Clc11G07650 (gene) Watermelon (cordophanus) v2

Overview
NameClc11G07650
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein Ycf2
LocationClcChr11: 7716262 .. 7728323 (-)
RNA-Seq ExpressionClc11G07650
SyntenyClc11G07650
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAATCATTCGCTTCCGGAAGAAATCGAAGAATTTCTCGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCACCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAGCGCACCAAGCAAGAAAACGGTGGATTGACTGGCGAACTCGTGCAATCAACCAAAAGAGCCTTCGCCTCTCGAGGTTTTAATTTTTTCACAGTAGTACCTTGATTGACTTCTGCTTTACTAATGACTAAATCTCTTTCGTTGAAACCCATATTGTGACTAGCATTTGCTGCTGCCGAATAAACCAATTTTAAAATTGGATAACATGCTCGATAAGGCATGAGTTCGAGTATCAATAATTATTACGGAGAACCCGCATGGCCCAATGATCTTTTATATATTTTTCCAGTAGTAATTCTAGGTACTATTGCATGTAACGTGGGCTTAGCGGTCCTAGAACCATCAATGATTGGTGAACCCGCAGATCCATTTACTTGCATGCGTGCTCCTCCAGAAGCACACGCTAAAATAAGAGGTAAAAATTGATTGGTAGCATACTCGATCAAACGGGTGATTTTCTCGCCTACTACAGATCCCATACTACCCCCCATAAACTGAAAATCCATAACCCCAATTGCTACGGGCTATTTCACCTCCAGTCCACAGAGATTCATTTCACCGATGCGAAGAAGTCCTCTCGAGACCGTTCTGTAAGTCACGCCCTCTGGTTGGTACGAAAGACGTTCGGAGGTGAATTCGACCTTTGATTGAATCTATTATCAGTGCTAGCAACCGTAGAACCAATGAAAGGCGCCAGTTGTTGCGCTCGTTCAGGTTCCTACTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGGTAACCTGAGGTCGGGCTAACTAATGAAAGTGCAACGCCCGGTTCAGCGATACATTCATCATATTTTCGAGGATGCTTTTCACTCACTCGCTTGAGTCGGACTCAATCACTCTTTTTGTTTGGAGGATCATTCGTTCTTCACTCTCTTGTTGCTATTACCCGCAAGGAGTGCTGCAACCAAGGTGCATATTATCATATAGAAACAAGCGAAGCGTAGCGATTCGTACTACCGGAAAAGTTTCGATATAGGAAGGGGCCTTTTCTTGCTCGTTAGCGCTTTAGTTTTCAATAAGGACGTTTAGGCTTGACTAAGAGTCTCGTTAGGGCGGCTGCTCGTTTAGTATTGCTTTGGCTTCGGCTCATCCGCGAGAAAAGGCATATAAATTGTTTACTTGAGGGGATAATAGAAAGAGAATGGCTTTCTTGGAATTTCTTCGGCCGGTTGGTTGGTAGATAACTAAATCCCTATCTCCCGGTGCCCCGACTGCTTCTTTCCTAGGAGCGATTCCTACCAGGAGTTGCTAAGAGTAAAATTCGGGAAAAAGAACCCATTGTATGGGAAATACTTCAGGAAGTTATGCAGGGGCATCCCGTATTGCTAAATAGAGCGCCTACTCTGCATAGATACAGATTCATCCATCTTTCTATTCATATATCTTACTAAAAAAATGGATTTCTTAAGTTGCGTGAAGCCCCAAATCCTTGATTTGGCCAGGAAAGACTGCACTGCTTTGGGCCCAAGGAAGCGAAGGGAATGAGCTCGGCTGCTTCTTCTCCACACTTTTTTTTATCCGTGTCCGTTCCGCATGCGCTTCGCGCGCGCGATTTCGATCACCTAGCAGGCCTTTTATTTGGTAGGTAACATCGCCAAAGCGTATCATCAGATTTGACTACGAAGGAAGGCACTCGAAGTGAGACGGCACCGTCTTGTGCAACGCAACGATAATTGGCCCTCTATCATCTTCGAGACGGGCGGCCGCTCAACTGTTCGAGCGTTTTCCTTTCTCCTATTATTAGAGTGGGGTGGTTGGTTCCGATTCGACAAGGGTCGAATACCTGGTCGAAGGTCCAGTACAGTAGGTAGCAGGCGTTTTCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCACCATCCTTGCAGCTACGTACGTTGACCTTGACTTAACAGATTCATCCAATTGAACCCACACTAAAAGGAGGACCACAAGCTCGGGGGCGAAAATCAATACACATTCAAGGAGTTGTACACGAGTTTGGTAAAGCATTCACCTGTCGGTTGTACATCGACCTGTCGGGAAACTCGAAACTCTCCCGCAAGCGTCCTTCTTAGGTCGGCATTTGGCTTTGGCCTTGCTTGTTCGGTTTTGGCTTCTTGGGTTCCTTCTGCCATCCTACCCAATGAATTATTAGGATTCGTTTTCAATAGAATATTATGTATTCACGGGTTCCCTCGTTCCCATCGCCTCTCGATTAATGGTTAGGTCTTAATTCTACAATGGAGCCCGTAATAAAATTTGTTTTTGAGTCAATCTTCTCAGTCTTTATTGTCTCGGGGCTCTTGGCTTTTTTGTTCTATGAACAGATTCATCTAATTATGAATCCATCAGTCTTAATGCTTTATTACACTACCTTTTATGAGATGACCCATAGACCTTACATATTACATATTGGAATCATATATCATTCATATTCTTTTTCTCTCTTTCTTTCACCCTTCCATTTATCCGCATACTTTTATTGCTTCACAACTCATAATCGGATTGTTTTTTTTTTTTATGCAAAAAAGATTTCAGTTGCTACAATGATATGACCAATATAACATATCTTGACTGGTTGGTTTTTTAGATCCAGATAATGCGAAGCGATGAGTTGGTTATTAGTTTTATAATTATTAGTTCAGATTATGTATGAGCTGATCCTTCTTTTTGGTTTTAATCCTAACCTTAAAAAAACCGACGAGTCGCACACTAAGCATAGCAATTATCTCAAATGATTAATTTCATTTTTATTTAACCTTATAGAATTGCTCATTTTTTATTTAAACGAAAAAGACTGATTTGTCATTTCTTGGTCGATCATTGACTAAAACGTAAACACAAGTTGAGTAAGGGCTTATTATTGTTCGTCTACAAATATCCAAATTTTTATACCTAATACCCCATAGATAGTTCGAACTGGATAGCAACAATAATCAATTTTAGCTCGAATGGTTTGTAGAGGAACCCTTCCGCTAGTTTCTTTGATCCCACTCGGTGTTCCTTTTCCATTTGCTTCTAATAGTTCAACCTATCCAGAAAAATTGTCGGCCTATGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTCGATATACGATTTTATCTTGTTTCACTTACCCATATTTTACCATTTCTTCGGAATTGTCCGATTATAGCCCGACGCGCTGCTTCAATGGCTCGATATGAAAGACGACCAGCAAGCAGCCCCTTGTATAGGGTTCCAAACCAATCAACCTAATAATATAATAAGAAAGGAGGGGCTTCCCGTTTTGTTTTAGCGCGCAGTGTACTAGTGAATAGGAAAAGCGGATTGAGATTACTAATGACGGATGGAGGTTGCCTATTATGAACTATTTTCCCTCAGAACAAGAATAAAAGAGGCTTGCAGGTCTAGTCGCATACCCTGAGGACGGACAAATTTCCGATAGCGAATTACTTGACTCAATGGATGGAGGGAGGGCCCCCCAACTTAAGCACGAAATCAATGTTGAGTCAACAATCATCGAGAGGGGCACCACCAAGCGAGATCGAGACCAGCACCTTGGCCTTGGATAGGGTTCCCTGCCTGCGCCGAATTCACCGCCGTATGGCTGACCGGGGATTACTAGCGATTCCGGCTTCATGCAGGCGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTCACCCTCGCGGGATCACGACCCTTTGTCCCGGCCATTGTAGCACGTGTGTCGCTTGGAATGGAAGAACTTCCCCACCTCACTACTAAACCGTAGCTTTCTACCTTTTGATTCTGGTAATTTTGTCTCCATCATACAAGACCCGTGCCACTTTCACCTGTAGTTGCAGCAGCCGTTTTTCTTTATTATCTGCAGTGAAGATAATTGGAAGTACGCTTAGTCTTAGTATCCAAGGATTGACCTTAAATACAAGAACAAACACTCTTTTTTTACTATGGTCTTATGTCGAAAGAAGAGAGCTGACCCTAAACAAAGAGAGGTTAACTAATACGCTCGACCATAGGGAGAGGAGAGGAGCAGAGCTCGCTACTGTAATAATTTCAAATGTCTTTTTATACACTGGCGCGGATGATTGCCCCTAAGGCACCGATGGACCAACACCTTCGTCTATCACCCGAATTTCTTGATTCACGACGTCGAGTATTTGCACTTTCGATTTCGTGACTCGACCTGTAGACGGTGATACCGCCACCTTCGGAGACGTGATCCTCTCTTATTCACTTGTGCCGGTGCTCATGAAAAGCTTGGAGGTTGCAACAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTGGTAATGGTTGGAGCAGCAAACTCGGATTCGGCAAGAATCTCATTTTTTGGTTGTACGAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTCAAGACGCAGTAGGGCGCAAGCGGCCCTTTCGCGACTCAAACTGCCGATACGCTTTCCGGCTCGGAACGACCGACTCAAACGGGCGGGGGCTCTCTATTTGCTTGCAATGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAGGGCGCCCTTTGCCCCACACTGAAGAAAAAGTACATAAGGGGGGGACCAAGAATTGGAAATTGAATTGACAAGGTAAAGAACTCTACAATATATAGAATATATGGAATACCACCGAAACGTTTCTTTTTTTGAATTGTGCATTCAATTAATTTTAATCAAATAAGTCGGATCTTGTCCGAGACAAATTCATGATTTACTAGAAAAAAAAAAGATTCTCACTAGTTATAAGATCAGATAAGTCGTACATACAGTCTGAAAGTTGAGTCCAATATTGAAATTCTTCTATAGCTGTGATAAATCTGGATCACTCTCATTTGACTATTTGTCCCTCTGTTAGAGGTGTTCCAGAAATGTCTGCGATCGAGTAAATAGCTCGACGAACGAATGGATCGGATCGAATTGGAAAATGGAAAGATTTGTACAAGTTATACCTTTCGTCACCACTTTGTGGAAAATCGTTAGGTATGAATATGTTAGATACCTGTGACTCGATTGGTGAAATAGTATCTCTCTCCAAAAAAGCATGTTTTTTTTTACCGCCGCACAAAGAAAATATTTTGTTGCGAATGAACAAGATATTGAGGAATTGTCCATACGTAAAATCATAATTATTGATACGGGCCTTTTCCACATAATCCACATAAAAAGGGAATCTTTTGTTACAATAGAAGCAGAAGTGATGTGGATTATTCAAGAATCGAAGTCGAGTACTTTCAACGCTCATGCTATTTGAAAGAGCTTTCAACATGGAGTGGAGACTCCATAACGTACACAAAGAGTCTTCGTTCCCTCTTAAGTAGATAGGCTGGTCTATTTCGCCTTCGCTACAACCAGGAAGCTTTGACGGAAGTCCCATATCTGAGTCGCCGGAGATGCAAGTCTCCCATTGGTTTGAAGAAAACAAGAAATGGGCGGGATCTTTCATCGATAGTTATTCATTTGAGTGTTCCCGAAGGCACCCCTCTCTTTCAAGAGGATTCGCGGCATGTCAAGCCCTGGTAAGGTTCTTCGCTTTGCATCGAATTAAACCACATGCTCCACCGCTTGTGCGGGCCCCCGTCAATTCCTTTGAGTTTCATTCTTGCGAACGAAAGCCAGAATCTTTCAGAAAATGGATTCCTATTCGAAGAGTGCATAACCGCATGGATAAGCTCACACTAACCCGTCAATTTTGGATCCAATTCGGAATTTTCCTTGGGAGGTATCGGGAAGGAATTGGAATGTAATAATATCGATTCATACAGATACAGAAGAAAAGGTTCTCTATTGATTCAAACACTGTACCCGCGGGATAGGGATAGAGAAAGAGGAAAAAAACGAAGATTTCACATAGTACTTTTGATCGAAAAATCAATCTGATTTATTTCGTACCTCTCGCTCAATGAAAAAATGGGTCAGATTCTACAGGATCAAACCAGCGAAACAGCGGATCAACTGGTTCACTTTTCTCTTTTTTATCTTTCGATGTTTTCGTTAATAAAGTGGATTCTTCTTAGTCTTAGAAAGAAAGGTACGATTCTATCGTGAAGAGGCCGTCCTCTGTCCCTGAAGATCTATTTAACGATCTCATTAAGGTATGTCTAGATTTGGTTGAAAGGTATGTCCCCTGGGCTCTTAAGATCCTGTTCATGGATTAACGAAAATGTGCAAAAGCTCTATTTGCCTCTGCCATTCTATGAGTCTCTTCCTTTTTACGTATGGCATCGCCACTCCCTTTGGCAGCATCCACTAATTCAAAACTTAATTTGAAAGCCATATTTCGACCCGGACGTTTTCGGGATGCCCTCGATGGATAGACTCCTTTAACCATGACATATTTGCTTCTTTGAACATAATTTCATTTCTTTCTGAAAGAAAAAGGAATGGTTAATTACACAAAAGAAATAAGTTTTTTTTTTTTTTTTTCACGAGGTAGAACGAAAAATTCCTATTTATTACTGAATCGACCATAGACCAATTCCCCTTTTATTTGGGATGGGAGTATTAACTACACCCAAAATTCTGGCCCAAAAATTGGATAGGGGTCAAGACGCAGTCGGGCGCCGGCGGCTGACTCAAGTGCCCCCCGAACCGCGCGAAATGGTTGCCTATTACACGGCTCCTGGGGTGGGGGTACCTATTATTCGTCGGCGGTCCGGCGCACCCCTACTTAAAGGATGCTGCTTAATTACGAAGGAAATTCTTTCTTCATCGTGAGAGTTCCCTTTCGTTAAGTGCATCGAGCCAGGAGTGGACATCATCATCATCTGCAGACAAATCCAGATCCTCTTTCTTCATTAGCTTAGCTAAAGTGGAATAGTATGACAGGCTTTCCGGAAAATGAAACGAAACCCGCTTGATCGATATGAAAAACATGCGCTCAAAAAGACCTCCTACACCCCCCTCGCCAAGTGATCGAGTTTAGTCAGAATTTGCTCTAGAAGTTGCTCCCGCTCCGGACTGACTTCCTGGAAAGATAGGATTGGGCAATTCCGCCGGTTCTGGAGCTGACCTTCTTATTAGAGAAAGGGGAAAGGGCTTTTTTTTTATAGAGGTTGAGTAAGGGGGGCGGAGCTTGAGGCTTCTCAGCCGCAGGAACAGGGAACGAATCCTCCAAAAATGGAATGAGTTCGCAATGACTACCACAATCAAGCCGCCCCCTCATCACTTACCGCTATTTTTTCTTTGGGGGAGTTCACAATGTTTTTTCTGGCGTTCCTTTCTATTGATGAAGAGGTGACCTCGTGCTCTTCAAGAAATGAAGGCAAAGGCCCCCCCGAGCTCGAGTTTACCGGGGATCTTAGAGGGGCACCCAATCAAGGCCGCCACCCTCGCCCTTTAGAGATAGGGGCGCAACAAAAAGTCTTCAAAAAAAGGCGCCGGAGGCCTCAAACTCATCCGAGTTGGAGAATGAAAAAAAAAAATTTCTCAACAAGAATGCATCAACAAAACTGCCCTTCCATATAGATCGTCGTCGCATGAACTTTGTCAAGAAATTCCGGGACTTCCTATTGATCTTGATTAGTTCCAGCTTGTTGAGAGTTCTATTTTCTTTCTAGACCGGACCCTTTTTTAGACCGTCTCCTGAAACACCTGCTTATCCCGCATGTGCTTTCGGAGCCCCCCACTCATTCAATCACTTGCTTGTGATTGCAGCCATTCCCCAAAAAGGGAGAGACGAGGGAATCGTCTGCTCCTGTTTATGTGACGAATCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCAAGATCTGATCTCCATTACGTGGTACGATATATCTATCGATCCAAAGAACTGACTTTCAGTTGTAAGTCATCCATTCTGCTCCTATCTAAAGTGATGCTAGGTTGTTTCACCTTCACCCTTCACAAAGACAGGTGCAGGTGCGCTTCGCTCGGCCACATGATGAACATGTTTTGAGCTAACTGCATGTCGAGCGCTTAAGCGGAGCTTGTGGTCACTCGTTCCTCGCTTGTTCCAATCCTAGTAAAGAGCCTCAGATCCGATTCTACACTACATATGATATTCCATTCCGGCCCTTACTAGCTCTTCGCTTGGTTGTACAAAGAGCATGCCCGAGGGGGCTACTACGCTCACCGCGCACTTGCATCACCACCAGAGCTTCGCTACCGCTTCGCCCAGCTCCTACGCCTACCACGAACGTCGAATCATCACGTGGCTGCTAAAGCAAGCTAAGCTTCACACGGCCGCCAAAAGACCCTCTCACGGCCGAAGGATCCGCAACACGTTGGAGAGCTTTTAGATCCAGCCCTAAAACGCCCATTCTCAACGAGTTCCGAAGTGATCCTCATTCTCACCGCTGCCTTCTTAAGCCGAAAGAAAGCCGGGCAAGAATCTCGGTAGTACGAAGGGGAAGCAGAATCGTATCTGGCAACTCAAGATACCATTTCTGGGCCCAAAGACGATCCTATTTTTTTCTTATATAGATAGAAATTGATCTTATCCTCTGTTATCTTCTGTTTTGGAATCAAAGATATTTTTAACCGGCTCATATGAAGTGACTTGGAATAAACGTTTCTCTGTGGAGAAGGGGAAATATCAATTTTTTCCTATAGAACGTCTACAAACAAGAGGATTTAATCGGAAATATCGACAGATTCCTATGTGTGGAGTCCAAATAAATATGAAAATAAAAAAGATCCACTGTTCTAATTTAATCCTTATCGAATTTGAATATCAGAATAGTGGATATAGTCATGATTCAACGGGTTAGGTCCACTTACTTTTTTTTTTTTTTTTTGTCTTTTCGGCTTTTTTTTTAAAGTGTCATCGGATTCCAGTTTTGCACTAAGATTCAGGGGGGAATATGTCTCATCAGCTTTCTCTCAGTTTATAGCCACTCATGGAATTGATTATAGCATTATCATTAAAAGCAAGATATAGCTAACGTTCCTTACGTGCTATTGGAGCCATCATCACTGGGGCGTTCGCTAAGGTCTCCTTGATTTTCACAAAGGCTTGTCGATGGACCTCTTCCCATTTGTACTCTACCTTTTTCTTTAGCAATTCCATAAGAGGGGCGCATGTATCTCTCCGGGTCATACTTGACGTATCACATCCGTCACCCCCACCCCAACTCTATCTTCCTTATCAGTGAACCGGAAATAGTGCATAGATACTCTTCAATGCTGCGGGGACGAGACGACGTGACATACTACGATCACGTACAGAAGTGCAGCCCTTCGGCTCGGCAATATGGAACCTCTCAACAGCTCCCGTTCCTTTATGAGGTCCTATCGGGATAGGTAGGCCCAAGCCTTTCCCCTCTTCCCGACCGAGCAGTAGTTCCCCACGGCTGACAAATAGGAATTTAGGCCGTAAAAGATAAGCACCGGCCAGGCCTAGCTTTTTATGGTAGCTGACGCTAGAATCTTTTTATATTAGATATGAGAAACCTGATCCCTTTCGAGTCTTTCATTCCCCGCTTTCTGTCCATGTCTGGTCACTTAAAACGCTTTCTTCTCTTATTTCTTCAATTTCTAGCCAAGACGCCAAGTTAAGATTCCAGTGGAGATGAAGACCATCAGACACCGATTCTGAGGATTTAGGACACAATACAAGAGAGAGATGGAGTCGTCTGGTTGCAACACGACTTGGGAAACGTTTTTTGATGAGCTGCTCTACAGGTGTACGAGAAAGACGGGAATGTAAATAGAAAACATCGCCTGGGAAAGCCTCACGGCCTGGTGGTCGGCGTAACAATAATGACATTTGTCGATATGCCACCGCCTGTTTACTAAGATCATCATAGATTATTAATGCGTGCATTCCATTATCGCGGAAATATTCCCCCATGGCACACCTCTCTTCAAAGCCGGACGGAGGATCACTTTTTCTTTGAACGAATCTTGCTCTCTTATCTGCTTCTTCTTTTGTTGACAATTCTTCTGTTATCGTAGAGGGAAGAACTGGTCTTTCAGGGCCCCGACGGGTCAATGCTTTGGATTCAGCCAAATCCCCTAGTATATGAAAGAGTGAAAAAGTGCTTTCGTTGTTGTGGAATAAGAAGCCTTCGTATTTTAATGCATGTGTTTAATTTATTCGGAGCTATTAGAGCGGGATCCACTTTTTGGGGAATATGGGTCGAAGCAATAACAAGAATATTTCTAGAGGTTGCTTCCTAAAAAGAACTGGGTTTGGCTCGTTGCCTTTGATTCTTTACCCATAGCATAAGATAAAGGGTGCGTGCTTCAACATCTCAGTTTGAACCTTTTGCTCTTAAGGAGAAAACTACGATCTTTGCTGGACTGGCAGTTCAGCCACGTAATTTATCCCTCAAGCTGAACTGAACGAACTTGACCTGCTCCTTTAGTTTAGGGCAATAGAGTTGACTTGCTTCTCACTAACGGCTGAATCATAAGCTTCATCACTCGACTCTAAACCAAAATCGAATATATATATAATAGGATAATTATGTATCAAATTGTAAAATGCGCAATCTCAATACTTCTGCTGAAGATTTGCGGGAGCGGTAGCCGTTTCATTCCTTTTCTTTTTTATGTTAGAGGGTGCAAAATCGATTGGAGCAGGAGCTGCAACAATAGCTTTAGCTGAAGCTGCTGTCGGGTGATGGTGATCTTTTTCTCTTTCAGGGCACGGACAGCCTTGAACTCTTCCATGTCCCACAGAAAATTCTCGTTTAGATCGATATTTATCTGCTTCTTGTCTGGGCCAGAGCTCCATGCAAATTATCCTTTCAAAGTTGCAAAACACTTTCTCTTCGTACCTCAGATCAAGAGGAAGGGTAGCTTCTTAAGCTGGCCTATATATATTTATATATAAAAAAAGATTCGTTGTCTTTTAACCGTCTGTTCTTCTTTGTCAACGCTACGTTGGACCTAAAGGAAAAGGCGCAACTTAGGGCCTCTGCCCTTCCATCCCTTGGATAGATAGAGAGGGAGGGCAGAGCTTTTTTTGGTTTTTTCATGTTGTCAAAGAGTTGAACAATGGTTTTTTCGTGTTGTCAAAGAGTTGAACAATGAAAATAGATGGCGAGGCGGGTAGTAATATCAAGTGATCTGATGATCCAGCCTTTTGTGGCCTGGTTAAAGAGTTTTCTGAATGGAATAAGCATTCAACCGACCATTTCCTTTCTTAAATAAGGGAGATCATTTCGATTCCATTAGTAATGAGGATTCGGAATATCACACATTGATCAATCAAAGAGAGATTCAACAACTAAAAGAAAGATCGATTCTTTGGGATCCTTCCTTTCTTCAAACGGAACGAACAGAGATAGAATCAGACCGATTCCCTAAATGTATGGATGGTATGAACTGCCTAAACAAGAATTCTTGAACAGCGAACAGCCAGAGTTATTACTCACTACATCAAAAAATTTCCATTAATGAAAGATGTAAATCCATTGGAAAATCAAAAATACGCATGCCAGATGAAATGGTTGTTGCTATCTGTTACAATACGCCGCTTTACCCTGAAAGGAAAATGAGCTTTGCTCCTCTGGGCTCCCGGCGCTCCCGTGGTTCGCGAGAAGGAAAAAGGACTCATCCTTTGTTGCATCTGGCACGAGATGATAAAGAGAGAGCTTCGTCTATCGATGAACAGCGGATTGACGCTCCCCAAACCGTGCTTGCATTTTTCATTGCACACGGCTTTACCTATGTATACATCTAAAACGCAGTTACTTCCCTAGGCAGGATTCTAACTAAGAAAGTGGAATATTCTGTTGATCAACTCTTACCAAATGAACATTTCATAATAGAAATTAATGAATTTTTTTGTTATCTCTTCACTTCAGCATTTATTAAGTAA

