Clc11G04860 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCCAAACCCATCCCAAAACCCTAGAAAATTTAATTATTGAGAATACTTCCTTTTTTATATATAAAAATAAAAATAAAAATAAAATATTTATGATAAGTATAGTTCCAATAATTAAATAATTTAATGTTTTGACCCAGAAATATTTGTCTATAAAATGGAAAACCAACCATGGTTAAAACCCAAAAAAAAGAATATAACATTGCTTCTGCCTTCATCTGTTGCGAGACAAACACATATGAACCTTTCTGTTGCTTTCTTCCTTCTCCTAATTTCTCTTCTCCTGGTAAGTTCTTCATCTTTCCTTTTTTTCCTTGAATTTTTTTTTAGATTTTTTTGAATATTTATACCATCATAAATCATTGGATCATATTTCTTATAATATACTTTTAATTTTTTTAAAAAAAAAAACAAAAACAAAGAACCCCTTTGGGCTTTTTGTGTTGATTTTAATATGATTTTGAGTTCCTTTTGTTGAATTTTTGTGTTATTAATCTCAAGAAGATGTTTCTATCTCTCACCCTCCAATTTTTTTAAATTACAAAACAGAAAAGGGAGTTTCTTGTTCTCTGATATATAGTTTGTCAAGAAACAGATTTATGTAGATTTCTTTCTTAATTTTCTTGAGGCAAACAGCCAGTTTTCAAAAACAATAATAATAACAATAATTGTAAAAGAAATAATCATCTGGGTATTAGTTTTTTTTTCTTTTTTTTTTTTTTTTTAGTGATTTACTCAGAAACCTAAAAATAAATAATTTAGGCTCTATTGTGTAACGATTTTTTTTTTTTAATGTTTTCTATTATTTTAATTTATGTTTTTCATTATTCTTAAAAAAAATTATGCTTGTCATATTATGATTTTTACATTTTTTAAGAAACTAGTTAAATTTTTAAATTTGATTCCATTTTTGGAACTAGATTTTTTTAGTTTCTCAATTTTAATTTTTGAAAATATTGATAGAAAAAGTGGATGACAACGAGAAGAAACAAATAGGTAGAAATACTGTTTATAAACTTAATTTTCAAAAATAAAACATTAAGACACCGTTTGGTAACAATTCGTTATTTATTTATTTATTTTAAATCAAGCATATTTTTTCTACATTTTTTATAATGATTTGCATATTTGTTAATTACAATGGTTGAATTCTTAGTCAAATTCCAAAAACTAAAACAAAGTTTTACAAGCTACTTTTTTTTTTTTTTTTTTAGTTTTCAAAATTTGGCTTTATTTTTTAAATCATTAGTAAAAAATAGACAACAAATGAAGAAATTTGGAGGTGGGAGTAGTGTCTATAGACTAAATTTTCAAAAACAAAAATAAAAAACGAAATGGTTACCAAACATGGCTTAAGATATCATTTGCTAACCATTCGGTTTTGGTTTTTAAAAATTATGTTTGTTTTTCACGATTTGTTTCCTATGTTTTTCATCTTTTCCTATAACTAAACACTTGAATTCTTTTTTTCAAAAAAAAAAAAAAAAAAAAACTTTTGGACATGGGAGGGATCAATCCGAATACCTCAATTATATGGACAAATGCATTCTTTAACACCCTCTATTACACTCCCTATGCAATACCAAAAGAAGCTTAAAATAAAACACAAGTTTTTAAAATTATTATTATTTTTTTTTTTCAAAACTTAGTTTGGTTTTTAAAATGTCGTTGAAAATATAAATAACAAACCAAAAAAAAACAATGGATAAAAGTTACCAAACAAACTTAAATAATTACGATCTATATCTTACAAATGTTTTTAAAAAGAGAAACAAAAAAGAATTTTTGTTTTCGTCGACAAAATATATAAACTAAGAGAAAACAAACATAATTAAAAATCAAACCGAAATGGTAACAAAAGGAGACGAAATAAATGATTATAATTTGATTTGTTTGGGGATAACAGTTTGGAGATGTAAGCCATGGAAGCAAGAAGGAAGAAGGAGAATACTGGAAAAAGATAATGAAAGATGAAGCAATTCCAGAGATGTTAAAAGAGCTTTTATTGGATAATGATAATTCAATGGTTGTGGACAACAACAACAACCAAAAGGAGCATTTTATGACCAATTTTGATCCTCATCCAAATGCTATAATTTACCATGCCCATTCCCATGCTCATACCTCCACTCATACCAAAATTAACCCCACTCTTCCCAATTTATCCCCATAAAATCTTCTTAATTTCCCATATATATATATATATATTCCTAATTGTCAACTCCCTTATCTTTTCTGTAAATTAATATATTTAGTGTGTGTTTTTTTTCATATATATACCCTCCAACTTTGTACTTTGTTTAAAAAAAAATTTATATAATCTTATTATTGACATTTCAAAAGTATTACAATGTATGGCAATGACGTAAAACGATGTGGTGATGTAAATTTTCGTTATAAATTATTGTTGCATATAATATACCATTTTTATATTTTGGTTTTGAAAGGATACGAGTATTTTTTAAATAAATGGTAAAGTTTAAAGTATATTCAACTTATAATTCTAGGTTTGGGTGTTTAAATTATTGTTATTCTATTTGAGAAGTATATATGTGCAAATTTATCCGTTCTTAAATTCTAGATACGTGGTTACTAT CCCAAACCCATCCCAAAACCCTAGAAAATTTAATTATTGAGAATACTTCCTTTTTTATATATAAAAATAAAAATAAAAATAAAATATTTATGATAAGTATAGTTCCAATAATTAAATAATTTAATGTTTTGACCCAGAAATATTTGTCTATAAAATGGAAAACCAACCATGGTTAAAACCCAAAAAAAAGAATATAACATTGCTTCTGCCTTCATCTGTTGCGAGACAAACACATATGAACCTTTCTGTTGCTTTCTTCCTTCTCCTAATTTCTCTTCTCCTGTTTGGAGATGTAAGCCATGGAAGCAAGAAGGAAGAAGGAGAATACTGGAAAAAGATAATGAAAGATGAAGCAATTCCAGAGATGTTAAAAGAGCTTTTATTGGATAATGATAATTCAATGGTTGTGGACAACAACAACAACCAAAAGGAGCATTTTATGACCAATTTTGATCCTCATCCAAATGCTATAATTTACCATGCCCATTCCCATGCTCATACCTCCACTCATACCAAAATTAACCCCACTCTTCCCAATTTATCCCCATAAAATCTTCTTAATTTCCCATATATATATATATATATTCCTAATTGTCAACTCCCTTATCTTTTCTGTAAATTAATATATTTAGTGTGTGTTTTTTTTCATATATATACCCTCCAACTTTGTACTTTGTTTAAAAAAAAATTTATATAATCTTATTATTGACATTTCAAAAGTATTACAATGTATGGCAATGACGTAAAACGATGTGGTGATGTAAATTTTCGTTATAAATTATTGTTGCATATAATATACCATTTTTATATTTTGGTTTTGAAAGGATACGAGTATTTTTTAAATAAATGGTAAAGTTTAAAGTATATTCAACTTATAATTCTAGGTTTGGGTGTTTAAATTATTGTTATTCTATTTGAGAAGTATATATGTGCAAATTTATCCGTTCTTAAATTCTAGATACGTGGTTACTAT ATGGAAAACCAACCATGGTTAAAACCCAAAAAAAAGAATATAACATTGCTTCTGCCTTCATCTGTTGCGAGACAAACACATATGAACCTTTCTGTTGCTTTCTTCCTTCTCCTAATTTCTCTTCTCCTGTTTGGAGATGTAAGCCATGGAAGCAAGAAGGAAGAAGGAGAATACTGGAAAAAGATAATGAAAGATGAAGCAATTCCAGAGATGTTAAAAGAGCTTTTATTGGATAATGATAATTCAATGGTTGTGGACAACAACAACAACCAAAAGGAGCATTTTATGACCAATTTTGATCCTCATCCAAATGCTATAATTTACCATGCCCATTCCCATGCTCATACCTCCACTCATACCAAAATTAACCCCACTCTTCCCAATTTATCCCCATAA MENQPWLKPKKKNITLLLPSSVARQTHMNLSVAFFLLLISLLLFGDVSHGSKKEEGEYWKKIMKDEAIPEMLKELLLDNDNSMVVDNNNNQKEHFMTNFDPHPNAIIYHAHSHAHTSTHTKINPTLPNLSP Homology
BLAST of Clc11G04860 vs. NCBI nr
Match: XP_038901980.1 (organ-specific protein P4 [Benincasa hispida]) HSP 1 Score: 147.9 bits (372), Expect = 6.1e-32 Identity = 79/106 (74.53%), Postives = 90/106 (84.91%), Query Frame = 0
BLAST of Clc11G04860 vs. NCBI nr
Match: XP_004148852.1 (uncharacterized protein LOC101213460 [Cucumis sativus] >KGN61786.1 hypothetical protein Csa_006572 [Cucumis sativus]) HSP 1 Score: 137.5 bits (345), Expect = 8.3e-29 Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Clc11G04860 vs. NCBI nr
Match: XP_022986644.1 (organ-specific protein S2-like [Cucurbita maxima]) HSP 1 Score: 124.4 bits (311), Expect = 7.2e-25 Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0
BLAST of Clc11G04860 vs. NCBI nr
