Clc11G06265 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G06265
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Polyprotein
Location	ClcChr11: 6141742 .. 6142185 (+)
RNA-Seq Expression	Clc11G06265
Synteny	Clc11G06265

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTCTCCTAAGAAAGATTCTATTTAAGAAGGCTCCAACAAAGGAGCTTAGTCAACATGAAGTAGAGGAGCAACATAAAGCTTCCTCTAATGATGTCAATCTCACTAATGAATATTTGCAAATAGCAAAGATTGAGCATCAACTTCAGAATTGGAGACTACCCAAATTAGATACAAAAGAAATTTTCGCACATAGCACCTTTAGTTTCAAAGAAAATTTGCGTGTCAAAATAGTCGAAAGAAAAATACCAGTCTACGGAAGCATAGATTCAATTCAATTATTTCCAAGAGATGATATCTTAAAATATAGGAGCGAATTTGAATTTCTTCACGTAGGAGCAGTGCAAGTGGCACTAAGACCAATGTTTAGATCAGTATTAGATACTCTTGTTCTTGCAATCCTTAGAGATAAGAGGCATAAGACTTTGCAAACTCCCTTTTAG

mRNA sequence

ATGTCTCTCCTAAGAAAGATTCTATTTAAGAAGGCTCCAACAAAGGAGCTTAGTCAACATGAAGTAGAGGAGCAACATAAAGCTTCCTCTAATGATGTCAATCTCACTAATGAATATTTGCAAATAGCAAAGATTGAGCATCAACTTCAGAATTGGAGACTACCCAAATTAGATACAAAAGAAATTTTCGCACATAGCACCTTTAGTTTCAAAGAAAATTTGCGTGTCAAAATAGTCGAAAGAAAAATACCAGTCTACGGAAGCATAGATTCAATTCAATTATTTCCAAGAGATGATATCTTAAAATATAGGAGCGAATTTGAATTTCTTCACGTAGGAGCAGTGCAAGTGGCACTAAGACCAATGTTTAGATCAGTATTAGATACTCTTGTTCTTGCAATCCTTAGAGATAAGAGGCATAAGACTTTGCAAACTCCCTTTTAG

Coding sequence (CDS)

ATGTCTCTCCTAAGAAAGATTCTATTTAAGAAGGCTCCAACAAAGGAGCTTAGTCAACATGAAGTAGAGGAGCAACATAAAGCTTCCTCTAATGATGTCAATCTCACTAATGAATATTTGCAAATAGCAAAGATTGAGCATCAACTTCAGAATTGGAGACTACCCAAATTAGATACAAAAGAAATTTTCGCACATAGCACCTTTAGTTTCAAAGAAAATTTGCGTGTCAAAATAGTCGAAAGAAAAATACCAGTCTACGGAAGCATAGATTCAATTCAATTATTTCCAAGAGATGATATCTTAAAATATAGGAGCGAATTTGAATTTCTTCACGTAGGAGCAGTGCAAGTGGCACTAAGACCAATGTTTAGATCAGTATTAGATACTCTTGTTCTTGCAATCCTTAGAGATAAGAGGCATAAGACTTTGCAAACTCCCTTTTAG

Protein sequence

MSLLRKILFKKAPTKELSQHEVEEQHKASSNDVNLTNEYLQIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDILKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRHKTLQTPF

Homology

[Close]

BLAST of Clc11G06265 vs. NCBI nr
Match: TYK04698.1 (polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16
Identity = 39/99 (39.39%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + 
Sbjct: 53  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKLLPKETLF 112

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Sbjct: 113 KVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRH 151

[Close]

BLAST of Clc11G06265 vs. NCBI nr
Match: XP_016900528.1 (PREDICTED: uncharacterized protein LOC107990934 [Cucumis melo])

HSP 1 Score: 96.3 bits (238), Expect = 2.4e-16
Identity = 39/99 (39.39%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + 
Sbjct: 13  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKLLPKETLF 72

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Sbjct: 73  KVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRH 111

[Close]

BLAST of Clc11G06265 vs. NCBI nr
Match: KAE8653180.1 (hypothetical protein Csa_019682, partial [Cucumis sativus])

HSP 1 Score: 95.1 bits (235), Expect = 5.3e-16
Identity = 40/101 (39.60%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 41  QIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDI 100
           Q+A+IE++L+NW +PKL+ KE++  +TF+F +   + I E  + +     +++L P + +
Sbjct: 44  QLAQIENRLKNWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETL 103

Query: 101 LKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRHK 142
            + R +F++LH+  VQVAL+P+FR  LD  V   LRDKRH+
Sbjct: 104 FRSREKFKYLHIECVQVALKPLFREGLDVSVYLALRDKRHR 144

[Close]

BLAST of Clc11G06265 vs. NCBI nr
Match: TYK28080.1 (movement protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +L
Sbjct: 52  LAQVENRLKNWSIPKLEASQVYRINTFNFSQQDVILITEENVAMKDEFTAIKLLPEETLL 111

