Clc11G07550 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCTGGTAACCAAAGCGTCACAACATAATAAAAAGGAATGAGTTTAGCTGACTGAATCCAATCCATAAACCCGGAAACGAAACAAAGTGCGTTCCCTTTCGTCAAGTAGGTCAAAAAATAGGTATACGAACCACTTTTGCTTTGCCTTAGACTCGATTGGAACAAAGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGGTATCTTTTTCAAGAGCATGCCTTAACTTAATTATTAATTAATAGGTTTTCAAAAGGCGTAGACTTTCTAAGTGAAGGCAAGCGCAACGAGATATTTCATATCCTCCCTGTCAGCAAGGCAGGTCCGAAGAGATGCCACAGGAGAATGGAATAAGTAGGAGAATTGTAGCCGACCTCTTAAGTAACATAGCGCAACTCAACGAAAGGAAATGAAAATGTTTGCGTATTCAGATGTGAAATGAACGGAATGAGTTAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAAGTTTCTTCTTTTTATTCTAACAAAGCAAATAGCATTTCCTATTGATTTGTCCCCTGGACTGGACCTATTCTTCTTCTTAATTATCTGTCGCTACGCTGTTCCCAAGGACTAGCAAAATCGAGAATTCCCTTCAACTATTATTGAAAACTAACGAATCAAATTTCGTGGAGTTGAAGGGAAATATCCAAATACATGTCTTATTTTTCAATAATCCATATTTGCAGCAATGAAATACTCTTCTTCCTCCCCCGAGTAATCATAAATAACTAACTACAAATCTATGATTGCCCCATTAACGAAAAAGAAAAAATCAAAAGATAAGGCCATTCCATTTCGACAAAAGACCCACACCCAAGTTCCATAGCTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTTGAAAAGAGATTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATAGAGTGTTGGTCCAAACATTCTTATCTAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCAGTAAGCTTTGCAGTTAGAACCCAGTAGGTAGCTAGAGCGGGGCAAGCTTTCTTCAAGTCCCTCCGAGGACGACTCCCATACAATTCTTGTGAGAGCTGGAGAAGCGTCTACGGGTAAAGCACCGTATCCATATAACAGCTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTTAGGTCGTAGCAACGCGGGTATATCTCAGTATGGAGGATGAGACCAAAGATCTGTATTTATTTATAAACTCTCCCGGTGGATGGGTACTACCCGGAATAGCTATTTATGATACTATGCAATTTGTGCGACCAGATGTACAGACAATATGCATGGGATTAGCCGCTTCAATGGGATCTTTTATTCTGTCCGGAGGAAAAATTACCAAACGTCTAGCATTCCCTCACGCTCGGCGCCAATGAGTTTTTTTTTTTTTTTTGAGACAAAAAAGAAAACTATGCCTTCGCCATATAAAATATGAATATTTAAGTAATAATAGCATGGCACTTTGAATTCGATATGAGAATTTTTTTTCTTGTTTTTTTTTCTAAACCATTAGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCTGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAACTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCACTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTTAGGTCGTAGCAACGCGGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG ATGACGGAAACCGCCGGAAACTCGAGAGGGTCGCCTTTGGAAGCGTTCGCTGCTAAGAAAGAAGGAGGCGGAATGGAGAAAGGAAAGGGACCTAAACCATTTGCCTGGGCTCGCCGCGCACTTGTATGGTCTGGAGAAGCTTACTTGTCTTATAGTTTAGGTGCTTTATCTGTTTTTGGTTTTATTGCTTGTTGTTTTGTCGCCGGAGACAAGAGAATGGAAGCCCGACCTCAGGTTACCGGACACGTAGGGCACTGGCCTTGCTTTGCCCACCAACGACTTTCCGCTTGGGAAATACACAACCACCTTTTCTGGAGCAGGAACCTGAACGAGCGCAACAACTGGCGCCTTTTCATACAACTTTGGGTCCGCTATCCCGATCATGATTTTCCTACCCCCAGAGGGAAAAGTCCTTCCCTTTTTGGCCGGGCTGGGCCCGCGGATGTACCCACTGAAGCTGGTGCCCCTGCTGCAATCACATCTGGGTTATTGTTATTTTCAGGGGCTGGGCCCGCGGTCGGGCCCCCCCGGAAGGGGGCCTTCTTCGCCTTCCACCTAAGCTGCGCAGGAAAGGCCCAAAGCCAATCCCAGGGAACAGTGAAGCTTCATAGGGTCTTTCTGTCCAGGCCCGACCCCTATCCTCTAGTGTTGGTTGTGGGAAAGACTCTTTTCAATTGGCATTCCCGATCCCTATTGAAAAAGAAAACCACTTGCCACCTACGCTCCGCCATCCATTCAAACTTTAGGAACCTAGGTAATAGTATCCCGATCAAAGAGCTGACGAAGGGGATGAGCCAAACAGGGAGTCTACTGGACGGGGTTCAACTAGCGGAGACTCTTGGAACTGCTGGAGTAAGAAGTCCCCAAGTGAGCGTATTATGGGGGACCGTCAAGCACATCCGGCAAGGATCAAGGGGGATCTCGTTGTTGCATAGCTTAGGTCGTAGCAACGCGGGTCTGCTATGCGCTATTCATGGTGCTACCGTAGAAAATACCTTATTTGAGGATGGGGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTCTGGCCCTGAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATCCGTGCAACGGAAGATCCTGAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACGAAGGTATTCGTGTGGCGCTGTGCGTATCGACCCGTGCAGTGCTGTAG MTETAGNSRGSPLEAFAAKKEGGGMEKGKGPKPFAWARRALVWSGEAYLSYSLGALSVFGFIACCFVAGDKRMEARPQVTGHVGHWPCFAHQRLSAWEIHNHLFWSRNLNERNNWRLFIQLWVRYPDHDFPTPRGKSPSLFGRAGPADVPTEAGAPAAITSGLLLFSGAGPAVGPPRKGAFFAFHLSCAGKAQSQSQGTVKLHRVFLSRPDPYPLVLVVGKTLFNWHSRSLLKKKTTCHLRSAIHSNFRNLGNSIPIKELTKGMSQTGSLLDGVQLAETLGTAGVRSPQVSVLWGTVKHIRQGSRGISLLHSLGRSNAGLLCAIHGATVENTLFEDGDGANTFRAFNPTQAEETYSMVTANRFWSQIFGVAFSNKRWLHFFMLFVPVTGLWMSALGVVGLALNLRAYDFVSQEIRATEDPEFETFYTKNILLNEGIRVALCVSTRAVL Homology
BLAST of Clc11G07550 vs. NCBI nr
Match: OMP01689.1 (Photosynthetic reaction centre, L/M [Corchorus capsularis]) HSP 1 Score: 248.4 bits (633), Expect = 1.1e-61 Identity = 142/235 (60.43%), Postives = 158/235 (67.23%), Query Frame = 0
BLAST of Clc11G07550 vs. NCBI nr
Match: YP_009240341.1 (photosystem II D2 protein [Gymnochlora stellata] >BAU62475.1 photosystem II D2 protein [Gymnochlora stellata]) HSP 1 Score: 244.2 bits (622), Expect = 2.1e-60 Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0
BLAST of Clc11G07550 vs. NCBI nr
Match: AGY61452.1 (photosystem II D2 protein [Lotharella oceanica]) HSP 1 Score: 244.2 bits (622), Expect = 2.1e-60 Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0
BLAST of Clc11G07550 vs. NCBI nr
Match: YP_009240444.1 (photosystem II D2 protein [Partenskyella glossopodia] >BAU62578.1 photosystem II D2 protein [Partenskyella glossopodia]) HSP 1 Score: 244.2 bits (622), Expect = 2.1e-60 Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0
BLAST of Clc11G07550 vs. NCBI nr
Match: QUV76072.1 (photosystem II protein D2 [Allium plurifoliatum]) HSP 1 Score: 243.8 bits (621), Expect = 2.8e-60 Identity = 120/131 (91.60%), Postives = 122/131 (93.13%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: Q4FFP4 (Photosystem II D2 protein OS=Acorus americanus OX=263995 GN=psbD PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63 Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: Q3V539 (Photosystem II D2 protein OS=Acorus calamus OX=4465 GN=psbD PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63 Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: A4QJB0 (Photosystem II D2 protein OS=Aethionema cordifolium OX=434059 GN=psbD PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63 Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: A4QJJ4 (Photosystem II D2 protein OS=Aethionema grandiflorum OX=72657 GN=psbD PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63 Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy Swiss-Prot
Match: Q70Y08 (Photosystem II D2 protein OS=Amborella trichopoda OX=13333 GN=psbD PE=3 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 6.3e-63 Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A1R3K3M0 (Photosynthetic reaction centre, L/M OS=Corchorus capsularis OX=210143 GN=CCACVL1_03030 PE=3 SV=1) HSP 1 Score: 248.4 bits (633), Expect = 5.5e-62 Identity = 142/235 (60.43%), Postives = 158/235 (67.23%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A059SNW1 (Photosystem II D2 protein OS=Lotharella oceanica OX=641309 GN=psbD PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60 Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A140JZE8 (Photosystem II D2 protein OS=Gymnochlora stellata OX=67809 GN=psbD PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60 Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A140JZQ1 (Photosystem II D2 protein OS=Partenskyella glossopodia OX=552666 GN=psbD PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60 Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0
BLAST of Clc11G07550 vs. ExPASy TrEMBL
Match: A0A6U3EBT4 (Photosystem II D2 protein OS=Lotharella globosa OX=91324 GN=LGLO00237_LOCUS26610 PE=3 SV=1) HSP 1 Score: 244.2 bits (622), Expect = 1.0e-60 Identity = 161/300 (53.67%), Postives = 181/300 (60.33%), Query Frame = 0
BLAST of Clc11G07550 vs. TAIR 10
Match: ATCG00270.1 (photosystem II reaction center protein D ) HSP 1 Score: 243.0 bits (619), Expect = 4.4e-64 Identity = 119/124 (95.97%), Postives = 119/124 (95.97%), Query Frame = 0
BLAST of Clc11G07550 vs. TAIR 10
Match: ATMG00520.1 (Intron maturase, type II family protein ) HSP 1 Score: 151.4 bits (381), Expect = 1.8e-36 Identity = 79/113 (69.91%), Postives = 86/113 (76.11%), Query Frame = 0
BLAST of Clc11G07550 vs. TAIR 10
Match: ATCG00280.1 (photosystem II reaction center protein C ) HSP 1 Score: 73.6 bits (179), Expect = 4.7e-13 Identity = 34/36 (94.44%), Postives = 34/36 (94.44%), Query Frame = 0
BLAST of Clc11G07550 vs. TAIR 10
Match: ATCG00020.1 (photosystem II reaction center protein A ) HSP 1 Score: 60.8 bits (146), Expect = 3.1e-09 Identity = 34/104 (32.69%), Postives = 58/104 (55.77%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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