Match: XP_022944721.1 (organ-specific protein P4-like [Cucurbita moschata]) HSP 1 Score: 122.5 bits (306), Expect = 2.7e-24 Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = 0
BLAST of Clc11G04860 vs. NCBI nr
Match: KAG6571127.1 (hypothetical protein SDJN03_30042, partial [Cucurbita argyrosperma subsp. sororia] >KAG7010938.1 hypothetical protein SDJN02_27736, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 122.1 bits (305), Expect = 3.6e-24 Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = 0
BLAST of Clc11G04860 vs. ExPASy Swiss-Prot
Match: P17772 (Organ-specific protein S2 OS=Pisum sativum OX=3888 PE=2 SV=1) HSP 1 Score: 44.7 bits (104), Expect = 9.5e-04 Identity = 33/84 (39.29%), Postives = 50/84 (59.52%), Query Frame = 0
BLAST of Clc11G04860 vs. ExPASy TrEMBL
Match: A0A0A0LP62 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G245500 PE=4 SV=1) HSP 1 Score: 137.5 bits (345), Expect = 4.0e-29 Identity = 79/109 (72.48%), Postives = 90/109 (82.57%), Query Frame = 0
BLAST of Clc11G04860 vs. ExPASy TrEMBL
Match: A0A6J1JGL9 (organ-specific protein S2-like OS=Cucurbita maxima OX=3661 GN=LOC111484322 PE=4 SV=1) HSP 1 Score: 124.4 bits (311), Expect = 3.5e-25 Identity = 70/114 (61.40%), Postives = 83/114 (72.81%), Query Frame = 0
BLAST of Clc11G04860 vs. ExPASy TrEMBL
Match: A0A6J1FYV4 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111449094 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 1.3e-24 Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = 0
BLAST of Clc11G04860 vs. ExPASy TrEMBL
Match: A0A6J1G7K5 (organ-specific protein P4-like OS=Cucurbita moschata OX=3662 GN=LOC111451468 PE=4 SV=1) HSP 1 Score: 105.9 bits (263), Expect = 1.3e-19 Identity = 58/100 (58.00%), Postives = 72/100 (72.00%), Query Frame = 0
BLAST of Clc11G04860 vs. ExPASy TrEMBL
Match: A0A6J1L3N5 (organ-specific protein P4-like OS=Cucurbita maxima OX=3661 GN=LOC111499606 PE=4 SV=1) HSP 1 Score: 103.2 bits (256), Expect = 8.4e-19 Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 0
BLAST of Clc11G04860 vs. TAIR 10
Match: AT1G49310.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: LP.04 four leaves visible, petal differentiation and expansion stage; Has 11 Blast hits to 11 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 11; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 2.1e-06 Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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