Clc11G04780 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G04780
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	transcription factor RADIALIS-like
Location	ClcChr11: 4562196 .. 4564370 (-)
RNA-Seq Expression	Clc11G04780
Synteny	Clc11G04780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCAGTTCCATCTCCTCATCCTCTCATGACTCTGCCTCTTGGACTCCCAACCAAAACAAAGCCTTTGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGTGTTCCTTTCCCTAAGTACACCTCCGCTTCTGCCCCCGAAACCTCCAATGGCAACATCAACGACCAAGAACAAAGGTACCTCTCTTTTGTCTAGTATAAACTTTTTTTTTTTTTTTATCCAGTATAAATGTCTTATCTACTAAATTATATTTAAAATTTTTTTGAATTATATAATTTTTTACGATAGAAAAGTCTAACCTTCTAAGTCGCTTTCGACTCACTTTTATTTTGGTTCGCTTTTGAGATTCTCTATGTGTATCTCAATTGTTTTTTATCTTTTTCTTTTCAAAAACTTCCAAACTTAATTGCCATCTCATAAGAGAAGAACTCCTCTTTACTTTTTACATTTTGTGTGTTCTTTAGTAAACCATAATCCTTTTTTTGTCTTTTATTAAAAAAAAAAAAGTTGTACTCATCTTCTTCCTCCAATCACATTGAAAAAAATATGAAAAATTGTCACGTACCAAATTGTAATCAAACTACTTATTGAGTGGGTTGTACGAAGATGGATATAGTCCGAGATGGAGAAGATATATATATATATTTAAAAAAAAAAAAGAAAGAAAATTATTTGAAAGCTGGTTTTTGAGGGTATTGGGTTTAAGAAAAAGAGAAAAGCATGCAATCCAATCATACCTCAATTGGTAAATGCAATGTTTTCCGATTTGTTGATTTTTAAAATTGAAGTCAACAGTTTACGAGAAACCCAGGCGTGCCACTCACGTGCCTTGTCCATAGGCTGATTAATAGCAATAATTGCATTTGTATTGTATATATTATAATCTATTAATTGGTTATCTAATCTTATACTAAAAGCAACGTAATTAATTGTTTAATGTTGATATTTTCTTTTGCTGACAAATATCCAACTTGTCGGATTGCATTGAAACAATCCCATTACTCGAGAACATTAGGGGATTGTTTCAATAATAATAAAATTAATTTTGAATTTTTTTGATTTCTTTCCATGTTTTTGGGGTTTTTAATTTTTTTTTAATTACTTTTTAAAATAATTTACTAAATTTCCAAAATAAGAATTAGTTTTCTCAAAAGAAGATTAAAATTTGTTAGGATTTGAAGAACGTTTTTAAAAGTAAAATTGAAAAATGAAGAAAATGGATATATATATATATATATATATATATATATATATATAGTTTTTTCAAAAATGATTCCCTTCAAAACTACTCCAAAATTCAAAATGGATATCCAAACTAATTTATTAATAATTATTTTGTTTTATATAAAAATAAAGTATCAACAAGAAGGGATGATAAACATCCATATGAGTAGATGAGGTGTCTTTTCTATAGTAAATTAAAAATAAATAAGTATTGTATTAATTTAAATCACTAAAATTTTGGTAAATTTTAGTTTTCGGTTGTCTATTTTTGGCTATATATATTTGGTTTATTGTTTCTAGTATTTTAAGAGCTAAAAGCATGAATATGTTTTATAAGAACATAAAAAGAAATATTGTCTTAATCTAAATTACTAAAGTCTTGTTTAACTAACGTTTGTTTTTAATTTCTTATATATATACATACTACAAAAAAAATTACAATATAATTTTTTTTATTGTATTTACCGGAATGTTCCCTCCATGTACTACGAGCTCTAGAAGCAATCCTTAAACATGATCAAAATATCTATTTTAGCCTTCAAATTTAAAACTATACCCATTTTAGTTACAATTATTTTATTGTCAATTGCTACCTCATTCATGACCTATTTAGTGTATGATATTTCAATATATGTTTACGTTAATACACATACTTGAAGTCGTGTCATCATTTGTTAAACAATAGAGAGTAAAACGAGGAGAAAGAATCAAAATAATTATTGGTTAAAATGTTTTAGGATAAACATGTAAAGTGTAAATTAAGTTTATGAGAATTGCAATCATGGGTTTGACTCATTGAATTAATGCAGGATGAGAAACCTGAAACTTCACTAA

mRNA sequence

ATGGCTTCCAGTTCCATCTCCTCATCCTCTCATGACTCTGCCTCTTGGACTCCCAACCAAAACAAAGCCTTTGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGTGTTCCTTTCCCTAAGTACACCTCCGCTTCTGCCCCCGAAACCTCCAATGGCAACATCAACGACCAAGAACAAAGGATGAGAAACCTGAAACTTCACTAA

Coding sequence (CDS)

ATGGCTTCCAGTTCCATCTCCTCATCCTCTCATGACTCTGCCTCTTGGACTCCCAACCAAAACAAAGCCTTTGAAAGGGCCTTGGCTGTCTTTGACAAGGACACCCCTGATCGCTGGCTCAATGTCGCCAACGCCGTCGGCGGTGGCAAGACCCCCGACGAAGTCAAGAGACATTTCGACCTTCTCGTCGAAGATGTCAAACACATTGAATCTGGCCGTGTTCCTTTCCCTAAGTACACCTCCGCTTCTGCCCCCGAAACCTCCAATGGCAACATCAACGACCAAGAACAAAGGATGAGAAACCTGAAACTTCACTAA

Protein sequence

MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH

Homology

[Close]

BLAST of Clc11G04780 vs. NCBI nr
Match: XP_038902123.1 (protein RADIALIS-like 2 [Benincasa hispida])

HSP 1 Score: 186.4 bits (472), Expect = 1.2e-43
Identity = 91/99 (91.92%), Postives = 92/99 (92.93%), Query Frame = 0


Query: 8   SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVK 67
           SSSHDS SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKT DEVKRHFDLLVEDVK
Sbjct: 5   SSSHDSGSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTADEVKRHFDLLVEDVK 64

Query: 68  HIESGRVPFPKYTSASAPETS-NGNINDQEQRMRNLKLH 106
           HIESGRVPFP YTS S P TS NGN+NDQEQRMRNLKLH
Sbjct: 65  HIESGRVPFPNYTSTSTPATSDNGNLNDQEQRMRNLKLH 103

[Close]

BLAST of Clc11G04780 vs. NCBI nr
Match: XP_008460938.1 (PREDICTED: protein RADIALIS-like 2 [Cucumis melo])

HSP 1 Score: 181.4 bits (459), Expect = 4.0e-42
Identity = 95/109 (87.16%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 4   SSISSSSHDSA--SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDL 63
           +SISSSSHDSA  SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 
Sbjct: 2   ASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDR 61

Query: 64  LVEDVKHIESGRVPFPKYT----SASAPET-SNGNINDQEQRMRNLKLH 106
           LVEDVKHIESGRVPFPKYT    S+SAP T SN NI DQEQRMRN+KLH
Sbjct: 62  LVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110

[Close]

BLAST of Clc11G04780 vs. NCBI nr
Match: XP_004148844.1 (transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein Csa_006459 [Cucumis sativus])

HSP 1 Score: 176.0 bits (445), Expect = 1.7e-40
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 6   ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVED 65
           ++S S  S+SWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD LVED
Sbjct: 1   MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED 60

Query: 66  VKHIESGRVPFPKYT-SASAPETSNGNINDQEQRMRNLKLH 106
           VKHIESGRVPFPKYT S+S+P TSN NI DQEQRMRN+KLH
Sbjct: 61  VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of Clc11G04780 vs. NCBI nr
Match: XP_023513343.1 (protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 172.6 bits (436), Expect = 1.9e-39
Identity = 85/98 (86.73%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 8   SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVK 67
           SSSH S+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVK
Sbjct: 5   SSSHHSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVK 64

Query: 68  HIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL 105
           HIESG VPFP Y+S ASA ETSN N++DQEQRMRNLKL
Sbjct: 65  HIESGHVPFPNYSSTASASETSNANVSDQEQRMRNLKL 102

[Close]

BLAST of Clc11G04780 vs. NCBI nr
Match: XP_023515007.1 (transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171.0 bits (432), Expect = 5.4e-39
Identity = 84/98 (85.71%), Postives = 89/98 (90.82%), Query Frame = 0


Query: 8   SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVK 67
           SSSHDS SW+PNQNKAFERALAVFDKDTPDRWLNVA AV G KT DEVKRHF+LLVEDVK
Sbjct: 5   SSSHDSTSWSPNQNKAFERALAVFDKDTPDRWLNVAKAV-GDKTADEVKRHFELLVEDVK 64

Query: 68  HIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH 106
           HIESG VPFP YTS+SAP TS+ NINDQEQRMRN+KLH
Sbjct: 65  HIESGLVPFPNYTSSSAPRTSHDNINDQEQRMRNMKLH 101

[Close]

BLAST of Clc11G04780 vs. ExPASy Swiss-Prot
Match: Q9SIJ5 (Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.4e-27
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS S+  SS+ S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1   MASGSM--SSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKL 105
           LLV D++ IE+G VPFP Y + +   ++ G + D+E+RMR++KL
Sbjct: 61  LLVRDIESIENGHVPFPDYKTTTG-NSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of Clc11G04780 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 9.3e-26
Identity = 60/104 (57.69%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASSS+SS S  S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++
Sbjct: 1   MASSSMSSQS--SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKL 105
           LLV+D+  IE+G VPFP Y ++     +NG ++ +E+RMRN++L
Sbjct: 61  LLVQDINSIENGHVPFPNYRTSGG--CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of Clc11G04780 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 4.6e-25
Identity = 55/99 (55.56%), Postives = 74/99 (74.75%), Query Frame = 0


Query: 6   ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVED 65
           ++S+      W+  +NKAFERALAV+DKDTPDRW NVA AV  G+TP+EVK+H+++LVED
Sbjct: 1   MASTRGSGRPWSAKENKAFERALAVYDKDTPDRWANVARAV-EGRTPEEVKKHYEILVED 60

Query: 66  VKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKL 105
           +K+IESG+VPFP Y       T+ GN+   E+R RNLK+
Sbjct: 61  IKYIESGKVPFPNY------RTTGGNMKTDEKRFRNLKI 92

[Close]

BLAST of Clc11G04780 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.6e-23
Identity = 63/105 (60.00%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS+S SS S     WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D
Sbjct: 1   MASNSRSSIS----PWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-MRNLKL 105
           +LVED+ +IE+GRVP P Y +    E+++ +IND + R M+NLK+
Sbjct: 61  ILVEDLINIETGRVPLPNYKTF---ESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Clc11G04780 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 9.6e-23
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASSS+SSSS    SWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D
Sbjct: 1   MASSSMSSSS----SWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-MRNLKL 105
           +LVED+ +IE   VP PKY +      S G I+D + R M+N+++
Sbjct: 61  ILVEDLMNIEQDLVPLPKYKTVDVGSKSRG-IDDFDLRLMKNMRI 99

[Close]

BLAST of Clc11G04780 vs. ExPASy TrEMBL
Match: A0A1S3CDK8 (protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1)

HSP 1 Score: 181.4 bits (459), Expect = 1.9e-42
Identity = 95/109 (87.16%), Postives = 98/109 (89.91%), Query Frame = 0


Query: 4   SSISSSSHDSA--SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDL 63
           +SISSSSHDSA  SWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 
Sbjct: 2   ASISSSSHDSASSSWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDR 61

Query: 64  LVEDVKHIESGRVPFPKYT----SASAPET-SNGNINDQEQRMRNLKLH 106
           LVEDVKHIESGRVPFPKYT    S+SAP T SN NI DQEQRMRN+KLH
Sbjct: 62  LVEDVKHIESGRVPFPKYTSSSSSSSAPRTSSNANIKDQEQRMRNMKLH 110

[Close]

BLAST of Clc11G04780 vs. ExPASy TrEMBL
Match: A0A0A0LL58 (MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 SV=1)

HSP 1 Score: 176.0 bits (445), Expect = 8.1e-41
Identity = 86/101 (85.15%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 6   ISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVED 65
           ++S S  S+SWTPNQNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVKRHFD LVED
Sbjct: 1   MASISSSSSSWTPNQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKRHFDRLVED 60

Query: 66  VKHIESGRVPFPKYT-SASAPETSNGNINDQEQRMRNLKLH 106
           VKHIESGRVPFPKYT S+S+P TSN NI DQEQRMRN+KLH
Sbjct: 61  VKHIESGRVPFPKYTSSSSSPTTSNANIKDQEQRMRNMKLH 101

[Close]

BLAST of Clc11G04780 vs. ExPASy TrEMBL
Match: A0A6J1JBS7 (protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 84/98 (85.71%), Postives = 87/98 (88.78%), Query Frame = 0


Query: 8   SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVK 67
           SSSH S+SWTP +NKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVK
Sbjct: 5   SSSHHSSSWTPKENKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVK 64

Query: 68  HIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL 105
           HIE G VPFP Y+S ASA  TSN NINDQEQRMRNLKL
Sbjct: 65  HIEFGHVPFPNYSSTASATGTSNANINDQEQRMRNLKL 102

[Close]

BLAST of Clc11G04780 vs. ExPASy TrEMBL
Match: A0A6J1FXX9 (protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 1.3e-38
Identity = 84/98 (85.71%), Postives = 88/98 (89.80%), Query Frame = 0


Query: 8   SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVK 67
           +SSH S+SWTP QNKAFERALAVFDKDTPDRWLNVA AVGGGKTPDEVK HFDLLVEDVK
Sbjct: 5   ASSHRSSSWTPKQNKAFERALAVFDKDTPDRWLNVAKAVGGGKTPDEVKTHFDLLVEDVK 64

Query: 68  HIESGRVPFPKYTS-ASAPETSNGNINDQEQRMRNLKL 105
           HIESG VPFP Y+S ASA  TSN NINDQEQRMR+LKL
Sbjct: 65  HIESGHVPFPNYSSTASASGTSNANINDQEQRMRDLKL 102

[Close]

BLAST of Clc11G04780 vs. ExPASy TrEMBL
Match: A0A6J1CYR5 (protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 4.6e-36
Identity = 80/98 (81.63%), Postives = 86/98 (87.76%), Query Frame = 0


Query: 8   SSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFDLLVEDVK 67
           SS   S SWTPNQNKAFERALAVFDKDTPDRW NVANAV GGKT DEVKRHFDLLVEDVK
Sbjct: 5   SSRDSSGSWTPNQNKAFERALAVFDKDTPDRWHNVANAV-GGKTADEVKRHFDLLVEDVK 64

Query: 68  HIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKLH 106
           HIESGR+PFP YT A+   +SNGN+ND+E+RMRNLKLH
Sbjct: 65  HIESGRIPFPNYT-ATTTGSSNGNVNDEEKRMRNLKLH 100

[Close]

BLAST of Clc11G04780 vs. TAIR 10
Match: AT2G21650.1 (Homeodomain-like superfamily protein )

HSP 1 Score: 120.9 bits (302), Expect = 6.0e-28
Identity = 62/104 (59.62%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS S+  SS+ S SWT  QNKAFERALAV+D+DTPDRW NVA AV GGKTP+E KR +D
Sbjct: 1   MASGSM--SSYGSGSWTVKQNKAFERALAVYDQDTPDRWHNVARAV-GGKTPEEAKRQYD 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKL 105
           LLV D++ IE+G VPFP Y + +   ++ G + D+E+RMR++KL
Sbjct: 61  LLVRDIESIENGHVPFPDYKTTTG-NSNRGRLRDEEKRMRSMKL 100

[Close]

BLAST of Clc11G04780 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 117.5 bits (293), Expect = 6.6e-27
Identity = 60/104 (57.69%), Postives = 80/104 (76.92%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASSS+SS S  S SWT  QNKAFE+ALA +D+DTP+RW NVA  V GGKT +EVKRH++
Sbjct: 1   MASSSMSSQS--SGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVV-GGKTTEEVKRHYE 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQRMRNLKL 105
           LLV+D+  IE+G VPFP Y ++     +NG ++ +E+RMRN++L
Sbjct: 61  LLVQDINSIENGHVPFPNYRTSGG--CTNGRLSQEEKRMRNMRL 99

[Close]

BLAST of Clc11G04780 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 108.2 bits (269), Expect = 4.0e-24
Identity = 63/105 (60.00%), Postives = 80/105 (76.19%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MAS+S SS S     WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D
Sbjct: 1   MASNSRSSIS----PWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-MRNLKL 105
           +LVED+ +IE+GRVP P Y +    E+++ +IND + R M+NLK+
Sbjct: 61  ILVEDLINIETGRVPLPNYKTF---ESNSRSINDFDTRKMKNLKI 97

[Close]

BLAST of Clc11G04780 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 107.5 bits (267), Expect = 6.8e-24
Identity = 61/105 (58.10%), Postives = 76/105 (72.38%), Query Frame = 0


Query: 1   MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
           MASSS+SSSS    SWT  QNK FERALAV+DKDTPDRW NVA AV G K+ +EVKRH+D
Sbjct: 1   MASSSMSSSS----SWTSKQNKMFERALAVYDKDTPDRWQNVAKAV-GSKSAEEVKRHYD 60

Query: 61  LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR-MRNLKL 105
           +LVED+ +IE   VP PKY +      S G I+D + R M+N+++
Sbjct: 61  ILVEDLMNIEQDLVPLPKYKTVDVGSKSRG-IDDFDLRLMKNMRI 99

[Close]

BLAST of Clc11G04780 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 103.6 bits (257), Expect = 9.9e-23
Identity = 59/98 (60.20%), Postives = 74/98 (75.51%), Query Frame = 0


Query: 1  MASSSISSSSHDSASWTPNQNKAFERALAVFDKDTPDRWLNVANAVGGGKTPDEVKRHFD 60
          MAS+S SS S     WT +QNK FERALAV+DKDTPDRW NVA AV GGKT +EVKRH+D
Sbjct: 1  MASNSRSSIS----PWTFSQNKMFERALAVYDKDTPDRWHNVAKAV-GGKTVEEVKRHYD 60

Query: 61 LLVEDVKHIESGRVPFPKYTSASAPETSNGNINDQEQR 99
          +LVED+ +IE+GRVP P Y +    E+++ +IND + R
Sbjct: 61 ILVEDLINIETGRVPLPNYKTF---ESNSRSINDFDTR 90

The following BLAST results are available for this feature:

BLAST of Clc11G04780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902123.1	1.2e-43	91.92	protein RADIALIS-like 2 [Benincasa hispida]	[more]
XP_008460938.1	4.0e-42	87.16	PREDICTED: protein RADIALIS-like 2 [Cucumis melo]	[more]
XP_004148844.1	1.7e-40	85.15	transcription factor RADIALIS [Cucumis sativus] >KGN61794.1 hypothetical protein...	[more]
XP_023513343.1	1.9e-39	86.73	protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]	[more]
XP_023515007.1	5.4e-39	85.71	transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc11G04780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SIJ5	8.4e-27	59.62	Protein RADIALIS-like 2 OS=Arabidopsis thaliana OX=3702 GN=RL2 PE=2 SV=1	[more]
F4JVB8	9.3e-26	57.69	Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1	[more]
Q58FS3	4.6e-25	55.56	Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1	[more]
Q1A173	5.6e-23	60.00	Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1	[more]
Q8GW75	9.6e-23	58.10	Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1	[more]

BLAST of Clc11G04780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3CDK8	1.9e-42	87.16	protein RADIALIS-like 2 OS=Cucumis melo OX=3656 GN=LOC103499673 PE=4 SV=1	[more]
A0A0A0LL58	8.1e-41	85.15	MYB transcription factor MYB142 OS=Cucumis sativus OX=3659 GN=Csa_2G247060 PE=4 ...	[more]
A0A6J1JBS7	1.3e-38	85.71	protein RADIALIS-like 2 OS=Cucurbita maxima OX=3661 GN=LOC111484324 PE=4 SV=1	[more]
A0A6J1FXX9	1.3e-38	85.71	protein RADIALIS-like 2 OS=Cucurbita moschata OX=3662 GN=LOC111448798 PE=4 SV=1	[more]
A0A6J1CYR5	4.6e-36	81.63	protein RADIALIS-like 2 OS=Momordica charantia OX=3673 GN=LOC111015511 PE=4 SV=1	[more]

BLAST of Clc11G04780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21650.1	6.0e-28	59.62	Homeodomain-like superfamily protein	[more]
AT4G39250.1	6.6e-27	57.69	RAD-like 1	[more]
AT1G75250.2	4.0e-24	60.00	RAD-like 6	[more]
AT1G19510.1	6.8e-24	58.10	RAD-like 5	[more]
AT1G75250.1	9.9e-23	60.20	RAD-like 6	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 12..65 e-value: 0.0016 score: 27.7
None	No IPR available	GENE3D	1.10.10.60		coord: 6..76 e-value: 8.9E-22 score: 78.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 81..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 76..105
None	No IPR available	PANTHER	PTHR43952:SF53	TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED	coord: 1..100
IPR044636	Transcription factor RADIALIS-like	PANTHER	PTHR43952	MYB FAMILY TRANSCRIPTION FACTOR-RELATED	coord: 1..100
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 15..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G04780.1	Clc11G04780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
molecular_function	GO:0003700	DNA-binding transcription factor activity