Clc11G07550 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G07550
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II D2 protein
Location	ClcChr11: 7682140 .. 7684961 (-)
RNA-Seq Expression	Clc11G07550
Synteny	Clc11G07550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCTGGTAACCAAAGCGTCACAACATAATAAAAAGGAATGAGTTTAGCTGACTGAATCCAATCCATAAACCCGGAAACGAAACAAAGTGCGTTCCCTTTCGTCAAGTAGGTCAAAAAATAGGTATACGAACCACTTTTGCTTTGCCTTAGACTCGATTGGAACAAAGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGGTATCTTTTTCAAGAGCATGCCTTAACTTAATTATTAATTAATAGGTTTTCAAAAGGCGTAGACTTTCTAAGTGAAGGCAAGCGCAACGAGATATTTCATATCCTCCCTGTCAGCAAGGCAGGTCCGAAGAGATGCCACAGGAGAATGGAATAAGTAGGAGAATTGTAGCCGACCTCTTAAGTAACATAGCGCAACTCAACGAAAGGAAATGAAAATGTTTGCGTATTCAGATGTGAAATGAACGGAATGAGTTAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAAGTTTCTTCTTTTTATTCTAACAAAGCAAATAGCATTTCCTATTGATTTGTCCCCTGGACTGGACCTATTCTTCTTCTTAATTATCTGTCGCTACGCTGTTCCCAAGGACTAGCAAAATCGAGAATTCCCTTCAACTATTATTGAAAACTAACGAATCAAATTTCGTGGAGTTGAAGGGAAATATCCAAATACATGTCTTATTTTTCAATAATCCATATTTGCAGCAATGAAATACTCTTCTTCCTCCCCCGAGTAATCATAAATAACTAACTACAAATCTATGATTGCCCCATTAACGAAAAAGAAAAAATCAAAAGATAAGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATAGCTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTTGAAAAGAGATTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATAGAGTGTTGGTCCAAACATTCTTATCTAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCAGTAAGCTTTGCAGTTAGAACCCAGTAGGTAGCTAGAGCGGGGCAAGCTTTCTTCAAGTCCCTCCGAGGACGACTCCCATACAATTCTTGTGAGAGCTGGAGAAGCGTCTACGGGTAAAGCACCGTATCCATATAACAGCTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTTAGGTCGTAGCAACGCGGGTATATCTCAGTATGGAGGATGAGACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTACTACCCGGAATAGCTATTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGTCCGGAGGAAAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCGCCAATGAGTTTTTTTTTTTTTTTTGAGACAAAAAAGAAAACTATGCCTTCGCCATATAAAATATGAATATTTAAGTAATAATAGCATGGCACTTTGAATTCGATATGAGAATTTTTTTTCTTGTTTTTTTTTCTAAACCATTAGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG

mRNA sequence

ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCTGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAACTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCACTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTTAGGTCGTAGCAACGCGGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG

Coding sequence (CDS)

ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCTGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAACTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCACTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTTAGGTCGTAGCAACGCGGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG

Protein sequence

MTETAGNSRGSPLEAFAAKKEGGGMEKGKGPKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVAGDKRMEARPQVTGHVGHWPCFAHQRLSAWEIHNHLFWSRNLNERNNWRLFIQLWVRYPDHDFPTPRGKSPSLFGRAGPADVPTEAGAPAAITSGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVGKTLFNWHSRSLLKKKTTCHLRSAIHSNFRNLGNSIPIKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVSVLWGTVKHIRQGSRGISLLHSLGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIRVALCVSTRAVL

Homology

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BLAST of Clc11G07550 vs. NCBI nr
Match: OMP01689.1 (Photosynthetic reaction centre, L/M [Corchorus capsularis])

HSP 1 Score: 248.4 bits (633), Expect = 1.1e-61
Identity = 142/235 (60.43%), Postives = 158/235 (67.23%), Query Frame = 0


Query: 241 RSAIHSNFRNLGNSIP------IKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVS--- 300
           R+++H+N      ++P      ++E   G SQ GS L+G        TA V +P  S   
Sbjct: 39  RASLHTNKLKSDLAVPDPQALTLREEWNGTSQLGSYLEGCNFL----TAAVSTPANSLSH 98

Query: 301 ---VLWGTVKHIRQG-----SRGIS---------------------LLHSLGRSNAGLLC 360
              +LWG     + G     S G++                     ++   G   A LLC
Sbjct: 99  SLLLLWGPEAQGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMEVAGVLGAALLC 158

Query: 361 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 420
           AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM
Sbjct: 159 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 218

