Clc11G02250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc11G02250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Phosphotransferase
Location	ClcChr11: 2172203 .. 2174276 (+)
RNA-Seq Expression	Clc11G02250
Synteny	Clc11G02250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCTGCTTCAGAACTTCCTCCTCTTACGTATTGAATTTGCGCAAAGAAATGTTCATTAGCACTATGACTAATAGGTTATTAAAATTTAAAAAGTGTCTAAACTCAATTTTTAATATTGTATTCTTGAATATTCAATTTTTTGTATAATAATATATAGGTTGTTGTCCTACTCAATTTTTTTTCGAATATAATGAAGAAATAATCAAATGCTTAATGTCTTATTGGTTTTATGTCTAGTAAAGTCGTTAATTTTATGAAAGGTTAAACGTATTACAGACCTATTAGACATATAATTGAAAGTTCAATTACCTATTTGGCATATTTTTTGTTTAAGATTATGTTAGATACAAAAATGAAACTTTATGCACATTCTAGAAACGTTTTAAATTTTAGAGACCTATTACGTATATTGGGCTTGTTTGCTGGGCCTTTGACCATTAGTGGGCTTGGTGGGCCTCTTTTCCCTTCATTGAGCAGCCATTGAGCGGCTATGGAGAACCAACTACTGGGCTTTCCTTCCTTTTATCGGGCTTCAGTTCGGCAATTCCCCATTACTAATGGGTTCGAGAAATGGGCCTGGCTCAAACTAATCTTCTTATATTTGTTCGTTAAACTTCGGCGCAGCCCGGATCCATTGGGCTTCTTTGGAAACGGAACAGAGTTTCGAAGCCGCCGAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGAAAAATCGATCATACGCCGTTCCGCCGGTAAATCTTGCATCTCCTTCACGGCCACCGCCGTTGTGTAAATGGATAATCTCTTCGTTGTTCGCTTAAATTTATTTTTCCTTGCCGTGAGTTTTTAATGATGAAGCACCAAGGATATAAGGGTTTTACAATTTTGAAAGTTGAGATTACGACGTAGATGTTAGTTACTGCTGATGGTTTTGTTGACTACTGCGGAGCCTGAATTGAACTTTTAGAATTTTCACTTCTTGAGGTTTCTTAGTTTTATTGCTGTTAGTTTGAGAATTGAATGAAATTATCGATTGAGAGAATTAAATAGTGTGAAATTTTGATATATTCCTTTTGGATAATTATCTCAACTTCTGGATTGGATTGCACTTTCGTAATTGATCTTGACAATGAAATAAAAGATTAAAAGAACAGCGGAATTTTGTATTAGCTGCTTTAATAATTCTGAGTTGAGTTCATTCGTAAAACCTCTCTATTGCAGAACTTTATCTTCAGCTGCTGTAGAGAGACAAGGAGTTTCAGCATCAACTAAAGGCTCGATTGTGAGATTTTTTATTTCTTAGGTTTTGCTTTCATAGTAAATTGCCATGGTTATTATTATCAAGCATTAAATTTGCTTATGATTACTTTGAATTTGCACAGTTTCCTGTTGCTAGTGGAAGTGAACTTCGGATCCTACAGGATAAAAGTTCTGCTGTGGCAGAGGCCAAACAAGACGGTTGCACTGGTAATTTTAAGATCCTTGATTCCCCATTTGGAAATTTTCTTTTACCTGTTATTCCTTCTCCCGCACAATTCGTTGAATAGTAGTTTCGAATCTGATACTGATTCTACCAGATTTTTATATCTGATATGCTTTTGTGTGTTGGAACTTTTTTGAATGATTGAGATACGATTACAGTAGGAAATTTGAGATAATAAACGGATTATGGACTAAATCTGTTCATAAACTCCAAATGACTAAGAACTCTATTGTAATTTAATGAATAAGTCTCCACTTTGCTAAAAGCTGAGAGTTTAAAAAGTGTTTTTCAACCTTCAAATTTCTATGCAATTGTCCACTTAGAACTCTTGGGTATAAATGTCAAATCATATCATTCTGATCACTATGATTAGGCATATTCGTCCTACCCATCTCCTTCTCCATGTGTTCGGTTCTTGTGAGTACCAATCTAGTATTGACAGGAAAAAGGAGAGAACGAACTATTATGCTTTTTTGGCATCTGAGAACCATTCGAGATGGAAAAAGATTAGAGGGTTCGATGCCACAGGCAGAGAAACGTGGCCATGTCTTACTTAACAATCTGTTAGTCGAAAAAGGAAAACTACTGTTCTGA

