAATGCAGGCTGGTCCAATTTCCCCCCTTACCCGCATTTCTCTTTCAACAATGACCCCTCATATTGATGTTGAAAGAGCTCACAATTTTTTTTTTCTTTTCTTTTTTCTTTCAAAAAATGATTTAGTTTGAACTTTGTATTAATAAAAAAGGAATTGTAAATACAAAGATACATTAAGGTTGACTGCATGGATACATTAAGGTTACAATTCACACTCAATGAAAGATACATTATCAATTCTAAAAGATTCATTCTTCTATATTCCTTCTTGAAGAGAAATTTATCTAAGAAAGTAATGGTCTTCTTCTCGCTTGTAACTCTGTAAAATTCCATGCGGACCTTCTTAGATACACTAAGGTTGACTGCATGGATATCCATGGAAAGCAAAAGCAGCAGAAGAGAACTTCTACCTTCTTTTCCTTCTTAGATACATTAAGGTCTAAGCTGTTGTAAGTTATATTCTTTGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGCTTTGATTTATTTTGTGTGTGTGAGTACACTTCTTGTAGTGTTTGTTTGGGTATGTGGGGCTCCTTTTTGCATTTGAGTTCTTTGTGAGGGTGGAAGTGTCCACTAATACTCCGTCTGGATTCATTAAAAGAGATCAATTCATTTCTGTTAGCATAAACCTTGGAAGGATAAGGAAGCAAAGAACTTCGAAATTTTCAATGACTACAGATCAGAACTGATAGCATTTGTATTTACTTCATAGTTGGCATCTCGCATCAACTTTCATTGTGGACTGGCCTTTTGAAAAATGCTTATTAAAATTACGGAGTTAAAGGATACTAATGGTTTTACATTTCTTAAAGCCATTTAGCTTACTATGTAACATCTCATTGATTGATTCTCTATGCACATTTCAAACGTCTCAGGATTGGATTGTGCAGTAGGATCCTCCAGATGAACCCAAGGTGCCTCTTACTCCTTAATTATGTTCACGTCTCATTTAGTATCCTTGTAATTCCTATATTATATTAAATAGGTAATTCTTATACTAATTGAGTTTAATGTTGTGTGAAATTATTGATTTCAGGAATATATTCACAGGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTCGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGTATTCTCCCAAAAAATTAGATTGAATTGTATGCTGGGGTCAAATCATCTTCTTCACAGAGGTTGAGTATTCGAGGAAGAGCAACGAAGCTCAGAATTGAATACAGTTGTGCTAATTTCACGTTGCAGGAGAAACTGGTTGGCAATGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGA

mRNA sequence

ATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAATTCCATTACATTTCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCATTCGGGAAAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGTGTGGAGCTACTACATCACATTCACATCTCCTTTACTCCTCGTAATGGAACTGGTGTTATTGTTATTTGCCCAACAAGCTTGCAATGCAGGCTGGATTGGATTGTGCAGTAGGATCCTCCAGATGAACCCAAGGTGCCTCTTACTCCTTAATTATGTTCACGTCTCATTTAGTATCCTTGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTCGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGAGAAACTGGTTGGCAATGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGA

Coding sequence (CDS)

ATGAATGAGGAGGATGGCGTGGAAGGGAAAGGTGAGAAGGATGAGGTGAAAGAGAACGAGGAAAAGAAGGTTAAGATTGGTGGATCAGGAATTATGAATTCCATTACATTTCATTCGCTTGACTTGTCGGAGAAAACTCTCCGGGCGATTAAAGACATGGGATTTGAGCATATGACTCAGATTCAAGCCAGAGCAATTCCGCATTCGGGAAAGATATTCTTGGAGCTGCAAGGACTGGATCTGGGAAAACTCTTGCCTTTCTTGTACCAGGTGTGGAGCTACTACATCACATTCACATCTCCTTTACTCCTCGTAATGGAACTGGTGTTATTGTTATTTGCCCAACAAGCTTGCAATGCAGGCTGGATTGGATTGTGCAGTAGGATCCTCCAGATGAACCCAAGGTGCCTCTTACTCCTTAATTATGTTCACGTCTCATTTAGTATCCTTGGGAGGGGATGGGAAGGTAGCAAAGGAAATGCCCTGCTTTTCTCGATTCCTGAAGGGCTTCAATTTCTTGGCTATCTAAAGGTCTGGAGAAACTGGTTGGCAATGAAGAAGTCGGCTAAGGATGGTTACAGATCCTACATATTAGCTTACAATTCACAGATATTTTCTTGA