Query: 421 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 219 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 269

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BLAST of Clc11G07550 vs. NCBI nr
Match: YP_009240341.1 (photosystem II D2 protein [Gymnochlora stellata] >BAU62475.1 photosystem II D2 protein [Gymnochlora stellata])

HSP 1 Score: 244.2 bits (622), Expect = 2.1e-60
Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 161 SGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVG 220
           SGLLLF  A  A+G    G  F       G A S  +G       FL+     P   V  
Sbjct: 33  SGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGC-----NFLTAAVSTPSNAVGH 92

Query: 221 KTLFNWHSRSLLKKKTTCHLRS-----AIHSNFRNLGNSIPIKELTKGM----------S 280
             LF W   +       C L       A+H +F  +G  +   E+ + +          S
Sbjct: 93  SLLFLWGVEAQGNFTRWCQLGGLWPFVALHGSFGLIGFMLRQFEIAQSVRLRPYNAIAFS 152

Query: 281 QTGSLLDGVQLAETLGTAG---VRSPQVSVLWGTVKHIRQGSRGISL--LHSLGRS---N 340
              S+   V L   LG +G     S  V+ ++  +    QG    +L   H +G +    
Sbjct: 153 GPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF-QGFHNWTLNPFHMMGVAGVLG 212

Query: 341 AGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 400
           A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 213 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 272

Query: 401 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 273 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 326

[Close]

BLAST of Clc11G07550 vs. NCBI nr
Match: AGY61452.1 (photosystem II D2 protein [Lotharella oceanica])

HSP 1 Score: 244.2 bits (622), Expect = 2.1e-60
Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 161 SGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVG 220
           SGLLLF  A  A+G    G  F       G A S  +G       FL+     P   V  
Sbjct: 33  SGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGC-----NFLTAAVSTPSNAVGH 92

Query: 221 KTLFNWHSRSLLKKKTTCHLRS-----AIHSNFRNLGNSIPIKELTKGM----------S 280
             LF W   +       C L       A+H +F  +G  +   E+ + +          S
Sbjct: 93  SLLFLWGLEAQGNFTRWCQLGGLWPFVALHGSFGLIGFMLRQFEIAQSVKLRPYNAIAFS 152

Query: 281 QTGSLLDGVQLAETLGTAG---VRSPQVSVLWGTVKHIRQGSRGISL--LHSLGRS---N 340
              S+   V L   LG +G     S  V+ ++  +    QG    +L   H +G +    
Sbjct: 153 GPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF-QGFHNWTLNPFHMMGVAGVLG 212

Query: 341 AGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 400
           A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 213 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 272

Query: 401 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 273 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 326

[Close]

BLAST of Clc11G07550 vs. NCBI nr
Match: YP_009240444.1 (photosystem II D2 protein [Partenskyella glossopodia] >BAU62578.1 photosystem II D2 protein [Partenskyella glossopodia])

HSP 1 Score: 244.2 bits (622), Expect = 2.1e-60
Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 161 SGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVG 220
           SGLLLF  A  A+G    G  F       G A S  +G       FL+     P   V  
Sbjct: 33  SGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGC-----NFLTAAVSTPSNAVGH 92

Query: 221 KTLFNWHSRSLLKKKTTCHLRS-----AIHSNFRNLGNSIPIKELTKGM----------S 280
             LF W   +       C L       A+H +F  +G  +   E+ + +          S
Sbjct: 93  SLLFLWGLEAQGNFTRWCQLGGLWPFIALHGSFGLIGFMLRQFEIAQSVKLRPYNAIAFS 152

Query: 281 QTGSLLDGVQLAETLGTAG---VRSPQVSVLWGTVKHIRQGSRGISL--LHSLGRS---N 340
              S+   V L   LG +G     S  V+ ++  +    QG    +L   H +G +    
Sbjct: 153 GPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF-QGFHNWTLNPFHMMGVAGVLG 212

Query: 341 AGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 400
           A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 213 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 272

Query: 401 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 273 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 326

[Close]

BLAST of Clc11G07550 vs. NCBI nr
Match: QUV76072.1 (photosystem II protein D2 [Allium plurifoliatum])

HSP 1 Score: 243.8 bits (621), Expect = 2.8e-60
Identity = 120/131 (91.60%), Postives = 122/131 (93.13%), Query Frame = 0


Query: 307 ISLLHSLGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 366
           I ++   G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ
Sbjct: 267 IHMMGVAGVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQ 326

Query: 367 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFY 426
           IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFY
Sbjct: 327 IFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFY 386

Query: 427 TKNILLNEGIR 438
           TKNILLNEGIR
Sbjct: 387 TKNILLNEGIR 397

[Close]

BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63
Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 314 GRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 373
           G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS
Sbjct: 204 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 263

Query: 374 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLN 433
           NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLN
Sbjct: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLN 323

Query: 434 EGIR 438
           EGIR
Sbjct: 324 EGIR 327

[Close]

BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63
Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 314 GRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 373
           G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS
Sbjct: 204 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 263

Query: 374 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLN 433
           NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLN
Sbjct: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLN 323

Query: 434 EGIR 438
           EGIR
Sbjct: 324 EGIR 327

[Close]

BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63
Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 314 GRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 373
           G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS
Sbjct: 204 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 263

Query: 374 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLN 433
           NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLN
Sbjct: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLN 323

Query: 434 EGIR 438
           EGIR
Sbjct: 324 EGIR 327

[Close]

BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: A4QJJ4 (Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63
Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 314 GRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 373
           G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS
Sbjct: 204 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 263

Query: 374 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLN 433
           NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLN
Sbjct: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLN 323

Query: 434 EGIR 438
           EGIR
Sbjct: 324 EGIR 327

[Close]

BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: Q70Y08 (Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63
Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 314 GRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 373
           G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS
Sbjct: 204 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 263

Query: 374 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLN 433
           NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLN
Sbjct: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLN 323

Query: 434 EGIR 438
           EGIR
Sbjct: 324 EGIR 327

[Close]

BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A1R3K3M0 (Photosynthetic reaction centre, L/M OS=Corchorus capsularis OX=210143 GN=CCACVL1_03030 PE=3 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 5.5e-62
Identity = 142/235 (60.43%), Postives = 158/235 (67.23%), Query Frame = 0


Query: 241 RSAIHSNFRNLGNSIP------IKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVS--- 300
           R+++H+N      ++P      ++E   G SQ GS L+G        TA V +P  S   
Sbjct: 39  RASLHTNKLKSDLAVPDPQALTLREEWNGTSQLGSYLEGCNFL----TAAVSTPANSLSH 98

Query: 301 ---VLWGTVKHIRQG-----SRGIS---------------------LLHSLGRSNAGLLC 360
              +LWG     + G     S G++                     ++   G   A LLC
Sbjct: 99  SLLLLWGPEAQGQSGWFFAPSFGVAAIFRFILFFQGFHNWTLNPFHMMEVAGVLGAALLC 158

Query: 361 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 420
           AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM
Sbjct: 159 AIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFM 218

Query: 421 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 219 LFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 269

[Close]

BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A059SNW1 (Photosystem II D2 protein OS=Lotharella oceanica OX=641309 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60
Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 161 SGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVG 220
           SGLLLF  A  A+G    G  F       G A S  +G       FL+     P   V  
Sbjct: 33  SGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGC-----NFLTAAVSTPSNAVGH 92

Query: 221 KTLFNWHSRSLLKKKTTCHLRS-----AIHSNFRNLGNSIPIKELTKGM----------S 280
             LF W   +       C L       A+H +F  +G  +   E+ + +          S
Sbjct: 93  SLLFLWGLEAQGNFTRWCQLGGLWPFVALHGSFGLIGFMLRQFEIAQSVKLRPYNAIAFS 152

Query: 281 QTGSLLDGVQLAETLGTAG---VRSPQVSVLWGTVKHIRQGSRGISL--LHSLGRS---N 340
              S+   V L   LG +G     S  V+ ++  +    QG    +L   H +G +    
Sbjct: 153 GPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF-QGFHNWTLNPFHMMGVAGVLG 212

Query: 341 AGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 400
           A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 213 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 272

Query: 401 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 273 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 326

[Close]

BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A140JZE8 (Photosystem II D2 protein OS=Gymnochlora stellata OX=67809 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60
Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 161 SGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVG 220
           SGLLLF  A  A+G    G  F       G A S  +G       FL+     P   V  
Sbjct: 33  SGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGC-----NFLTAAVSTPSNAVGH 92

Query: 221 KTLFNWHSRSLLKKKTTCHLRS-----AIHSNFRNLGNSIPIKELTKGM----------S 280
             LF W   +       C L       A+H +F  +G  +   E+ + +          S
Sbjct: 93  SLLFLWGVEAQGNFTRWCQLGGLWPFVALHGSFGLIGFMLRQFEIAQSVRLRPYNAIAFS 152

Query: 281 QTGSLLDGVQLAETLGTAG---VRSPQVSVLWGTVKHIRQGSRGISL--LHSLGRS---N 340
              S+   V L   LG +G     S  V+ ++  +    QG    +L   H +G +    
Sbjct: 153 GPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF-QGFHNWTLNPFHMMGVAGVLG 212