mRNA sequence

ATGTCCTGCTTCAGAACTTCCTCCTCTTACGTATTGAATTTGCGCAAAGAAATGTTCATTAGCACTATGACTAATAGAGTTTCGAAGCCGCCGAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGAAAAATCGATCATACGCCGTTCCGCCGAACTTTATCTTCAGCTGCTGTAGAGAGACAAGGAGTTTCAGCATCAACTAAAGGCTCGATTTTTCCTGTTGCTAGTGGAAGTGAACTTCGGATCCTACAGGATAAAAGTTCTGCTGTGGCAGAGGCCAAACAAGACGGTTGCACTGGCATATTCGTCCTACCCATCTCCTTCTCCATGTGTTCGGTTCTTGTGAGTACCAATCTAGTATTGACAGGAAAAAGGAGAGAACGAACTATTATGCTTTTTTGGCATCTGAGAACCATTCGAGATGGAAAAAGATTAGAGGGTTCGATGCCACAGGCAGAGAAACGTGGCCATGTCTTACTTAACAATCTGTTAGTCGAAAAAGGAAAACTACTGTTCTGA

Coding sequence (CDS)

ATGTCCTGCTTCAGAACTTCCTCCTCTTACGTATTGAATTTGCGCAAAGAAATGTTCATTAGCACTATGACTAATAGAGTTTCGAAGCCGCCGAACGACCGGGAAATTATGGCGCCTTCGTCTCAGATCAAGCGGCGAAAAATCGATCATACGCCGTTCCGCCGAACTTTATCTTCAGCTGCTGTAGAGAGACAAGGAGTTTCAGCATCAACTAAAGGCTCGATTTTTCCTGTTGCTAGTGGAAGTGAACTTCGGATCCTACAGGATAAAAGTTCTGCTGTGGCAGAGGCCAAACAAGACGGTTGCACTGGCATATTCGTCCTACCCATCTCCTTCTCCATGTGTTCGGTTCTTGTGAGTACCAATCTAGTATTGACAGGAAAAAGGAGAGAACGAACTATTATGCTTTTTTGGCATCTGAGAACCATTCGAGATGGAAAAAGATTAGAGGGTTCGATGCCACAGGCAGAGAAACGTGGCCATGTCTTACTTAACAATCTGTTAGTCGAAAAAGGAAAACTACTGTTCTGA

Protein sequence

MSCFRTSSSYVLNLRKEMFISTMTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGSELRILQDKSSAVAEAKQDGCTGIFVLPISFSMCSVLVSTNLVLTGKRRERTIMLFWHLRTIRDGKRLEGSMPQAEKRGHVLLNNLLVEKGKLLF

Homology

[Close]

BLAST of Clc11G02250 vs. NCBI nr
Match: XP_022946033.1 (hexokinase-1-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 134.4 bits (337), Expect = 9.4e-28
Identity = 77/105 (73.33%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  RVSKP NDREIMAPSSQIKRRKIDHTP RR LSS  VERQG+S STKGSI PVASGS
Sbjct: 1   MERRVSKPRNDREIMAPSSQIKRRKIDHTPSRRILSSVGVERQGISVSTKGSICPVASGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIFVLPISFSMCSVLVSTNLVLTG 128
           E RILQDKSSAVAEAKQD CTG      +F M  V V T  V  G
Sbjct: 61  EFRILQDKSSAVAEAKQDCCTG------NFKMGKVAVGTAAVCAG 99

[Close]

BLAST of Clc11G02250 vs. NCBI nr
Match: TYK10748.1 (hexokinase-1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 134.0 bits (336), Expect = 1.2e-27
Identity = 70/84 (83.33%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  +VS P NDREIMAPSSQIKRRKIDH P RR+LSSAA+ER GVSASTKGS FPVASGS
Sbjct: 1   MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHGVSASTKGSTFPVASGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIF 107
           E RILQDKSSA+AEAKQDGCTG F
Sbjct: 61  EFRILQDKSSAIAEAKQDGCTGNF 84

[Close]

BLAST of Clc11G02250 vs. NCBI nr
Match: XP_023545871.1 (hexokinase-1-like isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 132.5 bits (332), Expect = 3.6e-27
Identity = 76/105 (72.38%), Postives = 78/105 (74.29%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  RVSKP NDREIMAPSSQIKRRKIDHTP RR LSS  VERQG+S STKGS  PVASGS
Sbjct: 3   MERRVSKPRNDREIMAPSSQIKRRKIDHTPARRILSSVGVERQGISVSTKGSTCPVASGS 62

Query: 83  ELRILQDKSSAVAEAKQDGCTGIFVLPISFSMCSVLVSTNLVLTG 128
           E RILQDKSSAVAEAKQD CTG      +F M  V V T  V  G
Sbjct: 63  EFRILQDKSSAVAEAKQDCCTG------NFKMGKVAVGTAAVCAG 101

[Close]

BLAST of Clc11G02250 vs. NCBI nr
Match: KAG7030460.1 (hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-27
Identity = 70/84 (83.33%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  RVSKP NDREIMAPSSQIKRRKIDHTP RR LSS  VERQG+S STKGSI PV+SGS
Sbjct: 1   MERRVSKPRNDREIMAPSSQIKRRKIDHTPSRRILSSVGVERQGISVSTKGSICPVSSGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIF 107
           E RILQDKSSAVAEAKQD CTG F
Sbjct: 61  EFRILQDKSSAVAEAKQDCCTGNF 84

[Close]

BLAST of Clc11G02250 vs. NCBI nr
Match: KAG6599484.1 (hypothetical protein SDJN03_09262, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 131.3 bits (329), Expect = 7.9e-27
Identity = 70/84 (83.33%), Postives = 72/84 (85.71%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  RVSKP NDREIMAPSSQIKRRKIDHTP RR LSS  VERQG+S STKGSI PV+SGS
Sbjct: 3   MERRVSKPRNDREIMAPSSQIKRRKIDHTPSRRILSSVGVERQGISVSTKGSICPVSSGS 62

Query: 83  ELRILQDKSSAVAEAKQDGCTGIF 107
           E RILQDKSSAVAEAKQD CTG F
Sbjct: 63  EFRILQDKSSAVAEAKQDCCTGNF 86

[Close]

BLAST of Clc11G02250 vs. ExPASy TrEMBL
Match: A0A6J1G2N7 (Phosphotransferase OS=Cucurbita moschata OX=3662 GN=LOC111450243 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 4.5e-28
Identity = 77/105 (73.33%), Postives = 79/105 (75.24%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  RVSKP NDREIMAPSSQIKRRKIDHTP RR LSS  VERQG+S STKGSI PVASGS
Sbjct: 1   MERRVSKPRNDREIMAPSSQIKRRKIDHTPSRRILSSVGVERQGISVSTKGSICPVASGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIFVLPISFSMCSVLVSTNLVLTG 128
           E RILQDKSSAVAEAKQD CTG      +F M  V V T  V  G
Sbjct: 61  EFRILQDKSSAVAEAKQDCCTG------NFKMGKVAVGTAAVCAG 99

[Close]

BLAST of Clc11G02250 vs. ExPASy TrEMBL
Match: A0A5D3CHN8 (Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G00610 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 5.9e-28
Identity = 70/84 (83.33%), Postives = 74/84 (88.10%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  +VS P NDREIMAPSSQIKRRKIDH P RR+LSSAA+ER GVSASTKGS FPVASGS
Sbjct: 1   MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHGVSASTKGSTFPVASGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIF 107
           E RILQDKSSA+AEAKQDGCTG F
Sbjct: 61  EFRILQDKSSAIAEAKQDGCTGNF 84

[Close]

BLAST of Clc11G02250 vs. ExPASy TrEMBL
Match: A0A5A7V2P5 (Phosphotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00850 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 69/84 (82.14%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  +VS P NDREIMAPSSQIKRRKIDH P RR+LSSAA+ER  VSASTKGS FPVASGS
Sbjct: 1   MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHRVSASTKGSTFPVASGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIF 107
           E RILQDKSSA+AEAKQDGCTG F
Sbjct: 61  EFRILQDKSSAIAEAKQDGCTGNF 84

[Close]

BLAST of Clc11G02250 vs. ExPASy TrEMBL
Match: A0A1S3C8X8 (Phosphotransferase OS=Cucumis melo OX=3656 GN=LOC103498127 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 5.0e-27
Identity = 69/84 (82.14%), Postives = 73/84 (86.90%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M  +VS P NDREIMAPSSQIKRRKIDH P RR+LSSAA+ER  VSASTKGS FPVASGS
Sbjct: 1   MERKVSMPRNDREIMAPSSQIKRRKIDHHPSRRSLSSAAIERHRVSASTKGSTFPVASGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIF 107
           E RILQDKSSA+AEAKQDGCTG F
Sbjct: 61  EFRILQDKSSAIAEAKQDGCTGNF 84

[Close]

BLAST of Clc11G02250 vs. ExPASy TrEMBL
Match: A0A6J1KHE9 (Phosphotransferase OS=Cucurbita maxima OX=3661 GN=LOC111493878 PE=3 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 3.6e-25
Identity = 72/105 (68.57%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 23  MTNRVSKPPNDREIMAPSSQIKRRKIDHTPFRRTLSSAAVERQGVSASTKGSIFPVASGS 82
           M   VSKP NDREI APSSQIKRRKIDHTP RR LSS  V+RQG+S STKGS  PVASGS
Sbjct: 1   MERSVSKPRNDREIRAPSSQIKRRKIDHTPSRRILSSVGVQRQGISVSTKGSTCPVASGS 60

Query: 83  ELRILQDKSSAVAEAKQDGCTGIFVLPISFSMCSVLVSTNLVLTG 128
           E RILQDKSSAVAEAKQD CTG      +F M  V V    V  G
Sbjct: 61  EFRILQDKSSAVAEAKQDCCTG------NFKMGKVAVGAAAVCAG 99

The following BLAST results are available for this feature:

BLAST of Clc11G02250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946033.1	9.4e-28	73.33	hexokinase-1-like isoform X2 [Cucurbita moschata]	[more]
TYK10748.1	1.2e-27	83.33	hexokinase-1 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_023545871.1	3.6e-27	72.38	hexokinase-1-like isoform X2 [Cucurbita pepo subsp. pepo]	[more]
KAG7030460.1	7.9e-27	83.33	hypothetical protein SDJN02_08807, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6599484.1	7.9e-27	83.33	hypothetical protein SDJN03_09262, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of Clc11G02250 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc11G02250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1G2N7	4.5e-28	73.33	Phosphotransferase OS=Cucurbita moschata OX=3662 GN=LOC111450243 PE=3 SV=1	[more]
A0A5D3CHN8	5.9e-28	83.33	Hexokinase-1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7V2P5	5.0e-27	82.14	Phosphotransferase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00...	[more]
A0A1S3C8X8	5.0e-27	82.14	Phosphotransferase OS=Cucumis melo OX=3656 GN=LOC103498127 PE=3 SV=1	[more]
A0A6J1KHE9	3.6e-25	68.57	Phosphotransferase OS=Cucurbita maxima OX=3661 GN=LOC111493878 PE=3 SV=1	[more]

BLAST of Clc11G02250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc11G02250.1	Clc11G02250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0046835	carbohydrate phosphorylation
biological_process	GO:0001678	cellular glucose homeostasis
biological_process	GO:0051156	glucose 6-phosphate metabolic process
biological_process	GO:0006096	glycolytic process
biological_process	GO:0019318	hexose metabolic process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004340	glucokinase activity
molecular_function	GO:0005536	glucose binding