mRNA sequence

ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAATCATTCGCTTCCGGAAGAAATCGAAGAATTTCTCGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCACCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAGCGCACCAAGCAAGAAAACGGTGGATTGACTGGCGAACTCGTGCAATCAACCAAAAGAGCCTTCGCCTCTCGAGATCCCATACTACCCCCCATAAACTGAAAATCCATAACCCCAATTGCTACGGGCTATTTCACCTCCAGTCCACAGAGATTCATTTCACCGATGCGAAGAAGTCCTCTCGAGACCGTTCTGTTCCTACTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGAATATTATGTATTCACGGGTTCCCTCGTTCCCATCGCCTCTCGATTAATGTCGCATACCCTGAGGACGGACAAATTTCCGATAGCGAATTACTTGACTCAATGGATGGAGGGAGGGCCCCCCAACTTAAGCACGAAATCAATGTTGAGTCAACAATCATCGAGAGGGGCACCACCAAGCGAGATCGAGACCAGCACCTTGGCCTTGGATAGGGGCGCAAGCGGCCCTTTCGCGACTCAAACTGCCGATACGCTTTCCGGCTCGGAACGACCGACTCAAACGGGCGGGGGCTCTCTATTTGCTTGCAATGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAGGGCGCCCTTTGCCCCACACTGAAGAAAAACCATTCCCCAAAAAGGGAGAGACGAGGGAATCGTCTGCTCCTGTTTATGTGACGAATCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCAAGATCTGATCTCCATTACGTGGTACGATATATCTATCGATCCAAAGAACTGACTTTCAGTTGAGAAAACTACGATCTTTGCTGGACTGGCAGTTCAGCCACGGCACGGACAGCCTTGAACTCTTCCATGTCCCACAGAAAATTCTCGTTTAGATCGATATTTATCTGCTTCTTGTCTGGGCCAGAGCTCCATGCAAATTATCCTTTCAAAGTTGCAAAACACTTTCTCTTCGTACCTCAGATCAAGAGGAAGGCATTTATTAAGTAA

Coding sequence (CDS)

ATGTCCCGGCTATTCACGGAACGTGAGAAGCAGATGAATAATCATTCGCTTCCGGAAGAAATCGAAGAATTTCTCGGGAATCCTACAAGATCCATTCGTTCTTTTTTCTCTGACAGATGGTCACCAGCGAAGAAAACGCCTACGACTAAGTCAGGCGCACTAGCGCACCAAGCAAGAAAACGGTGGATTGACTGGCGAACTCGTGCAATCAACCAAAAGAGCCTTCGCCTCTCGAGATCCCATACTACCCCCCATAAACTGAAAATCCATAACCCCAATTGCTACGGGCTATTTCACCTCCAGTCCACAGAGATTCATTTCACCGATGCGAAGAAGTCCTCTCGAGACCGTTCTGTTCCTACTCCAGAAAAGGTGGTTGTGTATTTCCCAAGCGGAAAGTCGTTGGTGGGCAAACCAAGGCCAGTGCCCTACGTGTCCGAATATTATGTATTCACGGGTTCCCTCGTTCCCATCGCCTCTCGATTAATGTCGCATACCCTGAGGACGGACAAATTTCCGATAGCGAATTACTTGACTCAATGGATGGAGGGAGGGCCCCCCAACTTAAGCACGAAATCAATGTTGAGTCAACAATCATCGAGAGGGGCACCACCAAGCGAGATCGAGACCAGCACCTTGGCCTTGGATAGGGGCGCAAGCGGCCCTTTCGCGACTCAAACTGCCGATACGCTTTCCGGCTCGGAACGACCGACTCAAACGGGCGGGGGCTCTCTATTTGCTTGCAATGCCGGCTGTTCGCCTTTAGTTAGAAGTAGAGGGCGCCCTTTGCCCCACACTGAAGAAAAACCATTCCCCAAAAAGGGAGAGACGAGGGAATCGTCTGCTCCTGTTTATGTGACGAATCGAACAACCATCGTTAGGTCCCGAATTCAGCGAACCACCGGATCCAGACCAAGATCTGATCTCCATTACGTGGTACGATATATCTATCGATCCAAAGAACTGACTTTCAGTTGA

