Clc11G08050 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGTTGAATCCATGGGCAGGCAAGAGACAACCTGGCGGGGCCCACACCTTAATTGTTCTATACCTTGCAGGAGAAGGGTTAAAGTACCCATTCGGGGATTAAGTGGAATATTAGCCCGGAAATGCGACTCTAACAGCTAGGTTTCGAGAGGGCTATATCGATCTCGGAAACAGGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGTCTGGAGAAAGTATAAAGTAGGAGGGTTTTAAATGCGAGATCTAAAAACATATCTCTCCGTGGCACCGGTAGTAAGTACTATATGGTTCAGGGCGTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTTCATTCTAGTTATTGATTTGCGCGTCGTTCCAACAACCGGCGGGGAGCACCTCAGTATACGATCGTGCGCAGTAACTGAGAGTCCTATTACACCTAAGGCCAACTTCAATTCACCAAACCAAGGTTCATCTCGTGTAGTGATTGTGGACTCGTGAAAGGGTCACCACTACTTCGGATCTCCCCCCTAATCTTAGATAGGTCGTCTGAGGGTTCGCCGCGGTTCATTGCTGTGCTTACACACTAGGCTACCCTTCTCCGAAAGCTCCGCGGGACCACCTACCACTAGTCTTCGGCCGGAGGGGTTTATTGCACAAAAACGCCGGGACGCAGGCCCCCGAAGAGGGAAGCCCAACGAATGTCAGATGCAAAGCCCCGCACCTCATTAAGATCATATTGGCATACTCCCCAAAAAAAAAAAAGAGCAGACCCCATTGAAGACGAGAGTGAGGTACAACAAGGCCATTTCTGTCCACCGCCCTTCTCACAGAGCCGGCTCATGGCTTTCGAAGTAAAAATCACCCTTAAAGTACACCCACACCCCTATACCTCTTTAAAAGGCTCTGATAGTCGAATTTTTTGTTCTTTCTTATCTTAAAGGGATCGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACCCACTACTCCCAAGTGGGGTTCATCGGCACTCCCACTCTGGGACTAGGGAGATCCCCGTCACATCCTGTTTCCGTGCCTCTCCTCCTTCCCCCCCCTAAACAGATTAGAAAAGAAAAAAGCATATCTTCCAATTCCTTCCCGATACCTCCCAAGGAAAATTCCGAATTGGATCCAAAATTGACGGGTTAAAGTTGTGCTCAAGCTCGATAGGTAAGAAATTAAAACACTCCCTTCTTTCCTTTTTTGTTATTTAAGCGAAAATGATGAAAACCAGATCGAACTCTAAAGTCAAGCCTTTCATTCCTCTTATTCAAATGCTTTCCCTTGGCTTCGGTGCTAGCTAGGACTGGTAGCATGGTCTTCTCTTAGGCTTTCTCTTCCATCAAATTGAGTATGATTGTATGTGTGATAGCATCTACTATACCAGGAATATCAATGAACCCGATTATTGAAATTGCTCAGGATACCCTTTTTTAGAGTCTAAGAGTTTTATAAAACGTTCTTGATGGAAAAAAATGTGAATGAAAGATCCCACTGAATTGAATTGGGTCCATGAATCTAAGAAATAGTGAGAATTCTTGATCTCTCTCAATTCGAAAATCCAGGATTTGAATTGATGTCCTTTCATTGAGTCCGTTATTCCCAATAATACGGCTCGGTAACAGATCGCTTCTTCCAAAGCACGCCCTGTTCGTTCCGCTCGCAACAATCCAATGAGTTCTCCAGGTGAAAAAACATTCGACATTCCATCCTCTGAAACCAACACTTTTGATGTTATTTGACGTACAATAATTTCGACAAGTCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGTTCGTTATCGATTAGGTATCAGTGGGAACATAAAGATCAAAGAGTTAACTAAGTATCAGATCGACCAAATTGAACAAATCTCTCTCCTGTGAAACTCCTCCTTGTTCTATGATTGATCTGACCATTTTCTTTAGGCGGAAGCTGAAAAGAGATTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATACCGTTCCGACTTCCAAAGGCGATCCTAAGGGAAGAAGAATGAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGGAAGCTCCACCGAAAGAAGAAGAGGAAATAAGACTCGAGTTTCTGGAAATCTTTCAAGAGGGAGTTCCATAG ATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGTTGAATCCATGGGCAGGCAAGAGACAACCTGGCGGGGCCCACACCTTAATTGTTCTATACCTTGCAGGAGAAGGGTTAAAGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGGCGTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTTCATTCTAGTTATTGATTTGCGCGTCGTTCCAACAACCGGCGGGGAGCACCTCAGTATACGATCGTGCGCAGTAACTGAGAGTCCTATTACACCTAAGGCCAACTTCAATTCACCAAACCAAGGCTACCCTTCTCCGAAAGCTCCGCGGGACCACCTACCACTAGTCTTCGGCCGGAGGGGTTTATTGCACAAAAACGCCGGGACGCAGGCCCCCGAAGAGGGAAGCCCAACGAATACGAGAGTGAGGTACAACAAGGCCATTTCTGTCCACCGCCCTTCTCACAGAGCCGGCTCATGGCTTTCGAAGGATCGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACCCACTACTCCCAAGTGGGGTTCATCGGCACTCCCACTCTGGGACTAGGGAGATCCCCGTCACATCCTGTTTCCGTGCCTCTCCTCCTTCCCCCCCCTAAACAGATTAGAAAAGAAAAAAGCATATCTTCCAATTCCTTCCCGATACCTCCCAAGGAAAATTCCGAATTGGATCCAAAATTGACGGATCGCTTCTTCCAAAGCACGCCCTGTTCGTTCCGCTCGCAACAATCCAATGAGTTCTCCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGCGGAAGCTGAAAAGAGATTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATACCGTTCCGACTTCCAAAGGCGATCCTAAGGGAAGAAGAATGAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGGAAGCTCCACCGAAAGAAGAAGAGGAAATAAGACTCGAGTTTCTGGAAATCTTTCAAGAGGGAGTTCCATAG ATGCTTCGGGGAGTTGAAAATAAGCGTAGATCCGGAGATTCCCGAATAGGTCAACCTTTCAAACTGCTGTTGAATCCATGGGCAGGCAAGAGACAACCTGGCGGGGCCCACACCTTAATTGTTCTATACCTTGCAGGAGAAGGGTTAAAGCCTCAATGGGAAAATAAAACGGAGCACCTAACAACGTATCTTCACAGACCAAGAACTACGAGATCGCCCCTTTCATTCTGGGGTGACGGAGGGATCGTACCATTCGAGCCTTTTTTTTTCATGCTTTTCCCGGAGGGCGTTAGCGGGTCTATTAATCGAGATCAATCGTTTATTCCCGGATGCGTTGGTATTCCCATTTTTTTCATTCTAGTTATTGATTTGCGCGTCGTTCCAACAACCGGCGGGGAGCACCTCAGTATACGATCGTGCGCAGTAACTGAGAGTCCTATTACACCTAAGGCCAACTTCAATTCACCAAACCAAGGCTACCCTTCTCCGAAAGCTCCGCGGGACCACCTACCACTAGTCTTCGGCCGGAGGGGTTTATTGCACAAAAACGCCGGGACGCAGGCCCCCGAAGAGGGAAGCCCAACGAATACGAGAGTGAGGTACAACAAGGCCATTTCTGTCCACCGCCCTTCTCACAGAGCCGGCTCATGGCTTTCGAAGGATCGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACCCACTACTCCCAAGTGGGGTTCATCGGCACTCCCACTCTGGGACTAGGGAGATCCCCGTCACATCCTGTTTCCGTGCCTCTCCTCCTTCCCCCCCCTAAACAGATTAGAAAAGAAAAAAGCATATCTTCCAATTCCTTCCCGATACCTCCCAAGGAAAATTCCGAATTGGATCCAAAATTGACGGATCGCTTCTTCCAAAGCACGCCCTGTTCGTTCCGCTCGCAACAATCCAATGAGTTCTCCAGAATTGCCTCAACCAAAATTGATGGAATTGGACCTAAAAAAGCCATTCAGGCGGAAGCTGAAAAGAGATTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATACCGTTCCGACTTCCAAAGGCGATCCTAAGGGAAGAAGAATGAAAGGGATAAGGCTGCAAGAAGAACCTAGAGAGGAAGCTCCACCGAAAGAAGAAGAGGAAATAAGACTCGAGTTTCTGGAAATCTTTCAAGAGGGAGTTCCATAG MLRGVENKRRSGDSRIGQPFKLLLNPWAGKRQPGGAHTLIVLYLAGEGLKPQWENKTEHLTTYLHRPRTTRSPLSFWGDGGIVPFEPFFFMLFPEGVSGSINRDQSFIPGCVGIPIFFILVIDLRVVPTTGGEHLSIRSCAVTESPITPKANFNSPNQGYPSPKAPRDHLPLVFGRRGLLHKNAGTQAPEEGSPTNTRVRYNKAISVHRPSHRAGSWLSKDRIDPLQSLWEKTHYSQVGFIGTPTLGLGRSPSHPVSVPLLLPPPKQIRKEKSISSNSFPIPPKENSELDPKLTDRFFQSTPCSFRSQQSNEFSRIASTKIDGIGPKKAIQAEAEKRFEQQSEKTNAAQKNMFLKKNKHKVSAEGPEKHTVPTSKGDPKGRRMKGIRLQEEPREEAPPKEEEEIRLEFLEIFQEGVP Homology
BLAST of Clc11G08050 vs. NCBI nr
Match: YP_009493632.1 (Ycf68 [Eucommia ulmoides] >YP_009493646.1 Ycf68 [Eucommia ulmoides] >AWN56554.1 Ycf68 [Eucommia ulmoides] >AWN56568.1 Ycf68 [Eucommia ulmoides] >AZT79317.1 Ycf68 [Eucommia ulmoides] >AZT79331.1 Ycf68 [Eucommia ulmoides]) HSP 1 Score: 98.6 bits (244), Expect = 1.4e-16 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0
BLAST of Clc11G08050 vs. NCBI nr
Match: ANP25546.1 (Ycf68 [Eucommia ulmoides] >ANP25560.1 Ycf68 [Eucommia ulmoides]) HSP 1 Score: 98.6 bits (244), Expect = 1.4e-16 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0
BLAST of Clc11G08050 vs. NCBI nr
