Clc11G03640 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G03640
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Anaphase-promoting complex
Location	ClcChr11: 3510695 .. 3512013 (+)
RNA-Seq Expression	Clc11G03640
Synteny	Clc11G03640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTGAGAAGACAACCCACCAAGATCGATGTCAAAATCGAGGATAAGGAAGAACTCGAACAACTCCGACAACGCGCCGCCCTCGCCACCGCCTCCACTGACACAACCTCCACCAACTCCTCTCTCCTCCATAACCTCAATCGCAACAAAGACCCGGCCTCCAAAGCTCAGCGACTCGGTATTTCCTCTTGATATCATCCATTCCATATACTTCTCAAATCTCCGATTAGTTGCCCTACTGAACGGCAACCATAGGGGATTTGTCCAATTCTATAACGGCGTTTCCCACTGTGTGATCTGTCTGAAGTCCAGACGCTTCTGATCGACGTCGTTTGTTGAAGAGTCGTGGAAGGCTACTGCTAATTCTGCGATCTTTCGATCGGAGAAGCTTCCATTCTGAAGAGTAAGTGAACTTCTTGTTGGTAATGTAGTAAGCATACCTTTCTTGATTTATTTTATGATGGACATGAGAATTCCTGTAGAATATACTGGACGGATTGAAAGCATTTAGTTTTGAGTTGTATCATCAGATTGTTCTCTACTTGTTCGATTAATGGCATTAGATATAAACATACCCAAATTTTTCAGGGAAAAGGAAAACTCAAGCAATTGTGACTTACTAACAAAAATTCCCAGTTTGAAGATGAAACTAAATTCGTAACCTAATGACTTATTATTGGAGGATGAATGTATAATCAAATACTAAACAAATCCCAGATCAAATAATGACAAAAGAAAGAGCTAATAAACTAGTTCTTAAGATCTTGTTCATGTGATACATTTTGGTTGGTCATTTCTTCCCACTTTTTTCCTATATGTGTTATTGTGCAAGTGTAACGTTCATCTGTATTCCATTGATCTCAAATACTCATTTGTAACCTTAAGTTTATTGACTAAACTCCATTTCTTTACTGATTTTATATGATAAAATGGCTACTGGCATTTTGTTCATCAAGTTTCTGAAAACCCCTTTGTACTGCTTCATTATTACATGACCATGGGTGTATTTTCTGTAGTCTTATTGATAGACTGATATTTAGAAGCTTCTCTGCCTTGGTTTGTGTATGAACTGAGTTGACCTTGAAATTCACCAGTCAAATTATGATATTAGTTAGAAAGACAGCTAGCAAGCAAGTCGAGTAAGACAACTATTATTAAGTTGAGCGAGTTTTTGCTAGTACTAATCAAAGACTAAAACTTAAAGTCCAAATTCTCATAAAGTTGATAGGCACTTATCTATCGTGGATCTCTGTAGTCTTCCTTACAACCGCTACCAATTCTTAAACAGAAAGTTGTATGCTTGCGAAGACCGTTTCTGA

mRNA sequence

ATGCTGAGAAGACAACCCACCAAGATCGATGTCAAAATCGAGGATAAGGAAGAACTCGAACAACTCCGACAACGCGCCGCCCTCGCCACCGCCTCCACTGACACAACCTCCACCAACTCCTCTCTCCTCCATAACCTCAATCGCAACAAAGACCCGGCCTCCAAAGCTCAGCGACTCGACGCTTCTGATCGACGTCGTTTGTTGAAGAGTCGTGGAAGGCTACTGCTAATTCTGCGATCTTTCGATCGGAGAAGCTTCCATTCTGAAGAAAAGTTGTATGCTTGCGAAGACCGTTTCTGA

Coding sequence (CDS)

ATGCTGAGAAGACAACCCACCAAGATCGATGTCAAAATCGAGGATAAGGAAGAACTCGAACAACTCCGACAACGCGCCGCCCTCGCCACCGCCTCCACTGACACAACCTCCACCAACTCCTCTCTCCTCCATAACCTCAATCGCAACAAAGACCCGGCCTCCAAAGCTCAGCGACTCGACGCTTCTGATCGACGTCGTTTGTTGAAGAGTCGTGGAAGGCTACTGCTAATTCTGCGATCTTTCGATCGGAGAAGCTTCCATTCTGAAGAAAAGTTGTATGCTTGCGAAGACCGTTTCTGA

Protein sequence

MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTNSSLLHNLNRNKDPASKAQRLDASDRRRLLKSRGRLLLILRSFDRRSFHSEEKLYACEDRF

Homology

[Close]

BLAST of Clc11G03640 vs. NCBI nr
Match: KAG6586369.1 (Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 79.7 bits (195), Expect = 1.5e-11
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATA------STDTTST-NSSLLHNLNRNKDPA 60
          MLRRQP+KI+VKIEDKEELEQ R+RAA A A      +TDTTS+  +SLLHNLNRNKDP 
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAAAAAAASTTTDTTSSAAASLLHNLNRNKDPT 60

[Close]

BLAST of Clc11G03640 vs. NCBI nr
Match: KGN60724.1 (hypothetical protein Csa_019232 [Cucumis sativus])

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-10
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTNSSLLHNLNRNKDPASKAQRLD 60
          MLRRQPT IDV+IEDKEELEQLR+R A A       ST SSLLHNL+RNKDPASKAQRL 
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA-------STYSSLLHNLSRNKDPASKAQRLG 55

Query: 61 AS 63
           S
Sbjct: 61 IS 55

[Close]

BLAST of Clc11G03640 vs. NCBI nr
Match: OVA19190.1 (Anaphase-promoting complex [Macleaya cordata])

HSP 1 Score: 67.8 bits (164), Expect = 6.1e-08
Identity = 36/65 (55.38%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTN---SSLLHNLNRNKDPASKAQ 60
          MLRR+P+KI+VKIEDKEELE+ R+R+  ++A+T TT+T    ++L+H L+RNKDP++K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

Query: 61 RLDAS 63
          R+  S
Sbjct: 61 RIGLS 65

[Close]

BLAST of Clc11G03640 vs. NCBI nr
Match: PNX80228.1 (hypothetical protein L195_g036225 [Trifolium pratense])

HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTNSSLLHNLNRNKDPASKAQRLD 60
          MLRR+PTKI VKIEDKEELE+ R+R A AT +T TT+  +SLL   +R +DP+SKA R+ 
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRNAAATNTTTTTTGAASLLRQFDRAEDPSSKANRIG 60

Query: 61 AS 63
           S
Sbjct: 61 LS 62

[Close]

BLAST of Clc11G03640 vs. NCBI nr
Match: KAG5564275.1 (hypothetical protein RHGRI_000468 [Rhododendron griersonianum])

HSP 1 Score: 64.3 bits (155), Expect = 6.7e-07
Identity = 37/66 (56.06%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTN---SSLLHNLNR-NKDPASKA 60
          MLRR+P+KI+VK+EDKEELE+ R+R+A A A+T TTS+    +SLLH+ +R +KDP+SK+
Sbjct: 1  MLRRKPSKIEVKVEDKEELEEARKRSAAAAATTSTTSSTTGAASLLHHFDRSSKDPSSKS 60

Query: 61 QRLDAS 63
           R+  S
Sbjct: 61 HRIGLS 66

[Close]

BLAST of Clc11G03640 vs. ExPASy TrEMBL
Match: A0A0A0LFB1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 5.7e-12
Identity = 47/67 (70.15%), Postives = 52/67 (77.61%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALA-----TASTDTTSTNSSLLHNLNRNKDPASK 60
          MLRRQP+KI+VKIEDKEELEQ R+RAA A     T +TD TS   SLLHN+NRNKD ASK
Sbjct: 1  MLRRQPSKIEVKIEDKEELEQARKRAAAAASTTTTTTTDATSAAGSLLHNINRNKDQASK 60

Query: 61 AQRLDAS 63
          AQRL  S
Sbjct: 61 AQRLGIS 67

[Close]

BLAST of Clc11G03640 vs. ExPASy TrEMBL
Match: A0A0A0LI59 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 6.3e-11
Identity = 46/62 (74.19%), Postives = 49/62 (79.03%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTNSSLLHNLNRNKDPASKAQRLD 60
          MLRRQPT IDV+IEDKEELEQLR+R A A       ST SSLLHNL+RNKDPASKAQRL 
Sbjct: 1  MLRRQPTMIDVEIEDKEELEQLRKRPAAA-------STYSSLLHNLSRNKDPASKAQRLG 55

Query: 61 AS 63
           S
Sbjct: 61 IS 55

[Close]

BLAST of Clc11G03640 vs. ExPASy TrEMBL
Match: A0A200R928 (Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.9e-08
Identity = 36/65 (55.38%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTN---SSLLHNLNRNKDPASKAQ 60
          MLRR+P+KI+VKIEDKEELE+ R+R+  ++A+T TT+T    ++L+H L+RNKDP++K Q
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARKRSIASSAATTTTTTTTRAAALIHQLDRNKDPSNKPQ 60

Query: 61 RLDAS 63
          R+  S
Sbjct: 61 RIGLS 65

[Close]

BLAST of Clc11G03640 vs. ExPASy TrEMBL
Match: A0A2K3LNW2 (Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g036225 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.5e-07
Identity = 37/62 (59.68%), Postives = 47/62 (75.81%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQRAALATASTDTTSTNSSLLHNLNRNKDPASKAQRLD 60
          MLRR+PTKI VKIEDKEELE+ R+R A AT +T TT+  +SLL   +R +DP+SKA R+ 
Sbjct: 1  MLRRKPTKIQVKIEDKEELEEARRRNAAATNTTTTTTGAASLLRQFDRAEDPSSKANRIG 60

Query: 61 AS 63
           S
Sbjct: 61 LS 62

[Close]

BLAST of Clc11G03640 vs. ExPASy TrEMBL
Match: A0A371EQJ7 (Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_52824 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 4.2e-07
Identity = 37/65 (56.92%), Postives = 49/65 (75.38%), Query Frame = 0


Query: 1  MLRRQPTKIDVKIEDKEELEQLRQR---AALATASTDTTSTNSSLLHNLNRNKDPASKAQ 60
          MLRR+P+KI+VKIEDKEELE+ R+R   AA  T +T TT+  S+LL  L+R +DP+SKA 
Sbjct: 1  MLRRKPSKIEVKIEDKEELEEARRRNASAATTTTTTTTTTGTSALLRQLDRGEDPSSKAH 60

Query: 61 RLDAS 63
          R+  S
Sbjct: 61 RIGLS 65

The following BLAST results are available for this feature:

BLAST of Clc11G03640 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6586369.1	1.5e-11	71.64	Triphosphate tunnel metalloenzyme 3, partial [Cucurbita argyrosperma subsp. soro...	[more]
KGN60724.1	1.3e-10	74.19	hypothetical protein Csa_019232 [Cucumis sativus]	[more]
OVA19190.1	6.1e-08	55.38	Anaphase-promoting complex [Macleaya cordata]	[more]
PNX80228.1	3.0e-07	59.68	hypothetical protein L195_g036225 [Trifolium pratense]	[more]
KAG5564275.1	6.7e-07	56.06	hypothetical protein RHGRI_000468 [Rhododendron griersonianum]	[more]

BLAST of Clc11G03640 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G03640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LFB1	5.7e-12	70.15	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008650 PE=4 SV=1	[more]
A0A0A0LI59	6.3e-11	74.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G008400 PE=4 SV=1	[more]
A0A200R928	2.9e-08	55.38	Anaphase-promoting complex OS=Macleaya cordata OX=56857 GN=BVC80_8407g9 PE=4 SV=...	[more]
A0A2K3LNW2	1.5e-07	59.68	Uncharacterized protein OS=Trifolium pratense OX=57577 GN=L195_g036225 PE=4 SV=1	[more]
A0A371EQJ7	4.2e-07	56.92	Uncharacterized protein (Fragment) OS=Mucuna pruriens OX=157652 GN=CR513_52824 P...	[more]

BLAST of Clc11G03640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018860	Anaphase-promoting complex, subunit CDC26	PFAM	PF10471	ANAPC_CDC26	coord: 1..58 e-value: 3.1E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..50
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..62

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G03640.1	Clc11G03640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031145	anaphase-promoting complex-dependent catabolic process
biological_process	GO:0030071	regulation of mitotic metaphase/anaphase transition
cellular_component	GO:0005680	anaphase-promoting complex