Protein sequence

MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAKKTPTTKSGALAHQARKRWIDWRTRAINQKSLRLSRSHTTPHKLKIHNPNCYGLFHLQSTEIHFTDAKKSSRDRSVPTPEKVVVYFPSGKSLVGKPRPVPYVSEYYVFTGSLVPIASRLMSHTLRTDKFPIANYLTQWMEGGPPNLSTKSMLSQQSSRGAPPSEIETSTLALDRGASGPFATQTADTLSGSERPTQTGGGSLFACNAGCSPLVRSRGRPLPHTEEKPFPKKGETRESSAPVYVTNRTTIVRSRIQRTTGSRPRSDLHYVVRYIYRSKELTFS
Homology
BLAST of Clc11G07650 vs. NCBI nr
Match: YP_009934806.1 (hypothetical chloroplast RF21 [Morella cerifera] >YP_009934823.1 hypothetical chloroplast RF21 [Morella cerifera] >QNR95437.1 hypothetical chloroplast RF21 [Morella cerifera] >QNR95454.1 hypothetical chloroplast RF21 [Morella cerifera])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 514

BLAST of Clc11G07650 vs. NCBI nr
Match: KAB1228292.1 (Protein Ycf2 [Morella rubra])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 365 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 417

BLAST of Clc11G07650 vs. NCBI nr
Match: ARS44304.1 (hypothetical chloroplast RF21 [Morella rubra] >ARS44321.1 hypothetical chloroplast RF21 [Morella rubra] >ARS44387.1 hypothetical chloroplast RF21 [Morella rubra] >ARS44404.1 hypothetical chloroplast RF21 [Morella rubra])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 514

BLAST of Clc11G07650 vs. NCBI nr
Match: YP_009917875.1 (Ycf2 [Morella salicifolia] >YP_009917893.1 Ycf2 [Morella salicifolia] >QLM01909.1 Ycf2 [Morella salicifolia] >QLM01928.1 Ycf2 [Morella salicifolia])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 514

BLAST of Clc11G07650 vs. NCBI nr
Match: KAB1207984.1 (Protein Ycf2 [Morella rubra])

HSP 1 Score: 86.7 bits (213), Expect = 4.1e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 366 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 418

BLAST of Clc11G07650 vs. ExPASy Swiss-Prot
Match: A6MM80 (Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-15
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERS 514

BLAST of Clc11G07650 vs. ExPASy Swiss-Prot
Match: Q7Y667 (Protein Ycf2 OS=Calycanthus floridus var. glaucus OX=212734 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-15
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Sbjct: 456 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERS 508

BLAST of Clc11G07650 vs. ExPASy Swiss-Prot
Match: A6MMG6 (Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-15
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Sbjct: 465 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHPGSNPTERS 517

BLAST of Clc11G07650 vs. ExPASy Swiss-Prot
Match: Q0G9F7 (Protein Ycf2 OS=Liriodendron tulipifera OX=3415 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-15
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Sbjct: 461 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERS 513

BLAST of Clc11G07650 vs. ExPASy Swiss-Prot
Match: Q09FY5 (Protein Ycf2 OS=Platanus occidentalis OX=4403 GN=ycf2-A PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.5e-15
Identity = 43/53 (81.13%), Postives = 44/53 (83.02%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS       PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELHLGSNPTERS 514

BLAST of Clc11G07650 vs. ExPASy TrEMBL
Match: A0A7H1AGU4 (Protein Ycf2 OS=Morella cerifera OX=3510 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 514

BLAST of Clc11G07650 vs. ExPASy TrEMBL
Match: A0A1X9ZGQ8 (Protein Ycf2 OS=Morella rubra OX=262757 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 514

BLAST of Clc11G07650 vs. ExPASy TrEMBL
Match: A0A1X9ZFX8 (Protein Ycf2 OS=Morella rubra OX=262757 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 462 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 514

BLAST of Clc11G07650 vs. ExPASy TrEMBL
Match: A0A6A1WUF4 (Protein Ycf2 OS=Morella rubra OX=262757 GN=ycf2 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 366 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 418

BLAST of Clc11G07650 vs. ExPASy TrEMBL
Match: A0A6A1V5B6 (Protein Ycf2 OS=Morella rubra OX=262757 GN=CJ030_MR7G002546 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-13
Identity = 44/53 (83.02%), Postives = 45/53 (84.91%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWS--PAKKTPTTKS 52
           MSRLFTEREKQMNNH LPEEIEEFLGNPTRSIRSFFSDRWS  P    PT +S
Sbjct: 366 MSRLFTEREKQMNNHLLPEEIEEFLGNPTRSIRSFFSDRWSELPLGSNPTERS 418

BLAST of Clc11G07650 vs. TAIR 10
Match: ATCG00860.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-14
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS 52
           M RLFTEREK+MNNH LPEE EEFLGNPTR+IRSFFSDRWS       PT +S
Sbjct: 462 MPRLFTEREKRMNNHLLPEESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERS 514

BLAST of Clc11G07650 vs. TAIR 10
Match: ATCG01280.1 (Chloroplast Ycf2;ATPase, AAA type, core )

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-14
Identity = 39/53 (73.58%), Postives = 42/53 (79.25%), Query Frame = 0

Query: 1   MSRLFTEREKQMNNHSLPEEIEEFLGNPTRSIRSFFSDRWSPAK--KTPTTKS 52
           M RLFTEREK+MNNH LPEE EEFLGNPTR+IRSFFSDRWS       PT +S
Sbjct: 462 MPRLFTEREKRMNNHLLPEESEEFLGNPTRAIRSFFSDRWSELHLGSNPTERS 514

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
YP_009934806.14.1e-1383.02hypothetical chloroplast RF21 [Morella cerifera] >YP_009934823.1 hypothetical ch... [more]
KAB1228292.14.1e-1383.02Protein Ycf2 [Morella rubra][more]
ARS44304.14.1e-1383.02hypothetical chloroplast RF21 [Morella rubra] >ARS44321.1 hypothetical chloropla... [more]
YP_009917875.14.1e-1383.02Ycf2 [Morella salicifolia] >YP_009917893.1 Ycf2 [Morella salicifolia] >QLM01909.... [more]
KAB1207984.14.1e-1383.02Protein Ycf2 [Morella rubra][more]
Match NameE-valueIdentityDescription
A6MM803.5e-1581.13Protein Ycf2 OS=Buxus microphylla OX=153571 GN=ycf2-A PE=3 SV=1[more]
Q7Y6673.5e-1581.13Protein Ycf2 OS=Calycanthus floridus var. glaucus OX=212734 GN=ycf2-A PE=3 SV=1[more]
A6MMG63.5e-1581.13Protein Ycf2 OS=Chloranthus spicatus OX=13006 GN=ycf2-A PE=3 SV=1[more]
Q0G9F73.5e-1581.13Protein Ycf2 OS=Liriodendron tulipifera OX=3415 GN=ycf2-A PE=3 SV=1[more]
Q09FY53.5e-1581.13Protein Ycf2 OS=Platanus occidentalis OX=4403 GN=ycf2-A PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A7H1AGU42.0e-1383.02Protein Ycf2 OS=Morella cerifera OX=3510 GN=ycf2 PE=3 SV=1[more]
A0A1X9ZGQ82.0e-1383.02Protein Ycf2 OS=Morella rubra OX=262757 GN=ycf2 PE=3 SV=1[more]
A0A1X9ZFX82.0e-1383.02Protein Ycf2 OS=Morella rubra OX=262757 GN=ycf2 PE=3 SV=1[more]
A0A6A1WUF42.0e-1383.02Protein Ycf2 OS=Morella rubra OX=262757 GN=ycf2 PE=3 SV=1[more]
A0A6A1V5B62.0e-1383.02Protein Ycf2 OS=Morella rubra OX=262757 GN=CJ030_MR7G002546 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00860.13.1e-1473.58Chloroplast Ycf2;ATPase, AAA type, core [more]
ATCG01280.13.1e-1473.58Chloroplast Ycf2;ATPase, AAA type, core [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008543Uncharacterised protein family Ycf2PFAMPF05695DUF825coord: 1..43
e-value: 1.6E-19
score: 68.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 223..244
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 256..282
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..207
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 261..276
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 188..244
NoneNo IPR availablePANTHERPTHR33078PROTEIN YCF2-RELATEDcoord: 1..44
NoneNo IPR availablePANTHERPTHR33078:SF69BNAA06G19310D PROTEINcoord: 1..44

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc11G07650.2Clc11G07650.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0009570 chloroplast stroma
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity