Clc11G09030 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G09030
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionGlutamate-gated kainate-type ion channel receptor subunit GluR5
LocationClcChr11: 11097257 .. 11098075 (+)
RNA-Seq ExpressionClc11G09030
SyntenyClc11G09030
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAAAGGGCTCCAATTGCATAATATTATATCAAAGCTTCAAAACTTGGCTGAAACTTAGATTATTTTTTTTGTGGTATTAGGTAATGAAAGCCATAACATGAGGTACATGATCGGCAAGAATAATCAGCTTCCCTTTTGTCTGCCATTGTCGCACCTTTTCAACAACAAAACTAGTTGGCATTTTCCTTACATTACTCACCATGTCTCCTTCCATACCCTCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGCCAAAGAAGTTACCATCGCCGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGCAACGTTTAAGGTTCCAGGTGATACAAGGAAGTTGGGTGCAAAAAATTATCCAATGTGACCTTCGTAATCCGGTCGCTTCCTTCTCATAATCATTGGATATAGAATCCAAATGTAGTTTTTAATTTCTCTCTTCCGCCGGCCGGTTGCAGCCTCACCAATAATTTTTCGCCCCAAACGAAGGGAAAATTGAGGGACTGAAGGACGAGGGGCAACGTGGCGGTTTATGCGATGGCGTCCTACTGGTTCGGTGGCTTGAGCTCTGATGGGCTTTCATGGCGGATTGGTTA

mRNA sequence

AACAAAGGGCTCCAATTGCATAATATTATATCAAAGCTTCAAAACTTGGCTGAAACTTAGATTATTTTTTTTGTGGTATTAGGTAATGAAAGCCATAACATGAGGTACATGATCGGCAAGAATAATCAGCTTCCCTTTTGTCTGCCATTGTCGCACCTTTTCAACAACAAAACTAGTTGGCATTTTCCTTACATTACTCACCATGTCTCCTTCCATACCCTCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGCCAAAGAAGTTACCATCGCCGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGCAACGTTTAAGGTTCCAGGTGATACAAGGAAGTTGGGTGCAAAAAATTATCCAATGTGACCTTCGTAATCCGGTCGCTTCCTTCTCATAATCATTGGATATAGAATCCAAATGTAGTTTTTAATTTCTCTCTTCCGCCGGCCGGTTGCAGCCTCACCAATAATTTTTCGCCCCAAACGAAGGGAAAATTGAGGGACTGAAGGACGAGGGGCAACGTGGCGGTTTATGCGATGGCGTCCTACTGGTTCGGTGGCTTGAGCTCTGATGGGCTTTCATGGCGGATTGGTTA

Coding sequence (CDS)

ATGTCTCCTTCCATACCCTCTCAAAAACCTCCTCCTCCCTTTCAGACTTCATCATCAAACATTCTAAATTCAAATCCAAAATTCACTACCTCCCATCATATCACCATGTTACTTTCTTTCAACCTTAGATTCATTCTCTTCTTAACACTGCTTCTCACTCTCGCTTCCGTTTCCTCTGACGCGGCCAGAGTTCCCAGACCATATTGGGAGCAGATGTTGCCAAAGAAGTTACCATCGCCGTCGTCAGCGCCGTCCAAAGGGACCAACTCCATCGCTCCTTCCTCTTCTAAGGCTATGGAAGTTAGTCGGAATCTGCCCGCTAAGGACGGCAACGTTTAA

Protein sequence

MSPSIPSQKPPPPFQTSSSNILNSNPKFTTSHHITMLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAKDGNV
Homology
BLAST of Clc11G09030 vs. NCBI nr
Match: TYK23265.1 (glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo var. makuwa])

HSP 1 Score: 124.8 bits (312), Expect = 4.7e-25
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0

Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           MLL+FN RFILFLTL+L L S+SSDAARVP PYWEQMLPKKLPSPSSAPSKGTN++APSS
Sbjct: 1   MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 96  SKAMEVSRNLPAKDGNV 113
           SK M+V+ NLPAKDGNV
Sbjct: 61  SKPMKVNGNLPAKDGNV 77

BLAST of Clc11G09030 vs. NCBI nr
Match: KAE8646070.1 (hypothetical protein Csa_015561 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 6.2e-25
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0

Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           MLLSFN RFILFLTL+L L S+S+DAARVP PYWEQMLPKKLPSPSSAPSKGTN++APSS
Sbjct: 1   MLLSFNFRFILFLTLVLALTSISTDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 96  SKAMEVSRNLPAKDGNV 113
           SK M+V+ NLPAKDGNV
Sbjct: 61  SKPMKVNGNLPAKDGNV 77

BLAST of Clc11G09030 vs. NCBI nr
Match: KAG6607702.1 (hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 110.5 bits (275), Expect = 9.2e-21
Identity = 66/108 (61.11%), Postives = 76/108 (70.37%), Query Frame = 0

Query: 1   MSPSIPSQKPPPPFQTSSSNILNSNPKFTTSHHITMLLSFNLRFILFLTLLLTLASVSSD 60
           MSPSIPSQ PPP F + ++NI              M LSF  RFI  L L+L LAS+SS+
Sbjct: 1   MSPSIPSQNPPPSFHSYNTNI--------------MFLSFRPRFIFILLLVLALASMSSE 60

Query: 61  AARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPAK 109
           AARVP  YWEQMLPKKLP+PSSAPSKGTNS+A SS K ++V  NLPAK
Sbjct: 61  AARVPTKYWEQMLPKKLPTPSSAPSKGTNSVASSSFKTVKVDGNLPAK 94

BLAST of Clc11G09030 vs. NCBI nr
Match: EXC32449.1 (hypothetical protein L484_012616 [Morus notabilis])

HSP 1 Score: 75.5 bits (184), Expect = 3.3e-10
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 46  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRN 105
           LFLTL+  L  + S+A+R+P+  WEQMLPKKLPSP+S+PSKGTNS++  SSSK + V +N
Sbjct: 10  LFLTLIFALV-ILSEASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 106 LPAKDGNV 113
           LP+ DG V
Sbjct: 70  LPSSDGKV 76

BLAST of Clc11G09030 vs. NCBI nr
Match: KAF9855135.1 (hypothetical protein H0E87_006638 [Populus deltoides])

HSP 1 Score: 74.7 bits (182), Expect = 5.6e-10
Identity = 41/77 (53.25%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           ML+S+  + +LF   LL    +SSDA+R+P+ YWEQMLPKKLP+PSS+PSKGTNS++ S 
Sbjct: 1   MLVSWRQKCLLF--TLLAFVVLSSDASRLPKAYWEQMLPKKLPAPSSSPSKGTNSVSRSY 60

Query: 96  SKAMEVSRNLPAKDGNV 113
           S  ++   NL + DG V
Sbjct: 61  STTVKSDSNLSSSDGKV 75

BLAST of Clc11G09030 vs. ExPASy TrEMBL
Match: A0A5D3DI56 (Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold142G003180 PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.3e-25
Identity = 64/77 (83.12%), Postives = 71/77 (92.21%), Query Frame = 0

Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           MLL+FN RFILFLTL+L L S+SSDAARVP PYWEQMLPKKLPSPSSAPSKGTN++APSS
Sbjct: 1   MLLAFNFRFILFLTLILALTSISSDAARVPTPYWEQMLPKKLPSPSSAPSKGTNTVAPSS 60

Query: 96  SKAMEVSRNLPAKDGNV 113
           SK M+V+ NLPAKDGNV
Sbjct: 61  SKPMKVNGNLPAKDGNV 77

BLAST of Clc11G09030 vs. ExPASy TrEMBL
Match: A0A7N2MJW9 (Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 8.5e-12
Identity = 46/77 (59.74%), Postives = 61/77 (79.22%), Query Frame = 0

Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           ML S+  + +LF TLL  +  V S+A+R+P+ YWEQMLPKKLP PSS+PSKGTNS++ SS
Sbjct: 1   MLGSWRHKCLLF-TLLAFI--VLSEASRLPKEYWEQMLPKKLPCPSSSPSKGTNSLSKSS 60

Query: 96  SKAMEVSRNLPAKDGNV 113
           SKA++ +RNLP+ DG V
Sbjct: 61  SKALKANRNLPSSDGKV 74

BLAST of Clc11G09030 vs. ExPASy TrEMBL
Match: W9S9P5 (Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-10
Identity = 41/68 (60.29%), Postives = 54/68 (79.41%), Query Frame = 0

Query: 46  LFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIA-PSSSKAMEVSRN 105
           LFLTL+  L  + S+A+R+P+  WEQMLPKKLPSP+S+PSKGTNS++  SSSK + V +N
Sbjct: 10  LFLTLIFALV-ILSEASRLPKSSWEQMLPKKLPSPNSSPSKGTNSVSTSSSSKEVNVDKN 69

Query: 106 LPAKDGNV 113
           LP+ DG V
Sbjct: 70  LPSSDGKV 76

BLAST of Clc11G09030 vs. ExPASy TrEMBL
Match: A0A803PR73 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-10
Identity = 41/77 (53.25%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 36  MLLSFNLRFILFLTLLLTLASVSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSS 95
           ML S+  ++ LF  LL+    + S+A+R+P+ Y++QM+PKKLPSPSS+PSKGTNS+  SS
Sbjct: 37  MLGSWRQKYCLFFILLIAFIDL-SEASRLPKEYFKQMMPKKLPSPSSSPSKGTNSVTTSS 96

Query: 96  SKAMEVSRNLPAKDGNV 113
           SKA++   NLP+ DG V
Sbjct: 97  SKAVKADANLPSFDGKV 112

BLAST of Clc11G09030 vs. ExPASy TrEMBL
Match: A0A6J5Y4V2 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS47413 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 3.6e-10
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 0

Query: 50  LLLTLAS--VSSDAARVPRPYWEQMLPKKLPSPSSAPSKGTNSIAPSSSKAMEVSRNLPA 109
           LL TL +  V S+A+R+P+  W+QMLPKKLP+PSS+PSKGTNS   SSSK++E  R LP+
Sbjct: 10  LLFTLVAFIVLSEASRLPKDCWQQMLPKKLPTPSSSPSKGTNSATKSSSKSLEAHRKLPS 69

Query: 110 KDGNV 113
            DG V
Sbjct: 70  SDGKV 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK23265.14.7e-2583.12glutamate-gated kainate-type ion channel receptor subunit GluR5 [Cucumis melo va... [more]
KAE8646070.16.2e-2583.12hypothetical protein Csa_015561 [Cucumis sativus][more]
KAG6607702.19.2e-2161.11hypothetical protein SDJN03_01044, partial [Cucurbita argyrosperma subsp. sorori... [more]
EXC32449.13.3e-1060.29hypothetical protein L484_012616 [Morus notabilis][more]
KAF9855135.15.6e-1053.25hypothetical protein H0E87_006638 [Populus deltoides][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DI562.3e-2583.12Glutamate-gated kainate-type ion channel receptor subunit GluR5 OS=Cucumis melo ... [more]
A0A7N2MJW98.5e-1259.74Uncharacterized protein OS=Quercus lobata OX=97700 PE=4 SV=1[more]
W9S9P51.6e-1060.29Uncharacterized protein OS=Morus notabilis OX=981085 GN=L484_012616 PE=4 SV=1[more]
A0A803PR732.1e-1053.25Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
A0A6J5Y4V23.6e-1060.00Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS47413 PE=4 S... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..101
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..112
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G09030.1Clc11G09030.1mRNA