Query: 341 AGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 400
           A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 213 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 272

Query: 401 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 273 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 326

[Close]

BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A140JZQ1 (Photosystem II D2 protein OS=Partenskyella glossopodia OX=552666 GN=psbD PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60
Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 161 SGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVG 220
           SGLLLF  A  A+G    G  F       G A S  +G       FL+     P   V  
Sbjct: 33  SGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGC-----NFLTAAVSTPSNAVGH 92

Query: 221 KTLFNWHSRSLLKKKTTCHLRS-----AIHSNFRNLGNSIPIKELTKGM----------S 280
             LF W   +       C L       A+H +F  +G  +   E+ + +          S
Sbjct: 93  SLLFLWGLEAQGNFTRWCQLGGLWPFIALHGSFGLIGFMLRQFEIAQSVKLRPYNAIAFS 152

Query: 281 QTGSLLDGVQLAETLGTAG---VRSPQVSVLWGTVKHIRQGSRGISL--LHSLGRS---N 340
              S+   V L   LG +G     S  V+ ++  +    QG    +L   H +G +    
Sbjct: 153 GPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF-QGFHNWTLNPFHMMGVAGVLG 212

Query: 341 AGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 400
           A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 213 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 272

Query: 401 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 273 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 326

[Close]

BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A6U3EBT4 (Photosystem II D2 protein OS=Lotharella globosa OX=91324 GN=LGLO00237_LOCUS26610 PE=3 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60
Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0


Query: 161 SGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVG 220
           SGLLLF  A  A+G    G  F       G A S  +G       FL+     P   V  
Sbjct: 33  SGLLLFPCAYLALGGWLTGTTFVTSWYTHGLASSYLEGC-----NFLTAAVSTPSNAVGH 92

Query: 221 KTLFNWHSRSLLKKKTTCHLRS-----AIHSNFRNLGNSIPIKELTKGM----------S 280
             LF W   +       C L       A+H +F  +G  +   E+ + +          S
Sbjct: 93  SLLFLWGLEAQGNFTRWCQLGGLWPFVALHGSFGLIGFMLRQFEIAQSVKLRPYNAIAFS 152

Query: 281 QTGSLLDGVQLAETLGTAG---VRSPQVSVLWGTVKHIRQGSRGISL--LHSLGRS---N 340
              S+   V L   LG +G     S  V+ ++  +    QG    +L   H +G +    
Sbjct: 153 GPISVFVSVFLIYPLGQSGWFFAPSFGVAAIFRFILFF-QGFHNWTLNPFHMMGVAGVLG 212

Query: 341 AGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 400
           A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW
Sbjct: 213 AALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRW 272

Query: 401 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIR 438
           LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLNEGIR
Sbjct: 273 LHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLNEGIR 326

[Close]

BLAST of Clc11G07550 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D )

HSP 1 Score: 243.0 bits (619), Expect = 4.4e-64
Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0


Query: 314 GRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 373
           G   A LLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS
Sbjct: 204 GVLGAALLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFS 263

Query: 374 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLN 433
           NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRA EDPEFETFYTKNILLN
Sbjct: 264 NKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRAAEDPEFETFYTKNILLN 323

Query: 434 EGIR 438
           EGIR
Sbjct: 324 EGIR 327

[Close]

BLAST of Clc11G07550 vs. TAIR 10
Match: ATMG00520.1 (Intron maturase, type II family protein )

HSP 1 Score: 151.4 bits (381), Expect = 1.8e-36
Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 0


Query: 236 TTCHLRSAIHSNFRNLGNSIPIKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVSVLWG 295
           T CHLRSAIHS FRNLG+SIPIK+LTKGMS+TGSL DGVQLAETLGTAGVRSPQVSVLWG
Sbjct: 405 TACHLRSAIHSKFRNLGDSIPIKQLTKGMSKTGSLQDGVQLAETLGTAGVRSPQVSVLWG 464

Query: 296 TVKHIRQGSRGISLLHSLGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNP 349
           TVKHIRQGSRGIS LHS GRSNA        + V+  +   G  A     + P
Sbjct: 465 TVKHIRQGSRGISFLHSSGRSNA-------SSDVQQVVSRSGTHARKLSLYTP 510

[Close]

BLAST of Clc11G07550 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C )

HSP 1 Score: 73.6 bits (179), Expect = 4.7e-13
Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0