Match: TYH79861.1 (hypothetical protein ES332_D03G093200v1 [Gossypium tomentosum]) HSP 1 Score: 97.4 bits (241), Expect = 3.0e-16 Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 0
BLAST of Clc11G08050 vs. NCBI nr
Match: AGZ19190.1 (hypothetical chloroplast RF68 [Camellia sinensis]) HSP 1 Score: 94.0 bits (232), Expect = 3.3e-15 Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0
BLAST of Clc11G08050 vs. NCBI nr
Match: KAF4348549.1 (hypothetical protein F8388_000228 [Cannabis sativa]) HSP 1 Score: 94.0 bits (232), Expect = 3.3e-15 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy Swiss-Prot
Match: P03938 (Uncharacterized protein ycf68 OS=Zea mays OX=4577 GN=ycf68 PE=3 SV=2) HSP 1 Score: 81.3 bits (199), Expect = 2.9e-14 Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy Swiss-Prot
Match: Q6L3C9 (Uncharacterized protein ycf68 OS=Saccharum hybrid OX=15819 GN=ycf68-1 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.9e-14 Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy Swiss-Prot
Match: Q6ENQ5 (Uncharacterized protein ycf68 OS=Saccharum officinarum OX=4547 GN=ycf68-1 PE=3 SV=1) HSP 1 Score: 81.3 bits (199), Expect = 2.9e-14 Identity = 39/55 (70.91%), Postives = 43/55 (78.18%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy Swiss-Prot
Match: Q6ENB7 (Uncharacterized protein ycf68 OS=Oryza nivara OX=4536 GN=ycf68-1 PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06 Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy Swiss-Prot
Match: P0C304 (Uncharacterized protein ycf68 OS=Oryza sativa OX=4530 GN=ycf68-1 PE=3 SV=1) HSP 1 Score: 54.3 bits (129), Expect = 3.8e-06 Identity = 28/62 (45.16%), Postives = 37/62 (59.68%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy TrEMBL
Match: A0A2U8XDR1 (Uncharacterized protein ycf68 OS=Eucommia ulmoides OX=4392 GN=ycf68 PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 6.5e-17 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy TrEMBL
Match: A0A1B0ZD71 (Uncharacterized protein ycf68 OS=Eucommia ulmoides OX=4392 GN=ycf68 PE=3 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 6.5e-17 Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy TrEMBL
Match: A0A5D2LK82 (Uncharacterized protein ycf68 OS=Gossypium tomentosum OX=34277 GN=ES332_D03G093200v1 PE=3 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 1.5e-16 Identity = 49/85 (57.65%), Postives = 58/85 (68.24%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy TrEMBL
Match: U5U7J0 (Uncharacterized protein ycf68 OS=Camellia sinensis OX=4442 GN=ycf68 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.6e-15 Identity = 45/66 (68.18%), Postives = 50/66 (75.76%), Query Frame = 0
BLAST of Clc11G08050 vs. ExPASy TrEMBL
Match: A0A7J6DSE9 (Uncharacterized protein ycf68 OS=Cannabis sativa OX=3483 GN=F8388_000228 PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 1.6e-15 Identity = 39/42 (92.86%), Postives = 41/42 (97.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|