Protein sequence

MNEEDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIPHSGKIFLELQGLDLGKLLPFLYQVWSYYITFTSPLLLVMELVLLLFAQQACNAGWIGLCSRILQMNPRCLLLLNYVHVSFSILGRGWEGSKGNALLFSIPEGLQFLGYLKVWRNWLAMKKSAKDGYRSYILAYNSQIFS

Homology

[Close]

BLAST of CmUC06G115870 vs. NCBI nr
Match: XP_038895340.1 (DEAD-box ATP-dependent RNA helicase 51-like [Benincasa hispida])

HSP 1 Score: 109.0 bits (271), Expect = 4.9e-20
Identity = 62/87 (71.26%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDG+EGK E DE KENEEKKVK GGSGIM +++F SLDLSEKTLRAIKDMGFEHMTQIQA
Sbjct: 98  EDGMEGKVENDEEKENEEKKVKTGGSGIMTTVSFDSLDLSEKTLRAIKDMGFEHMTQIQA 157

Query: 64  RAIPHS--GKIFLELQGLDLGKLLPFL 89
           +AIP S  GK  L       GK L FL
Sbjct: 158 KAIPPSLVGKDILGAARTGSGKTLAFL 184

[Close]

BLAST of CmUC06G115870 vs. NCBI nr
Match: XP_023520092.1 (DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 103.6 bits (257), Expect = 2.1e-18
Identity = 62/100 (62.00%), Postives = 73/100 (73.00%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGV+GK EKDE K NE+KKVK GGSGIM+++ F SL+LSEKTLRAIKDMGF+HMTQIQA
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVAFDSLELSEKTLRAIKDMGFQHMTQIQA 155

Query: 64  RAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT 100
           RAIP   +GK  L       GK L FL       ++I+FT
Sbjct: 156 RAIPPFLTGKDVLGAARTGSGKTLAFLIPAVELLHHISFT 195

[Close]

BLAST of CmUC06G115870 vs. NCBI nr
Match: KAG6584379.1 (DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-18
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQA
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQIQA 155

Query: 64  RAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT 100
           RAIP   +GK  L       GK L FL       ++I+FT
Sbjct: 156 RAIPPFLTGKDVLGAARTGSGKTLAFLIPAVELLHHISFT 195

[Close]

BLAST of CmUC06G115870 vs. NCBI nr
Match: XP_022924139.1 (DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita moschata])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-18
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQA
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQIQA 155

Query: 64  RAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT 100
           RAIP   +GK  L       GK L FL       ++I+FT
Sbjct: 156 RAIPPFLTGKDVLGAARTGSGKTLAFLIPAVELLHHISFT 195

[Close]

BLAST of CmUC06G115870 vs. NCBI nr
Match: KAG7019966.1 (DEAD-box ATP-dependent RNA helicase 27 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 102.4 bits (254), Expect = 4.6e-18
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQA
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQIQA 155

Query: 64  RAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT 100
           RAIP   +GK  L       GK L FL       ++I+FT
Sbjct: 156 RAIPPFLTGKDVLGAARTGSGKTLAFLIPAVELLHHISFT 195

[Close]

BLAST of CmUC06G115870 vs. ExPASy Swiss-Prot
Match: Q9LIH9 (DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana OX=3702 GN=RH51 PE=2 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 4.1e-09
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 7   VEGKGEKDEVKEN--EEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQAR 66
           +E + EK E  E+  +EK + I G GIM ++TF SLDLSE+T  AIK+MGF++MTQIQA 
Sbjct: 59  IEEEEEKVEAMEDGEDEKNIVIVGKGIMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAG 118

Query: 67  AIPH--SGKIFLELQGLDLGKLLPFL 89
           +I     GK  L       GK L FL
Sbjct: 119 SIQPLLEGKDVLGAARTGSGKTLAFL 144

[Close]

BLAST of CmUC06G115870 vs. ExPASy Swiss-Prot
Match: Q84T03 (DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0802700 PE=3 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.6e-08
Identity = 40/90 (44.44%), Postives = 56/90 (62.22%), Query Frame = 0


Query: 3   EEDGVEGKGEKDEVKENEEKKVK--IGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQ 62
           EE+  E K +K+  KE + KK K   GGSGI+ ++ F  L +SE T RAI++M + ++TQ
Sbjct: 62  EEEKKEKKQKKEMSKEKKRKKEKGNEGGSGILTNMLFSELGVSEPTARAIREMNYTYLTQ 121

Query: 63  IQARAIPH--SGKIFLELQGLDLGKLLPFL 89
           IQAR+IPH  +GK  +       GK L FL
Sbjct: 122 IQARSIPHLLNGKDVMGAAKTGSGKTLAFL 151

[Close]

BLAST of CmUC06G115870 vs. ExPASy Swiss-Prot
Match: Q9SB89 (DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana OX=3702 GN=RH27 PE=2 SV=2)

HSP 1 Score: 60.8 bits (146), Expect = 2.0e-08
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 8   EGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIP 67
           E K E++EV++ EE+K K+  + IM + TF SL LS+ T ++IK+MGF  MTQIQA+AIP
Sbjct: 128 EAKSEEEEVEDKEEEK-KLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIP 187

Query: 68  --HSGKIFLELQGLDLGKLLPFL 89
               G+  L       GK L FL
Sbjct: 188 PLMMGEDVLGAARTGSGKTLAFL 209

[Close]

BLAST of CmUC06G115870 vs. ExPASy Swiss-Prot
Match: Q0UR48 (ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) OX=321614 GN=HAS1 PE=3 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.1e-05
Identity = 29/54 (53.70%), Postives = 34/54 (62.96%), Query Frame = 0


Query: 37  FHSLDLSEKTLRAIKDMGFEHMTQIQARAIPH--SGKIFLELQGLDLGKLLPFL 89
           F  L+LSE+T+ AIK MGFE MT+IQ +AIP   SGK  L       GK L FL
Sbjct: 133 FDELNLSERTMEAIKTMGFESMTEIQRKAIPPLLSGKDVLGAAKTGSGKTLAFL 186

[Close]

BLAST of CmUC06G115870 vs. ExPASy Swiss-Prot
Match: Q1EA54 (ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis (strain RS) OX=246410 GN=HAS1 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 28/54 (51.85%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 37  FHSLDLSEKTLRAIKDMGFEHMTQIQARAIP--HSGKIFLELQGLDLGKLLPFL 89
           F  L+LSEKTL+AI++MGFE MT+IQ R IP   +G+  L       GK L FL
Sbjct: 126 FTELNLSEKTLKAIQEMGFETMTEIQRRGIPPLMAGRDVLGAAKTGSGKTLSFL 179

[Close]

BLAST of CmUC06G115870 vs. ExPASy TrEMBL
Match: A0A6J1E8A7 (DEAD-box ATP-dependent RNA helicase 51-like OS=Cucurbita moschata OX=3662 GN=LOC111431667 PE=3 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 2.2e-18
Identity = 61/100 (61.00%), Postives = 74/100 (74.00%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGV+GK EKDE K NE+KKVK GGSGIM++++F SL+LSEKTLRAIKD+GF+HMTQIQA
Sbjct: 96  EDGVDGKVEKDEEKVNEKKKVKTGGSGIMSTVSFDSLELSEKTLRAIKDIGFQHMTQIQA 155

Query: 64  RAIPH--SGKIFLELQGLDLGKLLPFLYQVWS--YYITFT 100
           RAIP   +GK  L       GK L FL       ++I+FT
Sbjct: 156 RAIPPFLTGKDVLGAARTGSGKTLAFLIPAVELLHHISFT 195

[Close]

BLAST of CmUC06G115870 vs. ExPASy TrEMBL
Match: A0A5D3BGT0 (DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001750 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGVE +GE+DE  E+++ KVK GGSGIM+S++F SL+LSEKTLRAIKDMGFEHMTQIQA
Sbjct: 98  EDGVEAEGEEDEEDEDKKNKVKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQIQA 157

Query: 64  RAIPHS--GKIFLELQGLDLGKLLPFL 89
           RAIP S  GK  L       GK L FL
Sbjct: 158 RAIPPSLIGKDILGAARTGSGKTLAFL 184

[Close]

BLAST of CmUC06G115870 vs. ExPASy TrEMBL
Match: A0A1S3C1Z8 (DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo OX=3656 GN=LOC103495709 PE=3 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-18
Identity = 58/87 (66.67%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGVE +GE+DE  E+++ KVK GGSGIM+S++F SL+LSEKTLRAIKDMGFEHMTQIQA
Sbjct: 98  EDGVEAEGEEDEEDEDKKNKVKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQIQA 157

Query: 64  RAIPHS--GKIFLELQGLDLGKLLPFL 89
           RAIP S  GK  L       GK L FL
Sbjct: 158 RAIPPSLIGKDILGAARTGSGKTLAFL 184

[Close]

BLAST of CmUC06G115870 vs. ExPASy TrEMBL
Match: A0A0A0LQQ5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042100 PE=3 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.5e-17
Identity = 59/87 (67.82%), Postives = 66/87 (75.86%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           EDGVEG+GE+DE K+N   K K GGSGIM+S++F SL+LSEKTLRAIKDMGFEHMTQIQA
Sbjct: 98  EDGVEGEGEEDENKKN---KAKTGGSGIMSSVSFDSLELSEKTLRAIKDMGFEHMTQIQA 157

Query: 64  RAIPHS--GKIFLELQGLDLGKLLPFL 89
           RAIP S  GK  L       GK L FL
Sbjct: 158 RAIPPSLIGKDILGAARTGSGKTLAFL 181

[Close]

BLAST of CmUC06G115870 vs. ExPASy TrEMBL
Match: A0A6J1KJK9 (DEAD-box ATP-dependent RNA helicase 27-like OS=Cucurbita maxima OX=3661 GN=LOC111495819 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 2.5e-17
Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 4   EDGVEGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQA 63
           +DGVEG+ EKD+ K+NE+KKVK  GSGIM++++F SL+LSEKTLRAIKDMGFEHMTQIQA
Sbjct: 94  KDGVEGEVEKDKEKKNEKKKVKTDGSGIMSTVSFDSLELSEKTLRAIKDMGFEHMTQIQA 153

Query: 64  RAIPH--SGKIFLELQGLDLGKLLPFL 89
           RAIP    GK  L       GK L FL
Sbjct: 154 RAIPPFLVGKDVLGAARTGSGKTLAFL 180

[Close]

BLAST of CmUC06G115870 vs. TAIR 10
Match: AT3G18600.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 63.2 bits (152), Expect = 2.9e-10
Identity = 42/86 (48.84%), Postives = 54/86 (62.79%), Query Frame = 0


Query: 7   VEGKGEKDEVKEN--EEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQAR 66
           +E + EK E  E+  +EK + I G GIM ++TF SLDLSE+T  AIK+MGF++MTQIQA 
Sbjct: 59  IEEEEEKVEAMEDGEDEKNIVIVGKGIMTNVTFDSLDLSEQTSIAIKEMGFQYMTQIQAG 118

Query: 67  AIPH--SGKIFLELQGLDLGKLLPFL 89
           +I     GK  L       GK L FL
Sbjct: 119 SIQPLLEGKDVLGAARTGSGKTLAFL 144

[Close]

BLAST of CmUC06G115870 vs. TAIR 10
Match: AT5G65900.1 (DEA(D/H)-box RNA helicase family protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 39/83 (46.99%), Postives = 53/83 (63.86%), Query Frame = 0


Query: 8   EGKGEKDEVKENEEKKVKIGGSGIMNSITFHSLDLSEKTLRAIKDMGFEHMTQIQARAIP 67
           E K E++EV++ EE+K K+  + IM + TF SL LS+ T ++IK+MGF  MTQIQA+AIP
Sbjct: 128 EAKSEEEEVEDKEEEK-KLEETSIMTNKTFESLSLSDNTYKSIKEMGFARMTQIQAKAIP 187

Query: 68  --HSGKIFLELQGLDLGKLLPFL 89
               G+  L       GK L FL
Sbjct: 188 PLMMGEDVLGAARTGSGKTLAFL 209

The following BLAST results are available for this feature:

BLAST of CmUC06G115870 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038895340.1	4.9e-20	71.26	DEAD-box ATP-dependent RNA helicase 51-like [Benincasa hispida]	[more]
XP_023520092.1	2.1e-18	62.00	DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita pepo subsp. pepo]	[more]
KAG6584379.1	4.6e-18	61.00	DEAD-box ATP-dependent RNA helicase 27, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_022924139.1	4.6e-18	61.00	DEAD-box ATP-dependent RNA helicase 51-like [Cucurbita moschata]	[more]
KAG7019966.1	4.6e-18	61.00	DEAD-box ATP-dependent RNA helicase 27 [Cucurbita argyrosperma subsp. argyrosper...	[more]

BLAST of CmUC06G115870 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LIH9	4.1e-09	48.84	DEAD-box ATP-dependent RNA helicase 51 OS=Arabidopsis thaliana OX=3702 GN=RH51 P...	[more]
Q84T03	1.6e-08	44.44	DEAD-box ATP-dependent RNA helicase 27 OS=Oryza sativa subsp. japonica OX=39947 ...	[more]
Q9SB89	2.0e-08	46.99	DEAD-box ATP-dependent RNA helicase 27 OS=Arabidopsis thaliana OX=3702 GN=RH27 P...	[more]
Q0UR48	6.1e-05	53.70	ATP-dependent RNA helicase HAS1 OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA...	[more]
Q1EA54	1.4e-04	51.85	ATP-dependent RNA helicase HAS1 OS=Coccidioides immitis (strain RS) OX=246410 GN...	[more]

BLAST of CmUC06G115870 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E8A7	2.2e-18	61.00	DEAD-box ATP-dependent RNA helicase 51-like OS=Cucurbita moschata OX=3662 GN=LOC...	[more]
A0A5D3BGT0	2.9e-18	66.67	DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3C1Z8	2.9e-18	66.67	DEAD-box ATP-dependent RNA helicase 51 OS=Cucumis melo OX=3656 GN=LOC103495709 P...	[more]
A0A0A0LQQ5	1.5e-17	67.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042100 PE=3 SV=1	[more]
A0A6J1KJK9	2.5e-17	65.52	DEAD-box ATP-dependent RNA helicase 27-like OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of CmUC06G115870 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18600.1	2.9e-10	48.84	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT5G65900.1	1.4e-09	46.99	DEA(D/H)-box RNA helicase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (USVL531) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 2..82 e-value: 4.2E-8 score: 34.6
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 30..68
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR24031	RNA HELICASE	coord: 10..88
None	No IPR available	PANTHER	PTHR24031:SF630	DEAD-BOX ATP-DEPENDENT RNA HELICASE 51	coord: 10..88
IPR014014	RNA helicase, DEAD-box type, Q motif	PROSITE	PS51195	Q_MOTIF	coord: 35..63 score: 11.016736

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmUC06G115870.1	CmUC06G115870.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000463	maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding
molecular_function	GO:0003724	RNA helicase activity