CmUC02G042540 (gene) Watermelon (USVL531) v1

Overview
NameCmUC02G042540
Typegene
OrganismCitrullus mucosospermus (Watermelon (USVL531) v1)
DescriptionUnknown protein
LocationCmU531Chr02: 30507522 .. 30507935 (-)
RNA-Seq ExpressionCmUC02G042540
SyntenyCmUC02G042540
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAAGACCAAAGATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTACGGACTTCCCCCCTCTTTTTTTTCCCTTTCTTTTTATTATATATATATATATATATATATATATATATATATTTTTTTTTTTTGTTTCTCTTTCTTGTGTGTCCCCAGGTCTGGCTGCGTGTCCGCTTCACTGTTGA

mRNA sequence

ATGCAAAGACCAAAGATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTCTGGCTGCGTGTCCGCTTCACTGTTGA

Coding sequence (CDS)

ATGCAAAGACCAAAGATGGAAAACATCGCCTTGTCGAAAGGAAACATGAAGCCACTGTTGGGCCGTGCGATGGATGTGTTTGGCAACACAATCAACGGCTCTCAGCCGTCCTACGTGGCACAGCCGAGCCGAGCCGATTCGGATGGGAGCGTCTCGGTTGCCGACAAGGAGTACATGTATCCACGTGGGATCACGAGGACTGTGGGGACCACTTCGAAGCGCACGTGTCAACCACCGACGTCCCATCCAGTTGACCGTAGATTGCGGGATCTTTGTCTGGCTGCGTGTCCGCTTCACTGTTGA

Protein sequence

MQRPKMENIALSKGNMKPLLGRAMDVFGNTINGSQPSYVAQPSRADSDGSVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDLCLAACPLHC
Homology
[Close]
BLAST of CmUC02G042540 vs. NCBI nr
Match: KAG6586336.1 (hypothetical protein SDJN03_19069, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 97.8 bits (242), Expect = 5.5e-17
Identity = 56/96 (58.33%), Postives = 65/96 (67.71%), Query Frame = 0 

Query: 6  MENIALSKGNMKPLLGRAMDVFGNTINGSQ---PSYVAQPSRA----DSDGSVSVADKEY 65
          MENIALS+GNM   L R +D        +    P++ ++PSR     +     SVADKEY
Sbjct: 1  MENIALSEGNM---LSRTIDELALPTKSTATFLPTWQSRPSRVELRREYSQRPSVADKEY 60

Query: 66 MYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDLCLA 95
          M PRGITR+VGTT KRTCQPPTSHPVDRRLRDLC A
Sbjct: 61 MDPRGITRSVGTTKKRTCQPPTSHPVDRRLRDLCTA 93

[Close]
BLAST of CmUC02G042540 vs. NCBI nr
Match: KGN60767.1 (hypothetical protein Csa_019309 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 1.4e-12
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 50 SVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDL 92
          SVSVADKEYM PRGITRTVGTT KRTCQPPTSHPVDRRLRDL
Sbjct: 18 SVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59

[Close]
BLAST of CmUC02G042540 vs. ExPASy TrEMBL
Match: A0A0A0LJ66 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009540 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 6.8e-13
Identity = 40/42 (95.24%), Postives = 40/42 (95.24%), Query Frame = 0 

Query: 50 SVSVADKEYMYPRGITRTVGTTSKRTCQPPTSHPVDRRLRDL 92
          SVSVADKEYM PRGITRTVGTT KRTCQPPTSHPVDRRLRDL
Sbjct: 18 SVSVADKEYMDPRGITRTVGTTWKRTCQPPTSHPVDRRLRDL 59

The following BLAST results are available for this feature:
BLAST of CmUC02G042540 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6586336.15.5e-1758.33hypothetical protein SDJN03_19069, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN60767.11.4e-1295.24hypothetical protein Csa_019309 [Cucumis sativus][more]
BLAST of CmUC02G042540 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of CmUC02G042540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LJ666.8e-1395.24Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G009540 PE=4 SV=1[more]
BLAST of CmUC02G042540 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmUC02G042540.1CmUC02G042540.1mRNA