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Sbjct: 112 KVRERFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of Clc11G06265 vs. NCBI nr
Match: TYJ98087.1 (Enzymatic polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 94.0 bits (232), Expect = 1.2e-15
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +L
Sbjct: 52  LAQVENRLKNWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLL 111

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Sbjct: 112 KVRERFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of Clc11G06265 vs. ExPASy TrEMBL
Match: A0A5D3C0A5 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold676G00190 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 39/99 (39.39%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + 
Sbjct: 53  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKLLPKETLF 112

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Sbjct: 113 KVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRH 151

[Close]

BLAST of Clc11G06265 vs. ExPASy TrEMBL
Match: A0A1S4DX30 (uncharacterized protein LOC107990934 OS=Cucumis melo OX=3656 GN=LOC107990934 PE=4 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 1.1e-16
Identity = 39/99 (39.39%), Postives = 69/99 (69.70%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +   + +I+L P++ + 
Sbjct: 13  LAQVENRLKNWSIPKLEANQVYKINTFNFSQQHVIVITEENVAMKDELTAIKLLPKETLF 72

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K + +F++LH+G VQVAL+P+FR  LD LV   LRDKRH
Sbjct: 73  KVKEKFKYLHIGCVQVALKPLFREGLDVLVYLALRDKRH 111

[Close]

BLAST of Clc11G06265 vs. ExPASy TrEMBL
Match: A0A0A0M024 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.6e-16
Identity = 40/101 (39.60%), Postives = 68/101 (67.33%), Query Frame = 0


Query: 41  QIAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDI 100
           Q+A+IE++L+NW +PKL+ KE++  +TF+F +   + I E  + +     +++L P + +
Sbjct: 44  QLAQIENRLKNWSIPKLEAKEVYRINTFNFSQQDMIVITEENVAMKDEFTTVKLLPEETL 103

Query: 101 LKYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRHK 142
            + R +F++LH+  VQVAL+P+FR  LD  V   LRDKRH+
Sbjct: 104 FRSREKFKYLHIECVQVALKPLFREGLDVSVYLALRDKRHR 144

[Close]

BLAST of Clc11G06265 vs. ExPASy TrEMBL
Match: A0A5D3BG41 (Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold565G00200 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.7e-16
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +L
Sbjct: 52  LAQVENRLKNWSIPKLEASQVYKINTFNFSQQDIIVITEENVAMKDEFTAIKLLPEETLL 111

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Sbjct: 112 KVRERFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRH 150

[Close]

BLAST of Clc11G06265 vs. ExPASy TrEMBL
Match: A0A5D3DXV6 (Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003440 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 5.7e-16
Identity = 40/99 (40.40%), Postives = 66/99 (66.67%), Query Frame = 0


Query: 42  IAKIEHQLQNWRLPKLDTKEIFAHSTFSFKENLRVKIVERKIPVYGSIDSIQLFPRDDIL 101
           +A++E++L+NW +PKL+  +++  +TF+F +   + I E  + +     +I+L P + +L
Sbjct: 52  LAQVENRLKNWSIPKLEASQVYRINTFNFSQQDVILITEENVAMKDEFTAIKLLPEETLL 111

Query: 102 KYRSEFEFLHVGAVQVALRPMFRSVLDTLVLAILRDKRH 141
           K R  F++LH+G VQVAL+P+FR  LD  V   LRDKRH
Sbjct: 112 KVRERFKYLHIGCVQVALKPLFREGLDVPVYLALRDKRH 150

The following BLAST results are available for this feature:

BLAST of Clc11G06265 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK04698.1	2.4e-16	39.39	polyprotein [Cucumis melo var. makuwa]	[more]
XP_016900528.1	2.4e-16	39.39	PREDICTED: uncharacterized protein LOC107990934 [Cucumis melo]	[more]
KAE8653180.1	5.3e-16	39.60	hypothetical protein Csa_019682, partial [Cucumis sativus]	[more]
TYK28080.1	1.2e-15	40.40	movement protein [Cucumis melo var. makuwa]	[more]
TYJ98087.1	1.2e-15	40.40	Enzymatic polyprotein [Cucumis melo var. makuwa]	[more]

BLAST of Clc11G06265 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G06265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C0A5	1.1e-16	39.39	Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold676G00190 PE...	[more]
A0A1S4DX30	1.1e-16	39.39	uncharacterized protein LOC107990934 OS=Cucumis melo OX=3656 GN=LOC107990934 PE=...	[more]
A0A0A0M024	2.6e-16	39.60	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G434190 PE=4 SV=1	[more]
A0A5D3BG41	5.7e-16	40.40	Enzymatic polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold56...	[more]
A0A5D3DXV6	5.7e-16	40.40	Movement protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold384G003...	[more]

BLAST of Clc11G06265 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR028919	Viral movement protein	PFAM	PF01107	MP	coord: 87..144 e-value: 2.9E-5 score: 23.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G06265.1	Clc11G06265.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding