Clc11G07590 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G07590
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ATP synthase protein MI25
Location	ClcChr11: 7701635 .. 7702467 (+)
RNA-Seq Expression	Clc11G07590
Synteny	Clc11G07590

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTGCACTCCTCCATTGATGATATCTCGTCAGTCCCTGATCTCCTCCGGTGGCCTTACTTTGCTTTCAGGTCAAAAAACGAATCTAGCTTTCGCTTGGACTCCTTAATGAATATAATTAGAATTGCATGTGTTAAGCGTTTGAATAGCTGTCTTGGTATTCTTTTTTTGAGAAGTAGAAATGGTTAGCCAAAGACTTCCGTCAATGAACATGAGAAAGAAGCATCTCTTTTCTAAGATTAATATGAGGCCTGCAGAGAAAAACGATAAAGCTCATGACTTGTATCAAGTCCAAGTAAAGAAAATTAGTATGGTATGTAATGTGAAATGAACAAATAAATCATGGATCAACTAAGCCAAGCATACCCGCTTACTACCCAAGAAGTAAGCTTAAATGATCCGTGAATAGCCGGGACATTGAGGAATATCCAGAAAAGCATTTAGGGAATCGGTCTGATTCTATCTCTGTTCGTTCCGTTTGAAGAAAGGAAGGATCCCAAAGAATCGATCTTTCTTTTAGTTGTTGAATCTCTCTTTGATTGATCAATGTGTGATATTCCGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATCAGAAGATCCTTTCAATTGGCTAGTTTAGGTAAGACTTTCAAAGCGACTCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTTCCCAATCCTAACGAAGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGTTTGCGAATAGGGCCTGAAAGAGTGGGAGAATGCGATGAAAGAGGAGATTTCTGCCTGAACCTTAAAGAAGAATGA

mRNA sequence

CCTGCACTCCTCCATTGATGATATCTCGTCAGTCCCTGATCTCCTCCGGTGGCCTTACTTTGCTTTCAGGTCAAAAAACGAATCTAGCTTTCGCTTGGACTCCTTAATGAATATAATTAGAATTGCATGTGTTAAGCGTTTGAATAGCTGTCTTGGTATTCTTTTTTTGAGAAGTAGAAATGGTTAGCCAAAGACTTCCGTCAATGAACATGAGAAAGAAGCATCTCTTTTCTAAGATTAATATGAGGCCTGCAGAGAAAAACGATAAAGCTCATGACTTGTATCAAGTCCAAGTAAAGAAAATTAGTATGTTGTTGAATCTCTCTTTGATTGATCAATGTGTGATATTCCGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATCAGAAGATCCTTTCAATTGGCTAGTTTAGGTAAGACTTTCAAAGCGACTCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTTCCCAATCCTAACGAAGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGTTTGCGAATAGGGCCTGAAAGAGTGGGAGAATGCGATGAAAGAGGAGATTTCTGCCTGAACCTTAAAGAAGAATGA

Coding sequence (CDS)

ATGGTTAGCCAAAGACTTCCGTCAATGAACATGAGAAAGAAGCATCTCTTTTCTAAGATTAATATGAGGCCTGCAGAGAAAAACGATAAAGCTCATGACTTGTATCAAGTCCAAGTAAAGAAAATTAGTATGTTGTTGAATCTCTCTTTGATTGATCAATGTGTGATATTCCGAATCCTCATTACTAATGGAATCGAAATGATCTCTGGATTGATCAGAAGATCCTTTCAATTGGCTAGTTTAGGTAAGACTTTCAAAGCGACTCTCGACGGGAGAATCCAGGCTATTCAGGAAGAATCGCAGCAATTTCCCAATCCTAACGAAGTAGTTCCTCCGGAATCCAATGAACAACAACGATTACTTAGGATCAGTTTGCGAATAGGGCCTGAAAGAGTGGGAGAATGCGATGAAAGAGGAGATTTCTGCCTGAACCTTAAAGAAGAATGA

Protein sequence

MVSQRLPSMNMRKKHLFSKINMRPAEKNDKAHDLYQVQVKKISMLLNLSLIDQCVIFRILITNGIEMISGLIRRSFQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRIGPERVGECDERGDFCLNLKEE

Homology

[Close]

BLAST of Clc11G07590 vs. NCBI nr
Match: KAG6588544.1 (hypothetical protein SDJN03_17109, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-16
Identity = 55/74 (74.32%), Postives = 58/74 (78.38%), Query Frame = 0


Query: 57  FRILITNGIEM---ISGLIRRSFQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPE 116
           FR+  T  +E    I G I   F   SLGKTFKATLDGRIQAIQ+ESQQFPNPNEVVPPE
Sbjct: 127 FRVRGTIAVEFLNSIQGFI--IFSRQSLGKTFKATLDGRIQAIQDESQQFPNPNEVVPPE 186

Query: 117 SNEQQRLLRISLRI 128
           SNEQQRLLRISLRI
Sbjct: 187 SNEQQRLLRISLRI 198

[Close]

BLAST of Clc11G07590 vs. NCBI nr
Match: KAG9438862.1 (hypothetical protein H6P81_021160 [Aristolochia fimbriata])

HSP 1 Score: 95.5 bits (236), Expect = 4.1e-16
Identity = 48/52 (92.31%), Postives = 49/52 (94.23%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFKATLDGRI+AIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 41  FSRKSLGKTFKATLDGRIEAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 92

[Close]

BLAST of Clc11G07590 vs. NCBI nr
Match: P09003.1 (RecName: Full=ATP synthase protein MI25; AltName: Full=ORF 25 [Nicotiana tabacum])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 48  FSWKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 99

[Close]

BLAST of Clc11G07590 vs. NCBI nr
Match: AUD38035.1 (ATPase subunit 4 [Luculia grandifolia])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 48  FSRKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 99

[Close]

BLAST of Clc11G07590 vs. NCBI nr
Match: KAG5076062.1 (hypothetical protein JHK82_057421 [Glycine max])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 46  FSRKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 97

[Close]

BLAST of Clc11G07590 vs. ExPASy Swiss-Prot
Match: P09003 (ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 7.0e-19
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 48  FSWKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 99

[Close]

BLAST of Clc11G07590 vs. ExPASy Swiss-Prot
Match: Q04613 (ATP synthase protein MI25 OS=Arabidopsis thaliana OX=3702 GN=AtMg00640 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 42/52 (80.77%), Postives = 43/52 (82.69%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLG TFK TLDG +QAIQEE QQFPNPNEVV  ESNEQQRLLRISLRI
Sbjct: 48  FSRKSLGTTFKVTLDGSLQAIQEELQQFPNPNEVVLLESNEQQRLLRISLRI 99

[Close]

BLAST of Clc11G07590 vs. ExPASy Swiss-Prot
Match: P68537 (ATP synthase protein MI25 OS=Triticum timopheevii OX=4570 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRI++IQEE  QF NPNEV+P ESNEQQRLLRISLRI
Sbjct: 48  FSRKSLGKTFKETLDGRIESIQEELLQFFNPNEVIPEESNEQQRLLRISLRI 99

[Close]

BLAST of Clc11G07590 vs. ExPASy Swiss-Prot
Match: P68538 (ATP synthase protein MI25 OS=Triticum aestivum OX=4565 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.0e-14
Identity = 41/52 (78.85%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRI++IQEE  QF NPNEV+P ESNEQQRLLRISLRI
Sbjct: 48  FSRKSLGKTFKETLDGRIESIQEELLQFFNPNEVIPEESNEQQRLLRISLRI 99

[Close]

BLAST of Clc11G07590 vs. ExPASy Swiss-Prot
Match: Q00058 (ATP synthase protein MI25 OS=Oryza sativa subsp. indica OX=39946 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 6.7e-14
Identity = 40/52 (76.92%), Postives = 44/52 (84.62%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRI++IQEE QQF NP +V+P ESNEQQRLLRISLRI
Sbjct: 49  FSRKSLGKTFKETLDGRIESIQEELQQFFNPKQVIPGESNEQQRLLRISLRI 100

[Close]

BLAST of Clc11G07590 vs. ExPASy TrEMBL
Match: S4SKT0 (ATP synthase protein MI25 OS=Gossypium hirsutum OX=3635 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 47  FSRKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 98

[Close]

BLAST of Clc11G07590 vs. ExPASy TrEMBL
Match: A0A0N7D759 (ATP synthase protein MI25 OS=Gossypium barbadense OX=3634 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 47  FSRKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 98

[Close]

BLAST of Clc11G07590 vs. ExPASy TrEMBL
Match: A0A0D2PSH5 (ATP synthase protein MI25 OS=Gossypium raimondii OX=29730 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 47  FSRKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 98

[Close]

BLAST of Clc11G07590 vs. ExPASy TrEMBL
Match: A0A0G2QN01 (ATP synthase protein MI25 OS=Gossypium harknessii OX=34285 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 47  FSRKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 98

[Close]

BLAST of Clc11G07590 vs. ExPASy TrEMBL
Match: A0A0M4JST5 (ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 GN=atp4 PE=3 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 48/52 (92.31%), Postives = 48/52 (92.31%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLGKTFK TLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 48  FSRKSLGKTFKVTLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 99

[Close]

BLAST of Clc11G07590 vs. TAIR 10
Match: ATMG00640.1 (hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding )

HSP 1 Score: 89.7 bits (221), Expect = 2.1e-18
Identity = 45/52 (86.54%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 76  FQLASLGKTFKATLDGRIQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 128
           F   SLG TFK TLDG +QAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI
Sbjct: 48  FSRKSLGTTFKVTLDGSLQAIQEESQQFPNPNEVVPPESNEQQRLLRISLRI 99

The following BLAST results are available for this feature:

BLAST of Clc11G07590 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588544.1	4.1e-16	74.32	hypothetical protein SDJN03_17109, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG9438862.1	4.1e-16	92.31	hypothetical protein H6P81_021160 [Aristolochia fimbriata]	[more]
P09003.1	5.3e-16	92.31	RecName: Full=ATP synthase protein MI25; AltName: Full=ORF 25 [Nicotiana tabacum...	[more]
AUD38035.1	5.3e-16	92.31	ATPase subunit 4 [Luculia grandifolia]	[more]
KAG5076062.1	5.3e-16	92.31	hypothetical protein JHK82_057421 [Glycine max]	[more]

BLAST of Clc11G07590 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P09003	7.0e-19	92.31	ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 PE=2 SV=1	[more]
Q04613	3.0e-14	80.77	ATP synthase protein MI25 OS=Arabidopsis thaliana OX=3702 GN=AtMg00640 PE=1 SV=2	[more]
P68537	3.0e-14	78.85	ATP synthase protein MI25 OS=Triticum timopheevii OX=4570 PE=3 SV=1	[more]
P68538	3.0e-14	78.85	ATP synthase protein MI25 OS=Triticum aestivum OX=4565 PE=3 SV=1	[more]
Q00058	6.7e-14	76.92	ATP synthase protein MI25 OS=Oryza sativa subsp. indica OX=39946 PE=3 SV=1	[more]

BLAST of Clc11G07590 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
S4SKT0	2.6e-16	92.31	ATP synthase protein MI25 OS=Gossypium hirsutum OX=3635 GN=atp4 PE=3 SV=1	[more]
A0A0N7D759	2.6e-16	92.31	ATP synthase protein MI25 OS=Gossypium barbadense OX=3634 GN=atp4 PE=3 SV=1	[more]
A0A0D2PSH5	2.6e-16	92.31	ATP synthase protein MI25 OS=Gossypium raimondii OX=29730 GN=atp4 PE=3 SV=1	[more]
A0A0G2QN01	2.6e-16	92.31	ATP synthase protein MI25 OS=Gossypium harknessii OX=34285 GN=atp4 PE=3 SV=1	[more]
A0A0M4JST5	2.6e-16	92.31	ATP synthase protein MI25 OS=Nicotiana tabacum OX=4097 GN=atp4 PE=3 SV=1	[more]

BLAST of Clc11G07590 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG00640.1	2.1e-18	86.54	hydrogen ion transporting ATP synthases, rotational mechanism;zinc ion binding	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008688	ATP synthase, F0 complex, subunit B/MI25	PFAM	PF05405	Mt_ATP-synt_B	coord: 78..122 e-value: 6.3E-10 score: 38.9
IPR044988	ATP synthase, F0 complex, subunit MI25, plants	PANTHER	PTHR37774	ATP SYNTHASE PROTEIN MI25-RELATED	coord: 36..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G07590.1	Clc11G07590.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015986	ATP synthesis coupled proton transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0000276	mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
molecular_function	GO:0015078	proton transmembrane transporter activity