Clc11G19680 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G19680
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionNAC domain protein
LocationClcChr11: 30174795 .. 30175663 (+)
RNA-Seq ExpressionClc11G19680
SyntenyClc11G19680
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CTTGGGAGGAAGTTGAATAATTGAGAGAAGAGGTTTGCAGTTTCCAAGTTGTTTGGTTATATGGAGAAACGGCTTAAGGACCAAGCAATGAAATCAAAAACCGAGTGCGCCATCAGCCAGTCAAGTCAATGCCCTCCAAATTTGGTCAACTTCTTTGAAAATTCCAACCATTTATTTTTCCCCTTAAATACAGAATCAATACCCACTTTTCTCCAAAAGTTCCATCTGGGTTTTGAATCTTTTGATCATTCTAATTCAAAACTCCAAATTTTTTACTAAAATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGTCGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGCGGTGCCCGGAGATAAGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGCAGGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTTTCTAATATGTCTATGGCGGAGAGTTAATTTTTTTTTTTTTTTTTGATTTTTTTGGATTATTCTTTGATTCAAATTCAACGAATTTCTGCGGTATGTTTGGAGAATCTGTGGACGATTCAGTTCCTAATTTTTGGAGTGAAATTACGGAATTGTTTGTGGGTTAGTTTGTTAACTGTTCATCCATTTTTTGGTGTAATACTTTTTCTAAAAAGTTATTGATCTAAATTCTTATATGAAACGAAATTAAGTTAATTAGAAATTTGCGGAAAGAAGGTCATTGAGAAGAGGAATTGATATATAACTGACAATAAAAAAAAAT

mRNA sequence

CTTGGGAGGAAGTTGAATAATTGAGAGAAGAGGTTTGCAGTTTCCAAGTTGTTTGGTTATATGGAGAAACGGCTTAAGGACCAAGCAATGAAATCAAAAACCGAGTGCGCCATCAGCCAGTCAAGTCAATGCCCTCCAAATTTGGTCAACTTCTTTGAAAATTCCAACCATTTATTTTTCCCCTTAAATACAGAATCAATACCCACTTTTCTCCAAAAGTTCCATCTGGGTTTTGAATCTTTTGATCATTCTAATTCAAAACTCCAAATTTTTTACTAAAATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGTCGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGCGGTGCCCGGAGATAAGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGCAGGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTTTCTAATATGTCTATGGCGGAGAGTTAATTTTTTTTTTTTTTTTTGATTTTTTTGGATTATTCTTTGATTCAAATTCAACGAATTTCTGCGGTATGTTTGGAGAATCTGTGGACGATTCAGTTCCTAATTTTTGGAGTGAAATTACGGAATTGTTTGTGGGTTAGTTTGTTAACTGTTCATCCATTTTTTGGTGTAATACTTTTTCTAAAAAGTTATTGATCTAAATTCTTATATGAAACGAAATTAAGTTAATTAGAAATTTGCGGAAAGAAGGTCATTGAGAAGAGGAATTGATATATAACTGACAATAAAAAAAAAT

Coding sequence (CDS)

ATGCCGACAATTTTTCAGTCCCAACCCCAGCCTCGTCGGACTACCTCCGTCGCCGGACGGGAAGCCTGCCGGGGCCGTACCGCTAGATCCACTTGCAGGAGCTTTAGTTTTGGTGGGATGGTTAGAGGTGGCCGGAATTTGATGGCGGTGCCCGGAGATAAGTTCCGCCGGAATCAGGGAAGCAGAGAAGTTTTGAGAAGAGCGTTGATGCCGCCCAGCAGGAGACCCACTCTCCGGTGGATGAATTTCCGGCCAACTCCCAGTCGCCTTTCTAATATGTCTATGGCGGAGAGTTAA

Protein sequence

MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES
Homology
[Close]
BLAST of Clc11G19680 vs. NCBI nr
Match: XP_011652880.1 (uncharacterized protein LOC105435142 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 8.6e-39
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQG 60
          MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLMA+PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]
BLAST of Clc11G19680 vs. NCBI nr
Match: KGN60027.2 (hypothetical protein Csa_001878 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 1.9e-38
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQG 60
          MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLMA+PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAE+
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAEN 98

[Close]
BLAST of Clc11G19680 vs. NCBI nr
Match: KAA0036871.1 (uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ95931.1 uncharacterized protein E5676_scaffold110G002460 [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 4.3e-38
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQG 60
          MPTIFQSQP PRR+ SVAGREA R R  RSTCRS SFGGMVRGGRNLMA+PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]
BLAST of Clc11G19680 vs. NCBI nr
Match: KAG7024857.1 (hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.2 bits (365), Expect = 3.0e-31
Identity = 77/101 (76.24%), Postives = 84/101 (83.17%), Query Frame = 0 

Query: 1  MPTIFQSQPQPRRTTSV---AGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRR 60
          MPTIFQSQPQP R  S+   AGRE    R+ RSTCRSFSF GMVR GRN+M   GDKFRR
Sbjct: 1  MPTIFQSQPQPDRRPSLAAAAGREP--SRSIRSTCRSFSFSGMVRSGRNVMTAGGDKFRR 60

Query: 61 NQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES 99
          NQG REVLRRALMPP+R+PTLRW+NFRPTPSRLSNMSMAE+
Sbjct: 61 NQGRREVLRRALMPPTRKPTLRWLNFRPTPSRLSNMSMAEA 99

[Close]
BLAST of Clc11G19680 vs. NCBI nr
Match: KAG6607862.1 (hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sororia] >KAG7037392.1 hypothetical protein SDJN02_01017, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 122.9 bits (307), Expect = 1.6e-24
Identity = 69/98 (70.41%), Postives = 75/98 (76.53%), Query Frame = 0 

Query: 1  MPTIFQSQPQPRRTTSVAG--REACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRN 60
          MPTIFQSQ QP    S AG  RE  R R+ RS CRS SFGG+ RGGRN+ A  GDK RR 
Sbjct: 1  MPTIFQSQQQPASRPSHAGAVREGGRSRSLRSNCRSLSFGGVGRGGRNVTAA-GDKLRRL 60

Query: 61 QGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA 97
          QG RE+LRRAL PP+RRPTLRW+NFR TPSRLSNMSMA
Sbjct: 61 QGRREMLRRALTPPNRRPTLRWLNFRATPSRLSNMSMA 97

[Close]
BLAST of Clc11G19680 vs. ExPASy TrEMBL
Match: A0A0A0LD23 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 4.2e-39
Identity = 87/98 (88.78%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQG 60
          MPTIFQSQP PRRT SVAGRE  R R  RSTCRSFSFGGMVRGGRNLMA+PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRTPSVAGREPGRNRAVRSTCRSFSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSIMSMAES 98

[Close]
BLAST of Clc11G19680 vs. ExPASy TrEMBL
Match: A0A5A7T5L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G002460 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.1e-38
Identity = 86/98 (87.76%), Postives = 89/98 (90.82%), Query Frame = 0 

Query: 1  MPTIFQSQPQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDKFRRNQG 60
          MPTIFQSQP PRR+ SVAGREA R R  RSTCRS SFGGMVRGGRNLMA+PGD+ RRNQG
Sbjct: 1  MPTIFQSQPPPRRSPSVAGREAGRTRAVRSTCRSLSFGGMVRGGRNLMALPGDRCRRNQG 60

Query: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMAES 99
          SREVLRRALMPPSRRPTLRWMNFRPTPSRLS MSMAES
Sbjct: 61 SREVLRRALMPPSRRPTLRWMNFRPTPSRLSMMSMAES 98

[Close]
BLAST of Clc11G19680 vs. ExPASy TrEMBL
Match: A0A6N2MHB8 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 5.1e-13
Identity = 54/108 (50.00%), Postives = 64/108 (59.26%), Query Frame = 0 

Query: 1   MPTIFQSQ-----PQPRRTTSVAGREACRGRTA-------RSTCRSFSFGGMVRGGRNLM 60
           M TI Q Q     P P R +   G  A R   A       RSTC   +  G VR  ++  
Sbjct: 1   METISQKQTIRRLPIPARQSPGEGIRARRNNQAASISPGPRSTCTCSNRPGSVRCSKHGY 60

Query: 61  AVPGDKFRRNQGSREVLRRALMPPSRRPTLRWMNFRPTPSRLSNMSMA 97
            VP D+ RR+Q +RE+LRRAL PP+RR TLRW NF+PTPSRLSNMSMA
Sbjct: 61  LVPSDRLRRHQANREILRRALAPPNRRLTLRWFNFQPTPSRLSNMSMA 108

[Close]
BLAST of Clc11G19680 vs. ExPASy TrEMBL
Match: A0A6M2EHA0 (Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 29  RSTCRSFSFGGMVRGGRNLMAVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTP 88
           RSTC   +  G VR  ++   VPGDK  RR+Q ++E+LRRAL PP+RR TLRW NFRPTP
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYMVPGDKLIRRHQANKEILRRALAPPNRRLTLRWFNFRPTP 100

Query: 89  SRLSNMSMA 97
           SRLSNMSMA
Sbjct: 101 SRLSNMSMA 109

[Close]
BLAST of Clc11G19680 vs. ExPASy TrEMBL
Match: A0A4U5R551 (Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000006820 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 44/69 (63.77%), Postives = 52/69 (75.36%), Query Frame = 0 

Query: 29  RSTCRSFSFGGMVRGGRNLMAVPGDK-FRRNQGSREVLRRALMPPSRRPTLRWMNFRPTP 88
           RSTC   +  G VR  ++   VPGDK  RR+Q ++E+LRRAL PP+RR TLRW NFRPTP
Sbjct: 41  RSTCTCSNRPGSVRCSKHGYMVPGDKLIRRHQANKEILRRALAPPNRRLTLRWFNFRPTP 100

Query: 89  SRLSNMSMA 97
           SRLSNMSMA
Sbjct: 101 SRLSNMSMA 109

[Close]
BLAST of Clc11G19680 vs. TAIR 10
Match: AT3G15518.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 5.2e-10
Identity = 39/89 (43.82%), Postives = 46/89 (51.69%), Query Frame = 0 

Query: 9   PQPRRTTSVAGREACRGRTARSTCRSFSFGGMVRGGRNLMAVPGDK---FRRNQGSREVL 68
           P    T  +  R    G   R  C      G  +  R+   VP D+    + + GSREVL
Sbjct: 16  PGRSETNRIRRRSHGSGLRVRVACTCSGRPGSTKCARHGFVVPSDERLMRKASDGSREVL 75

Query: 69  RRALMPPSRRPTLRWMNFRPTPSRLSNMS 95
           RRAL PP RR  LRW+NFRPTPSRL  MS
Sbjct: 76  RRALTPPIRRMNLRWLNFRPTPSRLCKMS 104

The following BLAST results are available for this feature:
BLAST of Clc11G19680 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_011652880.18.6e-3988.78uncharacterized protein LOC105435142 [Cucumis sativus][more]
KGN60027.21.9e-3887.76hypothetical protein Csa_001878 [Cucumis sativus][more]
KAA0036871.14.3e-3887.76uncharacterized protein E6C27_scaffold20G001820 [Cucumis melo var. makuwa] >TYJ9... [more]
KAG7024857.13.0e-3176.24hypothetical protein SDJN02_13676, partial [Cucurbita argyrosperma subsp. argyro... [more]
KAG6607862.11.6e-2470.41hypothetical protein SDJN03_01204, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc11G19680 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc11G19680 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LD234.2e-3988.78Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G852440 PE=4 SV=1[more]
A0A5A7T5L72.1e-3887.76Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6N2MHB85.1e-1350.00Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS358945 PE=4 SV=... [more]
A0A6M2EHA01.5e-1263.77Uncharacterized protein OS=Populus davidiana OX=266767 PE=4 SV=1[more]
A0A4U5R5511.5e-1263.77Uncharacterized protein OS=Populus alba OX=43335 GN=D5086_0000006820 PE=4 SV=1[more]
BLAST of Clc11G19680 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G15518.15.2e-1043.82unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..29
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 76..98
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 84..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G19680.1Clc11G19680.1mRNA