Clc11G09650 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G09650
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionSerine/threonine-protein phosphatase 7 long form-like protein isoform X1
LocationClcChr11: 12447059 .. 12448726 (+)
RNA-Seq ExpressionClc11G09650
SyntenyClc11G09650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTATTTACAGCAAGTCGATTTTATTGGAGTTGAACAAATTGGATTTATACAGTTAGACTGGCACTTCATTACTGCTCTAGTAGAGCGCTGGAGGCTAGAGACCCACACATTTCATATGCCTAGTTGAGAATGTACAATTACGCTGCAGGACATTGCAGTTCAATTTGGACTACCAATGGATAGAGAACTTGTGACTAGATCGTTGCAGTATGATTGGAAATAGGTTTGTGAGGATTATTTGGTCGTTCGACCAGTTGACCTGAAAGGCTCAAGGTTGAGTATCCCATGGCTAGCCTCTCAATTTAAAGAATTGTCCCATGTTGTTGATGATGTCAGTATATAAAGATATGCACGAGCATATATAATGTAGCTTATCGGAGGATTTCTGTTTGCTGACAAGTCCAACACATTGGTGCATCTAATGTTTCTTCCACTATTGGTCAGTTTTGAGCGAGTTGTTAATTACTCGTAGGGTGGTGTCTATCTTGCATGGCTTTAGAGAGAGTTATGTCAGGTTAGTCATGCACAAGCTTTGGAAATAGCAGGCCCACGGATACTACTTCAAGTATGGAGTCCAATTACAACCTCCTCCAAATCATTTTATAAGGCGCCAATTTAGTGTCAGGTATTGTTTTCTGTATATATTTATTATTTTGTCAATATAAGTAGTAAAGTATTTTAATTGTTTTATATCTATGTGATAGGTGGAGTGGTATTTTAGCTGCATCTGAACAATCAACAAACATGTTACTAGTATCCCGCCTAATATTTGACCGATTGATGCAGAATCAGGTAACAATATATATGTTGCATATACAAATGAATATTACATATTATATATGTTGCATATACAATTGTAGAGTGGCATCAACTAGATCGTGTTTTGAGACAATTCGGTCTGCGACAAACGATATCGACGTTGTGTAATACACTCCCTCAACTAGACCAAATTGATTTAAGAGGTAACATGACCAAAATTGGCGTCAAATTCATGCAGAATATATATCCTTGTGGCATGCACGTCATGATTGTTGTGCACAAATAGAAATAATACATGAGTCAGTTGTGTCAGATCACTTGTCCTGTTACGACTCAATCACAAGAAGATGTATCGCACGTGGCGATGCTTACTATTATTGCATGGTAAGAATTTTATTATCTAGTAATCTTCATTTATATGATAAGGATATTATTGTATACTTTACTTTTTTCATCATATAGAATAATTTTGTCTACGATGTGCACAATTAGTCATTACAGCACCATTTACCAAAGTTAAGTTTAATGTGTGACCAAAACATGATAAATGTTGAAAATATCATTCAACATATACGGAGACTCAATGTTGCTGACACTGATCGAAGATGTATTCGTCGTAGATGACAAAGACAACATGACGAAGCTATTCTAGAGCAACACGATTACCAAAAACCCCAACATATTACATGATCTAGTTCCATATTCTCTTGAATTGGCATTAGGAGTACATGCAGACATTGTATCTAGTTCTGGTCATCAACAGGAGTATTATGCGAATGATGAATTTCTGTCTGTCGTCATCCAACAGGATATTGACGATGTAATTCACCATCAGCAACATTTTGAAATGTCTGTGCCTCGTCGTGGACAACGTACGCGAAGAAGACCACCATGTGGCACCTGA

mRNA sequence

ATGTCTTATTTACAGCAAGTCGATTTTATTGGAGTTGAACAAATTGGATTTATACAGTTAGACTGGCACTTCATTACTGCTCTAGTAGAGCGCTGGAGGCTAGAGACCCACACATTTCATATGCCTATTGACCTGAAAGGCTCAAGGTTGAGTATCCCATGGCTAGCCTCTCAATTTAAAGAATTGTCCCATGTTGTTGATGATGCCCACGGATACTACTTCAAGTATGGAGTCCAATTACAACCTCCTCCAAATCATTTTATAAGGCGCCAATTTAGTGTCAGGTGGAGTGGTATTTTAGCTGCATCTGAACAATCAACAAACATGTTACTAGTATCCCGCCTAATATTTGACCGATTGATGCAGAATCAGAGCAACACGATTACCAAAAACCCCAACATATTACATGATCTAGTTCCATATTCTCTTGAATTGGCATTAGGAGTACATGCAGACATTGTATCTAGTTCTGGTCATCAACAGGAGTATTATGCGAATGATGAATTTCTGTCTGTCGTCATCCAACAGGATATTGACGATGTAATTCACCATCAGCAACATTTTGAAATGTCTGTGCCTCGTCGTGGACAACGTACGCGAAGAAGACCACCATGTGGCACCTGA

Coding sequence (CDS)

ATGTCTTATTTACAGCAAGTCGATTTTATTGGAGTTGAACAAATTGGATTTATACAGTTAGACTGGCACTTCATTACTGCTCTAGTAGAGCGCTGGAGGCTAGAGACCCACACATTTCATATGCCTATTGACCTGAAAGGCTCAAGGTTGAGTATCCCATGGCTAGCCTCTCAATTTAAAGAATTGTCCCATGTTGTTGATGATGCCCACGGATACTACTTCAAGTATGGAGTCCAATTACAACCTCCTCCAAATCATTTTATAAGGCGCCAATTTAGTGTCAGGTGGAGTGGTATTTTAGCTGCATCTGAACAATCAACAAACATGTTACTAGTATCCCGCCTAATATTTGACCGATTGATGCAGAATCAGAGCAACACGATTACCAAAAACCCCAACATATTACATGATCTAGTTCCATATTCTCTTGAATTGGCATTAGGAGTACATGCAGACATTGTATCTAGTTCTGGTCATCAACAGGAGTATTATGCGAATGATGAATTTCTGTCTGTCGTCATCCAACAGGATATTGACGATGTAATTCACCATCAGCAACATTTTGAAATGTCTGTGCCTCGTCGTGGACAACGTACGCGAAGAAGACCACCATGTGGCACCTGA

Protein sequence

MSYLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPIDLKGSRLSIPWLASQFKELSHVVDDAHGYYFKYGVQLQPPPNHFIRRQFSVRWSGILAASEQSTNMLLVSRLIFDRLMQNQSNTITKNPNILHDLVPYSLELALGVHADIVSSSGHQQEYYANDEFLSVVIQQDIDDVIHHQQHFEMSVPRRGQRTRRRPPCGT
Homology
[Close]
BLAST of Clc11G09650 vs. NCBI nr
Match: TYK03303.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa] >TYK12342.1 serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 77/258 (29.84%), Postives = 91/258 (35.27%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+GV Q+GF+QLDWH ITALVERWR ETHTFHMP                    
Sbjct: 135 YLEAAGFLGVSQVGFMQLDWHLITALVERWRPETHTFHMPCGECTITLQDVAVQLGLPVD 194

Query: 63  -------------------------DLKGSRLSIPWLASQFKELSHVVD--DAHGYYFKY 122
                                    D+KG RLS+PWLA QF+EL    D      Y   Y
Sbjct: 195 GEPLTGSLRYNWMLICNDYLGVVPPDMKGQRLSLPWLAEQFEELPPDADIVSVQRYARAY 254

Query: 123 GVQL-------------------------------------------------------- 139
            +QL                                                        
Sbjct: 255 IMQLIGGFLFADKSNNLVHCMFLQFLFDFDQAGTYAWGAATLAWLYRELCRASNAQSLEI 314

