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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. ATGCAAAGACCAAAGATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTACGGACTTCCCCCCTCTTTTTTTTCCCTTTCTTTTTATTATATATATATATATATATATATATATATATATATTTTTTTTTTTTGTTTCTCTTTCTTGTGTGTCCCCAGGTCTGGCTGCGTGTCCGCTTCACTGTTGA mRNA sequence ATGCAAAGACCAAAGATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTCTGGCTGCGTGTCCGCTTCACTGTTGA Coding sequence (CDS) ATGCAAAGACCAAAGATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTCTGGCTGCGTGTCCGCTTCACTGTTGA Protein sequence MQRPKMENIALSKGNMKPLLGRAMDVFGNTINGSQPSYVAQPSRADSDGSVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDLCLAACPLHC
Homology
BLAST of CmUC02G042540 vs. NCBI nr
Match: KAG6586336.1 (hypothetical protein SDJN03_19069, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17 Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0 Query: 6 MENIALSKGNMKPLLGRAMDVFGNTINGSQ---PSYVAQPSRA----DSDGSVSVADKEY 65 MENIALS+GNM L R +D + P++ ++PSR + SVADKEY Sbjct: 1 MENIALSEGNM---LSRTIDELALPTKSTATFLPTWQSRPSRVELRREYSQRPSVADKEY 60
Query: 66 MYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDLCLA 95 M PRGITR+VGTT KRTCQPPTSHPVDRRLRDLC A Sbjct: 61 MDPRGITRSVGTTKKRTCQPPTSHPVDRRLRDLCTA 93
BLAST of CmUC02G042540 vs. NCBI nr
Match: KGN60767.1 (hypothetical protein Csa_019309 [Cucumis sativus]) HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12 Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 Query: 50 SVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDL 92 SVSVADKEYM PRGITRTVGTT KRTCQPPTSHPVDRRLRDL Sbjct: 18 SVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59
BLAST of CmUC02G042540 vs. ExPASy TrEMBL
Match: A0A0A0LJ66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009540 PE=4 SV=1) HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13 Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 Query: 50 SVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDL 92 SVSVADKEYM PRGITRTVGTT KRTCQPPTSHPVDRRLRDL Sbjct: 18 SVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6586336.1 | 5.5e-17 | 58.33 | hypothetical protein SDJN03_19069, partial [Cucurbita argyrosperma subsp. sorori... | [more] |
KGN60767.1 | 1.4e-12 | 95.24 | hypothetical protein Csa_019309 [Cucumis sativus] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A0A0LJ66 | 6.8e-13 | 95.24 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009540 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
Relationships
The following mRNA feature(s) are a part of this gene:
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