Clc11G19730 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G19730
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSmall nuclear ribonucleoprotein Sm D1
LocationClcChr11: 30227057 .. 30234074 (-)
RNA-Seq ExpressionClc11G19730
SyntenyClc11G19730
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TGTTCTTTAAAGCAAAACCCATCGGGACAAAACCGCGGCAATCTCCCAATTTCCTCTCCCTCGCTTCGTTGTTTGAAACCCTACATTCTTCATTTCCTCTGCAATCATGAAGCTTGTTAGGTATGTTGTTCTCTTTTCTATCTTTGCCCTCCTTTTTTCTCGATCTACTTGTTGTTTGCTGCATCGAATGGCTGTTTTTAATTTTAGAAACTTGGTTTTGATACAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCACGGCACTATCACAGGTCTCTCTAACTCTCTTTCTTAAATCTTGTTAAACCCTAGATTTACCAACTTTGCGGCCGTGGTTTTTCTCCCAACTTCCAACTTCCAACTTCCAACTTCCAACTTCCATTCCATTTTCTTCTTTGAACTTCACTGTATTAGAAGTTGTAGAATATTTCAGTATGTCCGCCAGTGTACAACTCTCACTATTCTTTACTTTCGTCTCATGACCATCTGTGAACGTTTGAAAGCTAACTGAAGGGTTCTGGCAAGCGTGCACTTGGAGAACCACCTTCCCACTCCCATTTTTAAGTTTAAAAATTAGTATTATCATCAATTCTTTTAAAAGTAAATTAGTATTGAACTCATGGGTTGCTTACGTGAAATTAAATCCTTGTCTTTTGGGTGTTGGGAGGATGAGACATTTTCTCTGTATATTTTTTATTGTATTAATTTAAATTATCATAACAATTTGAACTATTGATTGCTGTCTACTGATGCTGAATATCAATTCTATTTCATGACATATCAGTAGATTTAAACAAATGCTTAGAATGTCCTCTCACATTTTGATTTAATGTCTTCTACAATGCCTTCTTTCCCCCTTGTTCTGTAGGGAATGTTTCTTAAACCAAGTGAATATACTTAAACTTTAACTTGTACTGTTTTTTATCTGCACTAGAATGATATTAGCTTAGTCTGATTAAACATTAACTTCTGCTGAACCCCAGCATTTTTGGGATAAGGACTACCCAATAAATGAAAGAGAGGCAACTTATAACTTGAACTGTGCCCACTGCCCAGTGGTGGAAACATCAATTGAACGCAAATAACCTTTATTCGTCATTAGCCTTCATCCTCGTACACTACCTCTATCACCATCACCTATAACTTGAACTGTTTTTCATCTGCCCTAGAATGGCATTAACTTAGTCTGATTAAACAAAAATTCTGCCTAACTCCATTGTTTTTTGGTTCTGTAGCCCATATTCCATTCTTTTGTGAATTGCGACTATTTTCTTTTCTTGTGAAAGAGTATGGTACAACTAAAAGAGAAGCTAAAAGACTAATCTAGGGTAGCCTAGGGAATGGTAGAGAAAACCCTGCCCATGGAGCTATAGAAGATGTGCCTTCCAATAAGAGTTAAATCATATTCATAAGAGGACTCTAATTACAATAGAATATCTTGTATTTGAAAAACTATTGTAAAAATGTGTGTGGTACACTGTTACAAATAGAATCTAAAATAGATATTTTTTTCCCTTAAAAAAATTGTAGAAGCACAATTCCGAAAGATTTTATCTTCACATATAAGCCACCAGGCTGTCGACTGCTTCCAAAAATGACCGTCAACCAAGCTAGATAGGCAAAAGATAAACCATTTTTGTTGAAAATGAAAGACCATCCTCTACAGAAAAAAGGACAGTGGAGGTAAAGGTAATTTTGGGATTCCCCGTTGGAATAACAGAGGAACAAACCAGGGGAGAGAACCCAGTTTGGGAACCTTTTTTGAGCTTGTCTTGGGATGTTGAGGTCTTCCTAGGCGTGTCAAACTTCCAAACTGATTTAACCGAAGGCGTTTTGAGCTTTAGCAAGGTCTCAGAGAGTTTAGTAAGGTGATTTTAGAGAAGAGACAATTGAATGAATCAATGGTTTCTACCTCTATGTCTTCGACAGCTTCTAATTGAACTGTAACATTCTTTCCTATGAAGGCAATCCAACTGACAATTTCTCTATGAAAGGAGCAAACAAGCACTCCACAATTATCCCCCAAAATTACCTAAGGATATGGTTTTGGTTTCATTGTCTATTTTTCTGGTTTGACCCCATAGATGCCAACCATCACTTTTCATAACTATTTAAGATGTAGGGCATTATTTCTCTACTTCTGTAAATATCCAATGGAAGGGAAGTCCAATTCCATTTTAATGGGTGCCTTAGGATTTGGTGAATTATGATTATATTGCATTTTGTTGTAGACAACAACCCTCTATACCTCTTTTGTTGGAGGACTTTAGTTTAGATTATAAGCCATGTTTTAATAGGCTAAAGGCAGTCCTCTGGAAGAGACGAGGTGTAGCCTCATGGTGTTATGAAGCATTAAGTCTCAAATTTGATTAATCTTTTTTTACCAAGTATTGCTAAACAAAACTTAATAATCATGTTAAAGTTAAAAGAAAAAAAGAAAAATCACTCTTCCCAATTTCCACCTGGACAAAAATTCTAAAATGATATCTTTTACCTCACTACTATTATCCGATTGACTTATCCTAGAAATTTTAGACTGTGACAAAATAATATTATTCGACAAATTATTACAAAGAGGTGTAAGCCTCAATACCTTTTGAAAACATTGGCTATAAATAAGTGTCTCTATATATGCAATATGCTTGATGACCTATATTGCACTTATGCCTTGTGAAATCTTGATTTTGACTGAAGCATCTAAGTTACTTTACCTGTTTCATCTGTGTTCGACAAATTATTTCTAAGACATTCTCTAGCGCTACTTAGATGAATATCATTGAGCAACACTACATCATTGCATCTGCAAGTGTAGATGTAGTAATTTTCAATGATATTACGTTCATTAATTCTTTGTTTCAATTCAATGACACTGCATCAACTTAAAGTAGAAGTATGTACTCTTTTTCTCTTAAAACCTAAGTATTGGTCGAGGTTAGAAGTCACATATGGTTGATTTTGAGCGGTTTTTCTTGTATTACTTAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAACTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGTAACAACATCAGATATTATATTCTACCCGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGGTATGTCCTGTCCTTGCATTCTGGCATGTACTTTAGTCAAATTGTTTATACTGAATCATATGCTATCCATTATCAAATGTGTTGCTTATGCATTTCTACACTCTACTCCAACTACAGGGAGACCTTTGGGACGTGGACGAGGACGTGGCCGTGGGCGTGGTCGTGGGCGTGGACGCTAGATTTGTGGCAGTTGTTTCAATTTTTGAGACCTGTAGTGTAAACACTTGCATTGTAGGGAAAGATTATGAATTTTGGGACACAAAAAAGTGGTATTGCATTTCACTGTCCAATCTCGTATGTAGTTTATTACAATGCTATCCAGTTGTTTTTCCTATGATTGATATAGCCTTGCTATGTTTTCTTCTAGTGCTTGGATCTGTTAATGATTTACTCTAATATCATCACAATGATAAAACCCTAGCATGTCTCTAGATTGGAATCTCGTTTTTTACTTTCAAACCTGGTAGATTTTGTAGTCATGCAGTACTTGAGTTGGTTACAATCAATTCAAGTGGAGACTCCTTTAGAGCTCTTTCTTCCTCCATTTGCTTTCTTTCTACTTCTCACACAAACAATTCACTGTGGGGGTTTAGTAGAGACTATGAAATCTGAGCTTATTTCTCTGCGACCTGCTGTTCTTGAAGACATTATGGAAAGTACAAATAACTACGTAAAGACTATCTTGTTCAGATTCAATTCATGGTTATTGTTCTTGTGAATAGATTTGCTCACTTTTATATTGATTTCTGTTTCCTTACGGTTCTTACTTTGGTGCTATACTGATTTATTCCCTTGTGAATCGAAGGGACGTGTGAAGGGCAAATTATTGTACTTGGTATGTTATTATAGATATAATAGTTCATAATGCACAGGTTAAGAGGTATTATTGAAATATATTGATCAATTCAAATATATCCTCACTTTGACTTGGGAATGAGTTTTAAGGAAAAAATTAAATAAATATATGTTGGATAACTTTTACTTAAGATCAGGTTAAATTACCATGATTTTGGTAGTTGTGTATTAAGACATGGGTATTTAACATTTAAAGATCACCTTTTATCTGACAAGTTTTGTTGGGTCGGATGAATATTTTGGATGGGCTTGTTAGGAAGAGGACCTAATGGGTCCTTATTGATGTACTTTGTGTCGAAAGGCGGAGGATGACTTGGATCGCCTGCAAGGTCTGTGTGGAGTTGCTTCTTACCGGAGTTTGATGTTCATACAGTTGGGTAGAGGGATATTAGTACGACGATCAGGGAGTTCCTCTTTCGTTTGCCTTTCAGAGAGAAAAGGTTGCCCTTTATGGTTTGTTGGAGTGTATGCTCTGTTGTAGAATATTTTGGAGGGGGGGAAGGTGAAGAAACTATGAAGTGTTCAAATGTATGGATAGGGATCCTAATGAGATTTGGTTCTTAGTGAAGTTTCATGTTTTATTGTGTGTTTTAGTTTCAAAGTTTTTTTTTGTAATTATTCTATAGGAAACATTTTACTTAGTTGAAATCCCCTTTTGCAGAAGGATAGTTTTGTGGACTTGTTTTTTTTGTTGTATGTCCTTGTATTCTTATATATTTTATAATGAAAGTTATTGATTCTATCTAAAAAAAGAAAAAAAATTTAGAAATCACGTGGCGAGAATTAACTTATATAATCAATTTCATTTTCATGTTAAAAAAAAAAAAAAACTTATCAGCTATCAATTAAAAATATTTTTATTTCCAAAAAAAAATAAAAGATAGATATGTACGTGTGTGTATGTATGTATATGAATATGAAAGGGTTGTTTGCTATATTAGATTCTTTTTCTTTTTTATATATATTTGTAAATAGTTTGAGAATTTTTTTTCATTTATAATAATTTTTCATATATTTACTTTTGAAAAAAAAAAATTTTGATTATGAACCTTTTAAATTGTATCAATTGGTTTTCTAAACTTTCATCAAACTGGGCTCTAAACTTAAATAAGTATACAATTTTTACCTTCAAATTTTACTAATTTTAACAGAAAATCATTAAAAAAATTTATAAACAAATAAAATTTTGCAAAAAATTTTTTTGACAAATACAAAAATTAACTATTTAATATCTTTGTAAAAATTCATAAATCTCATAAAAAAAGCTAATGTCTTCTTATCTAAAATTTTATCACAATTCATTGGATAACAAAAAGTTTTTTTTAATGAACATTTGGAGTGAGAATTTATTAGAGGGTTTCTATAATACATTTATCGGCAACTAGATCTCAATTACGTCTTTTGGCCCTTCTTTCGCCTTGCGAATAAGTCTCGACTAACTTGTAAGAGAACTCGCTAGTGCACTACGGAGTTGAACACATTCTGATGCCTAAGTTATTACAAGAATTATTTAGTTTCGCTAAGCACTTGGAAGATTACTAATCTCTTGAGGAGGTGGAGGAATGAACTATAGAGTTCATTGTCTGACATTCACTTGAAGCATGTGCAATATTGGAAGCGTCATTGTAGGTGTAGCTCTAAGATGGTAGGTTTTCGGCCAATGAGTTGGCGCCACTGCGGTCCCTCAAGTATTGAGTCAACTAGGCAGAGCTTGTTTTAAAACTAAAAAAAAAAATAGAATAGTTATAAAAAACTTGTTTTTGTTTTTAAAATTTAAATAAGAATTCAAATGTTTCTAAGAAAAAATATATATAAAATTGAAAAATTAAGAAGAAAAAACTATAAACCATTTTGTAATGGTTATCAAATGCGGCTGGGATATTGTATTCCAATCTTGTAAGGAAAATTGTCCAAGGGGAAGAGGTTGGAGGAATTGAGCACTGGCAATTTCAAGGTACGCACGACAGAGTAGAATAATGAAATAATTTATCCCCATCATCTTCTGCTTCTATGAAAATCGTAGAATTTTTCAATACTGGACCATTTTATACTTGAATTAAAGTGATTTAGCTTTTACTTTTGTAATTAGTGCCTCTAAAATCAGGTCTCCCGACGGTTTACGGTGAAGTAGTTATTGGATTCTTGGTTGTCCTAAATATCCAATGTTGAAGAAGGAATGCAAAGTTATCACAACCATGTTCTGATACCTTGGAAAAAGGCGTGTATTATATGCAAGGAAAAGGTGCAGTGGGGCGTGGATGCAGCCATTAGTCCATGGCGATAAGAAGCTTGATTGGCCAAATTCAGTTAGCCTTATTCAGGTTTCTTCCACTGATGACTCAGGACTTGCAACTTTCTGTGAACCTGTGGGGAAGCGCAACTCAAACCACTCGTTCACCGCAGGGATGGCTCACTGTGTAGGGCTTAGGTTTGATGTCATTATTACAGTTTTTGTTCAGTTAATGAATTTAAAGAGGAAATTCCTGACTGACTGGACTAAGAAGTAGACATGGATAGCTTTAGTTCAAAATGGATTCTTATGCTTGTCACTATTATGGTGATTTTAGACTCCCACACCCACACACTGCTTAGGATGATCACCACTAGTATAAGTAGGGATTTGCATATCATTAACACAGAATTCCCTGCAACCTGAACTTCACTAGTGGCTGTTGTTACAATTTCCCTTCATGGTTATACTTATGTGGCAGGACGCAGTTGTTGTGAGTCTATAGCATGGTAAAGTATGCTGCCGTTGCTCGTGTGGTTGCTGAGATTTTTATGAACTTTGCAAGGACCAGATACCAAGAGAAGATATGGGACCATGCTGCTGGTATTATCATTGCAGAAGCAGCGAGAGGTGTGGTAACAGATTCCAGAGGTCGTCTGTTACTTAGAAGGTCTCCATCGGGGAATAATTGTTTGCTCGGGGTCAATCGTACAAGAGAAAATCATTAG

mRNA sequence

TGTTCTTTAAAGCAAAACCCATCGGGACAAAACCGCGGCAATCTCCCAATTTCCTCTCCCTCGCTTCGTTGTTTGAAACCCTACATTCTTCATTTCCTCTGCAATCATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCACGGCACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAACTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGTAACAACATCAGATATTATATTCTACCCGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGATATAATAGTTCATAATGCACAGGTTAAGAGGCGTGTATTATATGCAAGGAAAAGGTGCAGTGGGGCGTGGATGCAGCCATTAGTCCATGGCGATAAGAAGCTTGATTGGCCAAATTCAGTTAGCCTTATTCAGGTTTCTTCCACTGATGACTCAGGACTTGCAACTTTCTGTGAACCTGTGGGGAAGCGCAACTCAAACCACTCGTTCACCGCAGGGATGGCTCACTGTGTAGGGCTTAGGTTTGATGTCATTATTACATATGCTGCCGTTGCTCGTGTGGTTGCTGAGATTTTTATGAACTTTGCAAGGACCAGATACCAAGAGAAGATATGGGACCATGCTGCTGGTATTATCATTGCAGAAGCAGCGAGAGGTGTGGTAACAGATTCCAGAGGTCGTCTGTTACTTAGAAGGTCTCCATCGGGGAATAATTGTTTGCTCGGGGTCAATCGTACAAGAGAAAATCATTAG

Coding sequence (CDS)

ATGAAGCTTGTTAGGTTTTTGATGAAGCTCAACAATGAGACTGTCTCAATCGAGCTCAAAAATGGAACTGTTGTCCACGGCACTATCACAGGTGTGGATATCAGCATGAATACACATTTGAAGGCTGTGAAACTTACTCTAAAGGGGAAAAATCCAGTTACCATGGATCATTTAAGTGTGAGGGGTAACAACATCAGATATTATATTCTACCCGACAGCTTGAATCTTGAGACTTTACTTGTTGAAGAGACACCCAGGGTCAAGCCCAAGAAACCAACTGCAGATATAATAGTTCATAATGCACAGGTTAAGAGGCGTGTATTATATGCAAGGAAAAGGTGCAGTGGGGCGTGGATGCAGCCATTAGTCCATGGCGATAAGAAGCTTGATTGGCCAAATTCAGTTAGCCTTATTCAGGTTTCTTCCACTGATGACTCAGGACTTGCAACTTTCTGTGAACCTGTGGGGAAGCGCAACTCAAACCACTCGTTCACCGCAGGGATGGCTCACTGTGTAGGGCTTAGGTTTGATGTCATTATTACATATGCTGCCGTTGCTCGTGTGGTTGCTGAGATTTTTATGAACTTTGCAAGGACCAGATACCAAGAGAAGATATGGGACCATGCTGCTGGTATTATCATTGCAGAAGCAGCGAGAGGTGTGGTAACAGATTCCAGAGGTCGTCTGTTACTTAGAAGGTCTCCATCGGGGAATAATTGTTTGCTCGGGGTCAATCGTACAAGAGAAAATCATTAG

Protein sequence

MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTADIIVHNAQVKRRVLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTAGMAHCVGLRFDVIITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGVVTDSRGRLLLRRSPSGNNCLLGVNRTRENH
Homology
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BLAST of Clc11G19730 vs. NCBI nr
Match: MQL92745.1 (hypothetical protein [Colocasia esculenta])

HSP 1 Score: 189.5 bits (480), Expect = 3.5e-44
Identity = 98/129 (75.97%), Postives = 109/129 (84.50%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLK VKLT+KGKNPVT+DHLSV
Sbjct: 54  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSV 113

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTADI-IVHNAQVKRRVLYARKRCSGAWM 120
           RGNNIRYYILPDSLN+ETLLVEETPRVKPKKPTAD+ +V  A     V+    +C G  +
Sbjct: 114 RGNNIRYYILPDSLNIETLLVEETPRVKPKKPTADLQVVAGAVDVGAVVAEAVKCGGKVI 173

Query: 121 QPLVHGDKK 129
           +  + G+ K
Sbjct: 174 EGEIRGEGK 182

[Close]
BLAST of Clc11G19730 vs. NCBI nr
Match: XP_038897109.1 (PAP-specific phosphatase HAL2-like [Benincasa hispida])

HSP 1 Score: 188.3 bits (477), Expect = 7.8e-44
Identity = 94/129 (72.87%), Postives = 105/129 (81.40%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YA+K CSGAWMQPLVHGDKKL+WPNS SLIQVSS DD  LATFCEPV KRNSNHSFTA
Sbjct: 211 VIYAKKSCSGAWMQPLVHGDKKLEWPNSASLIQVSSIDDPALATFCEPVEKRNSNHSFTA 270

Query: 167 GMAHCVGLRFDVI-----ITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+A+ VGLR   +     + YAA+AR  AEIFM FART Y+EKIWDHAAG+II EAA GV
Sbjct: 271 GLAYSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGV 330

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 331 VTDAGGRPL 339

[Close]
BLAST of Clc11G19730 vs. NCBI nr
Match: XP_008454658.1 (PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo])

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-43
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YA+K C+GAWMQPLVHGDKKL+WPNS SLIQVSS DD   ATFCEPV KRNSNHSFTA
Sbjct: 212 VIYAKKSCNGAWMQPLVHGDKKLEWPNSASLIQVSSIDDPAHATFCEPVEKRNSNHSFTA 271

Query: 167 GMAHCVGLRFDVI-----ITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+AH VGLR   +     + YAA+AR  AEIFM FART Y+EKIWDHAAG+II EAA GV
Sbjct: 272 GLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGV 331

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 332 VTDAGGRPL 340

[Close]
BLAST of Clc11G19730 vs. NCBI nr
Match: KAA0036838.1 (PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa] >TYJ95905.1 PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa])

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-43
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YA+K C+GAWMQPLVHGDKKL+WPNS SLIQVSS DD   ATFCEPV KRNSNHSFTA
Sbjct: 135 VIYAKKSCNGAWMQPLVHGDKKLEWPNSASLIQVSSIDDPAHATFCEPVEKRNSNHSFTA 194

Query: 167 GMAHCVGLRFDVI-----ITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+AH VGLR   +     + YAA+AR  AEIFM FART Y+EKIWDHAAG+II EAA GV
Sbjct: 195 GLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGV 254

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 255 VTDAGGRPL 263

[Close]
BLAST of Clc11G19730 vs. NCBI nr
Match: KAG7024860.1 (PAP-specific phosphatase HAL2-like protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.8 bits (473), Expect = 2.3e-43
Identity = 92/129 (71.32%), Postives = 104/129 (80.62%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YARK C GAWMQPLVHGD+KL+WPNS SL++VSS DD  LATFCEPV KRNSNHSFTA
Sbjct: 211 VIYARKSCGGAWMQPLVHGDEKLEWPNSASLVRVSSIDDPALATFCEPVEKRNSNHSFTA 270

Query: 167 GMAHCVGLRFDVI-----ITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+AH VGLR   +     + YAA+AR  AEIFM FART Y+EKIWDHAAG+II EAA GV
Sbjct: 271 GLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGV 330

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 331 VTDAGGRPL 339

[Close]
BLAST of Clc11G19730 vs. ExPASy Swiss-Prot
Match: Q9SY09 (Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 7.3e-45
Identity = 89/94 (94.68%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTA 94

[Close]
BLAST of Clc11G19730 vs. ExPASy Swiss-Prot
Match: Q9SSF1 (Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A PE=3 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 5.3e-43
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA 94

[Close]
BLAST of Clc11G19730 vs. ExPASy Swiss-Prot
Match: Q3ZC10 (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-32
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]
BLAST of Clc11G19730 vs. ExPASy Swiss-Prot
Match: P62314 (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-32
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]
BLAST of Clc11G19730 vs. ExPASy Swiss-Prot
Match: Q4R5F6 (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 3.2e-32
Identity = 70/94 (74.47%), Postives = 83/94 (88.30%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLKAVK+TLK + PV ++ LS+
Sbjct: 1  MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct: 61 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]
BLAST of Clc11G19730 vs. ExPASy TrEMBL
Match: A0A5A7T244 (3'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002080 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YA+K C+GAWMQPLVHGDKKL+WPNS SLIQVSS DD   ATFCEPV KRNSNHSFTA
Sbjct: 135 VIYAKKSCNGAWMQPLVHGDKKLEWPNSASLIQVSSIDDPAHATFCEPVEKRNSNHSFTA 194

Query: 167 GMAHCVGLRFDVI-----ITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+AH VGLR   +     + YAA+AR  AEIFM FART Y+EKIWDHAAG+II EAA GV
Sbjct: 195 GLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGV 254

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 255 VTDAGGRPL 263

[Close]
BLAST of Clc11G19730 vs. ExPASy TrEMBL
Match: A0A1S3BZX2 (3'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo OX=3656 GN=LOC103495010 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 1.1e-43
Identity = 93/129 (72.09%), Postives = 104/129 (80.62%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YA+K C+GAWMQPLVHGDKKL+WPNS SLIQVSS DD   ATFCEPV KRNSNHSFTA
Sbjct: 212 VIYAKKSCNGAWMQPLVHGDKKLEWPNSASLIQVSSIDDPAHATFCEPVEKRNSNHSFTA 271

Query: 167 GMAHCVGLRFDVI-----ITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+AH VGLR   +     + YAA+AR  AEIFM FART Y+EKIWDHAAG+II EAA GV
Sbjct: 272 GLAHSVGLRKQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGV 331

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 332 VTDAGGRPL 340

[Close]
BLAST of Clc11G19730 vs. ExPASy TrEMBL
Match: A0A6J1J227 (3'(2'),5'-bisphosphate nucleotidase OS=Cucurbita maxima OX=3661 GN=LOC111480604 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 92/129 (71.32%), Postives = 105/129 (81.40%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YA++ CSGAWMQPLVHG+KKL+WPNS SLIQVSS DD  LATFCEPV K+NSNHSFTA
Sbjct: 211 VIYAKRNCSGAWMQPLVHGNKKLEWPNSASLIQVSSIDDPALATFCEPVEKQNSNHSFTA 270

Query: 167 GMAHCVGLRFDVI-----ITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+AH VGLR   +     + YAA+AR  AEIFM FART Y+EKIWDHAAG+II EAA GV
Sbjct: 271 GLAHSVGLREQPLRVYSMVKYAAIARGDAEIFMKFARTGYREKIWDHAAGVIIVEAAGGV 330

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 331 VTDAGGRPL 339

[Close]
BLAST of Clc11G19730 vs. ExPASy TrEMBL
Match: A0A199V0P2 (Small nuclear ribonucleoprotein Sm D1 OS=Ananas comosus OX=4615 GN=ACMD2_11244 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.4e-43
Identity = 93/100 (93.00%), Postives = 97/100 (97.00%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
           MKLVRFLMKLNNETV+IELKNGTVVHGTITGVDISMNTHLK VKLTLKGKNPVT+DHLSV
Sbjct: 1   MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSV 60

Query: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTADIIVHN 101
           RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAD I+ +
Sbjct: 61  RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTADSILRD 100

[Close]
BLAST of Clc11G19730 vs. ExPASy TrEMBL
Match: A0A3Q7I508 (Small nuclear ribonucleoprotein Sm D1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 92/97 (94.85%), Postives = 96/97 (98.97%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLKAVK+TLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKAVKITLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTADII 98
          RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA I+
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGIV 97

[Close]
BLAST of Clc11G19730 vs. TAIR 10
Match: AT4G02840.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 182.2 bits (461), Expect = 5.2e-46
Identity = 89/94 (94.68%), Postives = 94/94 (100.00%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKAVKLTLKGKNPVT+DHLSV
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSV 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTA 94

[Close]
BLAST of Clc11G19730 vs. TAIR 10
Match: AT3G07590.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-44
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA 94

[Close]
BLAST of Clc11G19730 vs. TAIR 10
Match: AT3G07590.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 176.0 bits (445), Expect = 3.7e-44
Identity = 86/94 (91.49%), Postives = 92/94 (97.87%), Query Frame = 0 

Query: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKAVKLTLKGKNPVTMDHLSV 60
          MKLVRFLMKLNNETVSIELKNGTVVHGTITGVD+SMNTHLK VK++LKGKNPVT+DHLS+
Sbjct: 1  MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSL 60

Query: 61 RGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
          RGNNIRYYILPDSLNLETLLVE+TPRVKPKKP A
Sbjct: 61 RGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVA 94

[Close]
BLAST of Clc11G19730 vs. TAIR 10
Match: AT4G02840.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 174.1 bits (440), Expect = 1.4e-43
Identity = 89/104 (85.58%), Postives = 94/104 (90.38%), Query Frame = 0 

Query: 1   MKLVRFLMKLNNETVSIELKNGTVVHGTIT----------GVDISMNTHLKAVKLTLKGK 60
           MKLVRFLMKLNNETVSIELKNGT+VHGTIT          GVD+SMNTHLKAVKLTLKGK
Sbjct: 1   MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGK 60

Query: 61  NPVTMDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTA 95
           NPVT+DHLSVRGNNIRYYILPDSLNLETLLVE+TPR+KPKKPTA
Sbjct: 61  NPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTA 104

[Close]
BLAST of Clc11G19730 vs. TAIR 10
Match: AT5G54390.1 (HAL2-like )

HSP 1 Score: 130.2 bits (326), Expect = 2.4e-30
Identity = 68/129 (52.71%), Postives = 90/129 (69.77%), Query Frame = 0 

Query: 107 VLYARKRCSGAWMQPLVHGDKKLDWPNSVSLIQVSSTDDSGLATFCEPVGKRNSNHSFTA 166
           V+YA++    AWMQPL+ G      P S +L++VSS DD  LAT CEPV + NSNH FTA
Sbjct: 209 VMYAKRGSGQAWMQPLIVG----GIPESATLLKVSSVDDPVLATVCEPVERANSNHLFTA 268

Query: 167 GMAHCVG-----LRFDVIITYAAVARVVAEIFMNFARTRYQEKIWDHAAGIIIAEAARGV 226
           G+A+ +G     +R   ++ YAA+AR  AE+FM FA++ Y+EKIWDHAAG++I E A GV
Sbjct: 269 GLANSMGVRKQPMRVYSMVKYAAIARGDAEVFMKFAQSSYKEKIWDHAAGVVIVEEAGGV 328

Query: 227 VTDSRGRLL 231
           VTD+ GR L
Sbjct: 329 VTDAGGRNL 333

The following BLAST results are available for this feature:
BLAST of Clc11G19730 vs. NCBI nr
Match NameE-valueIdentityDescription
MQL92745.13.5e-4475.97hypothetical protein [Colocasia esculenta][more]
XP_038897109.17.8e-4472.87PAP-specific phosphatase HAL2-like [Benincasa hispida][more]
XP_008454658.12.3e-4372.09PREDICTED: PAP-specific phosphatase HAL2-like [Cucumis melo][more]
KAA0036838.12.3e-4372.09PAP-specific phosphatase HAL2-like [Cucumis melo var. makuwa] >TYJ95905.1 PAP-sp... [more]
KAG7024860.12.3e-4371.32PAP-specific phosphatase HAL2-like protein, partial [Cucurbita argyrosperma subs... [more]
BLAST of Clc11G19730 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SY097.3e-4594.68Small nuclear ribonucleoprotein SmD1b OS=Arabidopsis thaliana OX=3702 GN=SMD1B P... [more]
Q9SSF15.3e-4391.49Small nuclear ribonucleoprotein SmD1a OS=Arabidopsis thaliana OX=3702 GN=SMD1A P... [more]
Q3ZC103.2e-3274.47Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus OX=9913 GN=SNRPD1 PE=3 SV=1[more]
P623143.2e-3274.47Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens OX=9606 GN=SNRPD1 PE=1 SV=... [more]
Q4R5F63.2e-3274.47Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis OX=9541 GN=SNRPD1 P... [more]
BLAST of Clc11G19730 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7T2441.1e-4372.093'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A1S3BZX21.1e-4372.093'(2'),5'-bisphosphate nucleotidase OS=Cucumis melo OX=3656 GN=LOC103495010 PE=3... [more]
A0A6J1J2271.4e-4371.323'(2'),5'-bisphosphate nucleotidase OS=Cucurbita maxima OX=3661 GN=LOC111480604 ... [more]
A0A199V0P21.4e-4393.00Small nuclear ribonucleoprotein Sm D1 OS=Ananas comosus OX=4615 GN=ACMD2_11244 P... [more]
A0A3Q7I5081.9e-4394.85Small nuclear ribonucleoprotein Sm D1 OS=Solanum lycopersicum OX=4081 PE=3 SV=1[more]
BLAST of Clc11G19730 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G02840.15.2e-4694.68Small nuclear ribonucleoprotein family protein [more]
AT3G07590.13.7e-4491.49Small nuclear ribonucleoprotein family protein [more]
AT3G07590.23.7e-4491.49Small nuclear ribonucleoprotein family protein [more]
AT4G02840.21.4e-4385.58Small nuclear ribonucleoprotein family protein [more]
AT5G54390.12.4e-3052.71HAL2-like [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 5..70
e-value: 1.1E-16
score: 71.5
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 5..69
e-value: 2.3E-17
score: 62.4
NoneNo IPR availableGENE3D2.30.30.100coord: 1..85
e-value: 6.4E-33
score: 114.1
NoneNo IPR availableGENE3D3.40.190.80coord: 139..245
e-value: 1.0E-20
score: 75.7
NoneNo IPR availablePANTHERPTHR23338:SF48SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1coord: 1..99
NoneNo IPR availableSUPERFAMILY56655Carbohydrate phosphatasecoord: 115..236
IPR000760Inositol monophosphatase-likePFAMPF00459Inositol_Pcoord: 110..235
e-value: 2.6E-14
score: 53.4
IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3PANTHERPTHR23338SMALL NUCLEAR RIBONUCLEOPROTEIN SMcoord: 1..99
IPR034102Small nuclear ribonucleoprotein D1CDDcd01724Sm_D1coord: 2..93
e-value: 7.22594E-62
score: 187.432
IPR010920LSM domain superfamilySUPERFAMILY50182Sm-like ribonucleoproteinscoord: 4..91

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G19730.2Clc11G19730.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046855 inositol phosphate dephosphorylation
biological_process GO:0046854 phosphatidylinositol phosphate biosynthetic process
biological_process GO:0006396 RNA processing
biological_process GO:0000387 spliceosomal snRNP assembly
biological_process GO:0006790 sulfur compound metabolic process
cellular_component GO:0071013 catalytic step 2 spliceosome
cellular_component GO:0000243 commitment complex
cellular_component GO:0034715 pICln-Sm protein complex
cellular_component GO:0071011 precatalytic spliceosome
cellular_component GO:0034719 SMN-Sm protein complex
cellular_component GO:0005689 U12-type spliceosomal complex
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005686 U2 snRNP
cellular_component GO:0005687 U4 snRNP
cellular_component GO:0005682 U5 snRNP
cellular_component GO:0097526 spliceosomal tri-snRNP complex
molecular_function GO:0008441 3'(2'),5'-bisphosphate nucleotidase activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0003723 RNA binding