Query: 32  KPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFV 68
           KPFAWARRALVWSGEAYLSYSL ALSV GFIACCFV
Sbjct: 255 KPFAWARRALVWSGEAYLSYSLAALSVCGFIACCFV 290

[Close]

BLAST of Clc11G07550 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A )

HSP 1 Score: 60.8 bits (146), Expect = 3.1e-09
Identity = 34/104 (32.69%), Postives = 58/104 (55.77%), Query Frame = 0


Query: 309 LLHSLGRSNAGLLCAIHGATVENTLF-EDGDGANTFRAFNPTQAEETYSMVTANRFWSQI 368
           +L   G     L  A+HG+ V ++L  E  +  +    +   Q EETY++V A+ ++ ++
Sbjct: 199 MLGVAGVFGGSLFSAMHGSLVTSSLIRETTENESANEGYRFGQEEETYNIVAAHGYFGRL 258

Query: 369 F--GVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDF 410
                +F+N R LHFF+   PV G+W +ALG+  +A NL  ++F
Sbjct: 259 IFQYASFNNSRSLHFFLAAWPVVGIWFTALGISTMAFNLNGFNF 302

The following BLAST results are available for this feature:

BLAST of Clc11G07550 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP01689.1	1.1e-61	60.43	Photosynthetic reaction centre, L/M [Corchorus capsularis]	[more]
YP_009240341.1	2.1e-60	53.67	photosystem II D2 protein [Gymnochlora stellata] >BAU62475.1 photosystem II D2 p...	[more]
AGY61452.1	2.1e-60	53.67	photosystem II D2 protein [Lotharella oceanica]	[more]
YP_009240444.1	2.1e-60	53.67	photosystem II D2 protein [Partenskyella glossopodia] >BAU62578.1 photosystem II...	[more]
QUV76072.1	2.8e-60	91.60	photosystem II protein D2 [Allium plurifoliatum]	[more]

BLAST of Clc11G07550 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q4FFP4	6.3e-63	95.97	Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1	[more]
Q3V539	6.3e-63	95.97	Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1	[more]
A4QJB0	6.3e-63	95.97	Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1	[more]
A4QJJ4	6.3e-63	95.97	Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1	[more]
Q70Y08	6.3e-63	95.97	Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1	[more]

BLAST of Clc11G07550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3K3M0	5.5e-62	60.43	Photosynthetic reaction centre, L/M OS=Corchorus capsularis OX=210143 GN=CCACVL1...	[more]
A0A059SNW1	1.0e-60	53.67	Photosystem II D2 protein OS=Lotharella oceanica OX=641309 GN=psbD PE=3 SV=1	[more]
A0A140JZE8	1.0e-60	53.67	Photosystem II D2 protein OS=Gymnochlora stellata OX=67809 GN=psbD PE=3 SV=1	[more]
A0A140JZQ1	1.0e-60	53.67	Photosystem II D2 protein OS=Partenskyella glossopodia OX=552666 GN=psbD PE=3 SV...	[more]
A0A6U3EBT4	1.0e-60	53.67	Photosystem II D2 protein OS=Lotharella globosa OX=91324 GN=LGLO00237_LOCUS26610...	[more]

BLAST of Clc11G07550 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00270.1	4.4e-64	95.97	photosystem II reaction center protein D	[more]
ATMG00520.1	1.8e-36	69.91	Intron maturase, type II family protein	[more]
ATCG00280.1	4.7e-13	94.44	photosystem II reaction center protein C	[more]
ATCG00020.1	3.1e-09	32.69	photosystem II reaction center protein A	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR036854	Photosystem II protein D1/D2 superfamily	GENE3D	1.20.85.10		coord: 313..414 e-value: 1.6E-15 score: 59.1
IPR036854	Photosystem II protein D1/D2 superfamily	SUPERFAMILY	81483	Bacterial photosystem II reaction centre, L and M subunits	coord: 318..439
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 32..67 e-value: 3.7E-7 score: 29.2
IPR000484	Photosynthetic reaction centre, L/M	PFAM	PF00124	Photo_RC	coord: 319..428 e-value: 7.7E-18 score: 64.6
IPR000484	Photosynthetic reaction centre, L/M	PANTHER	PTHR33149	PHOTOSYSTEM II PROTEIN D1	coord: 317..442
None	No IPR available	PANTHER	PTHR33149:SF7	PHOTOSYSTEM II D2 PROTEIN	coord: 317..442
IPR036001	Photosystem antenna protein-like superfamily	SUPERFAMILY	161077	Photosystem II antenna protein-like	coord: 32..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G07550.1	Clc11G07550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function	GO:0005506	iron ion binding
molecular_function	GO:0010242	oxygen evolving activity