[Close]
BLAST of Clc11G09650 vs. NCBI nr
Match: TYK25184.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 77/258 (29.84%), Postives = 91/258 (35.27%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+GV Q+GF+QLDWH ITALVERWR ETHTFHMP                    
Sbjct: 101 YLEAAGFLGVSQVGFMQLDWHLITALVERWRPETHTFHMPCGECTITLQDVAVQLGLPVD 160

Query: 63  -------------------------DLKGSRLSIPWLASQFKELSHVVD--DAHGYYFKY 122
                                    D+KG RLS+PWLA QF+EL    D      Y   Y
Sbjct: 161 GEPLTGSLRYNWMLICNDYLGVVPPDMKGQRLSLPWLAEQFEELPPDADIVSVQRYARAY 220

Query: 123 GVQL-------------------------------------------------------- 139
            +QL                                                        
Sbjct: 221 IMQLIGGFLFADKSNNLVHCMFLQFLFDFDQAGTYAWGAATLAWLYRELCRASNAQSLEI 280

[Close]
BLAST of Clc11G09650 vs. NCBI nr
Match: KAA0044309.1 (serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa] >TYK02544.1 serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 96.7 bits (239), Expect = 2.6e-16
Identity = 77/258 (29.84%), Postives = 91/258 (35.27%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+GV Q+GF+QLDWH ITALVERWR ETHTFHMP                    
Sbjct: 53  YLEAAGFLGVSQVGFMQLDWHLITALVERWRPETHTFHMPCGECTITLQDVAVQLGLPVD 112

Query: 63  -------------------------DLKGSRLSIPWLASQFKELSHVVD--DAHGYYFKY 122
                                    D+KG RLS+PWLA QF+EL    D      Y   Y
Sbjct: 113 GEPLTGSLRYNWMLICNDYLGVVPPDMKGQRLSLPWLAEQFEELPPDADIVSVQRYARAY 172

Query: 123 GVQL-------------------------------------------------------- 139
            +QL                                                        
Sbjct: 173 IMQLIGGFLFADKSNNLVHCMFLQFLFDFDQAGTYAWGAATLAWLYRELCRASNAQSLEI 232

[Close]
BLAST of Clc11G09650 vs. NCBI nr
Match: XP_011656076.1 (serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >XP_031740838.1 serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >XP_031740839.1 serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sativus] >KAE8648996.1 hypothetical protein Csa_009127 [Cucumis sativus])

HSP 1 Score: 92.4 bits (228), Expect = 4.8e-15
Identity = 79/259 (30.50%), Postives = 93/259 (35.91%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+GV QIGF+QLDWH ITALVERWR ETHTFHMP                    
Sbjct: 53  YLEAAGFLGVSQIGFMQLDWHLITALVERWRPETHTFHMPCGECTITLQDVAIQLGLPVD 112

Query: 63  -------------------------DLKGSRLSIPWLASQFKEL---SHVV--------- 122
                                    D+KG RLS+PWLA QF +L   + VV         
Sbjct: 113 GEPVVGSLIYNWKQVCEDFLGVLPPDMKGQRLSLPWLAEQFTKLPLDADVVSIQRYARAY 172

Query: 123 -----------------------------DDAHGY------------------------- 136
                                        D+A  Y                         
Sbjct: 173 IMQLIGGCLFSDKSNTLVHCMFLPLLSDFDEAGTYSWGSACLAWLYRELCRASNAQSLEI 232

[Close]
BLAST of Clc11G09650 vs. NCBI nr
Match: KAA0054282.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa] >TYK14974.1 serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.0 bits (227), Expect = 6.3e-15
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI-----------------DL 62
           YL+   F+ V Q+GF+QLDWH ITALV+RWR ETHTFHMP                  D+
Sbjct: 273 YLEAAGFLEVSQVGFMQLDWHLITALVKRWRPETHTFHMPCGECMITLQDVALGVVPPDM 332

Query: 63  KGSRLSIPWLASQFKELSHVVDDAHGY 73
           KG RLS+PWLA QF+EL    D A  Y
Sbjct: 333 KGQRLSLPWLAEQFEELPPDADIAGTY 359

[Close]
BLAST of Clc11G09650 vs. ExPASy Swiss-Prot
Match: Q9LNG5 (Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana OX=3702 GN=MAIL3 PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 2.5e-06
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 11  GVEQIGFIQLDWHFITALVERWRLETHTFHMP 43
           GV ++ FIQLD+  ITALVERWR ETHTFH+P
Sbjct: 71  GVYKVAFIQLDYALITALVERWRPETHTFHLP 102

[Close]
BLAST of Clc11G09650 vs. ExPASy TrEMBL
Match: A0A5A7TSW1 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold201G00240 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 77/258 (29.84%), Postives = 91/258 (35.27%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+GV Q+GF+QLDWH ITALVERWR ETHTFHMP                    
Sbjct: 53  YLEAAGFLGVSQVGFMQLDWHLITALVERWRPETHTFHMPCGECTITLQDVAVQLGLPVD 112

Query: 63  -------------------------DLKGSRLSIPWLASQFKELSHVVD--DAHGYYFKY 122
                                    D+KG RLS+PWLA QF+EL    D      Y   Y
Sbjct: 113 GEPLTGSLRYNWMLICNDYLGVVPPDMKGQRLSLPWLAEQFEELPPDADIVSVQRYARAY 172

Query: 123 GVQL-------------------------------------------------------- 139
            +QL                                                        
Sbjct: 173 IMQLIGGFLFADKSNNLVHCMFLQFLFDFDQAGTYAWGAATLAWLYRELCRASNAQSLEI 232

[Close]
BLAST of Clc11G09650 vs. ExPASy TrEMBL
Match: A0A5D3BUF5 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G001440 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 77/258 (29.84%), Postives = 91/258 (35.27%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+GV Q+GF+QLDWH ITALVERWR ETHTFHMP                    
Sbjct: 135 YLEAAGFLGVSQVGFMQLDWHLITALVERWRPETHTFHMPCGECTITLQDVAVQLGLPVD 194

Query: 63  -------------------------DLKGSRLSIPWLASQFKELSHVVD--DAHGYYFKY 122
                                    D+KG RLS+PWLA QF+EL    D      Y   Y
Sbjct: 195 GEPLTGSLRYNWMLICNDYLGVVPPDMKGQRLSLPWLAEQFEELPPDADIVSVQRYARAY 254

Query: 123 GVQL-------------------------------------------------------- 139
            +QL                                                        
Sbjct: 255 IMQLIGGFLFADKSNNLVHCMFLQFLFDFDQAGTYAWGAATLAWLYRELCRASNAQSLEI 314

[Close]
BLAST of Clc11G09650 vs. ExPASy TrEMBL
Match: A0A5D3DNL9 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003100 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 1.2e-16
Identity = 77/258 (29.84%), Postives = 91/258 (35.27%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+GV Q+GF+QLDWH ITALVERWR ETHTFHMP                    
Sbjct: 101 YLEAAGFLGVSQVGFMQLDWHLITALVERWRPETHTFHMPCGECTITLQDVAVQLGLPVD 160

Query: 63  -------------------------DLKGSRLSIPWLASQFKELSHVVD--DAHGYYFKY 122
                                    D+KG RLS+PWLA QF+EL    D      Y   Y
Sbjct: 161 GEPLTGSLRYNWMLICNDYLGVVPPDMKGQRLSLPWLAEQFEELPPDADIVSVQRYARAY 220

Query: 123 GVQL-------------------------------------------------------- 139
            +QL                                                        
Sbjct: 221 IMQLIGGFLFADKSNNLVHCMFLQFLFDFDQAGTYAWGAATLAWLYRELCRASNAQSLEI 280

[Close]
BLAST of Clc11G09650 vs. ExPASy TrEMBL
Match: A0A5A7UEQ8 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold45G00050 PE=4 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 3.0e-15
Identity = 45/87 (51.72%), Postives = 53/87 (60.92%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI-----------------DL 62
           YL+   F+ V Q+GF+QLDWH ITALV+RWR ETHTFHMP                  D+
Sbjct: 273 YLEAAGFLEVSQVGFMQLDWHLITALVKRWRPETHTFHMPCGECMITLQDVALGVVPPDM 332

Query: 63  KGSRLSIPWLASQFKELSHVVDDAHGY 73
           KG RLS+PWLA QF+EL    D A  Y
Sbjct: 333 KGQRLSLPWLAEQFEELPPDADIAGTY 359

[Close]
BLAST of Clc11G09650 vs. ExPASy TrEMBL
Match: A0A5A7SNK7 (Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold848G00830 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 4.0e-15
Identity = 75/258 (29.07%), Postives = 89/258 (34.50%), Query Frame = 0 

Query: 3   YLQQVDFIGVEQIGFIQLDWHFITALVERWRLETHTFHMPI------------------- 62
           YL+   F+ V Q+GF+QLDWH ITALV+RWR ETHTFHMP                    
Sbjct: 251 YLEAAGFLRVSQVGFMQLDWHLITALVKRWRPETHTFHMPCGECTITLQDVAVQLGLPVD 310

Query: 63  -------------------------DLKGSRLSIPWLASQFKELSHVVD--DAHGYYFKY 122
                                    D+KG RLS+PWLA QF+EL    D      Y   Y
Sbjct: 311 GEPLTGSLRYNWMLICNDYLGVVPPDMKGQRLSLPWLAEQFEELPPDADIVSVQRYARAY 370

Query: 123 GVQL-------------------------------------------------------- 139
            +QL                                                        
Sbjct: 371 IMQLIGGFLFADKSNTLVHCMFLQFLFDFDQAGTYAWGAATLAWLYRELCRASNAQSLEI 430

[Close]
BLAST of Clc11G09650 vs. TAIR 10
Match: AT1G48120.1 (hydrolases;protein serine/threonine phosphatases )

HSP 1 Score: 53.9 bits (128), Expect = 1.8e-07
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = 0 

Query: 11  GVEQIGFIQLDWHFITALVERWRLETHTFHMP 43
           GV ++ FIQLD+  ITALVERWR ETHTFH+P
Sbjct: 71  GVYKVAFIQLDYALITALVERWRPETHTFHLP 102

The following BLAST results are available for this feature:
BLAST of Clc11G09650 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK03303.12.6e-1629.84serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
TYK25184.12.6e-1629.84serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
KAA0044309.12.6e-1629.84serine/threonine-protein phosphatase 7 long form-like protein isoform X1 [Cucumi... [more]
XP_011656076.14.8e-1530.50serine/threonine-protein phosphatase 7 long form homolog isoform X1 [Cucumis sat... [more]
KAA0054282.16.3e-1551.72serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
BLAST of Clc11G09650 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LNG52.5e-0671.88Serine/threonine-protein phosphatase 7 long form homolog OS=Arabidopsis thaliana... [more]
BLAST of Clc11G09650 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7TSW11.2e-1629.84Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5D3BUF51.2e-1629.84Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5D3DNL91.2e-1629.84Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
A0A5A7UEQ83.0e-1551.72Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7SNK74.0e-1529.07Serine/threonine-protein phosphatase 7 long form-like protein isoform X1 OS=Cucu... [more]
BLAST of Clc11G09650 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G48120.11.8e-0771.88hydrolases;protein serine/threonine phosphatases [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G09650.1Clc11G09650.1mRNA