Clc10G21370 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.CCGATCTCTCTTTCTTACTTTAAGCTCAAATGTCCCTACAAATTCCAAATCCACCAACCATAATTCAACACCCTTCACTCTCTCTTTTCATTATGTGCCTTGTTCTTGTCCCATAGATCTCGATCCCACCGGCAATACCAATCACTGTTATTCCTCTTCTCTGCCACCAATCTCGATCCCACCGGCAAGAATCTTCAAATTTCCAGAATTCTCTTGTTTAATTTCTTTCTGGGGAAACCCGTATTCTTATTGATAAGGTTCAATCAAGTTCTTTGGTTAATTATGGAATTTGACTCTGTTCTTCCTCTGTTTCTATTCTTGCGATCTATGAAGTTTTGGATATAATTTGTGTTGAGTTCTTCAAATTCATTGCATTTTCTCAACTGGGTTTTTTTGGGTTTTTCAATTTATTCATTTGCTATGTGCTTGATTTTTGAGTTGTTCTAAAATTGGACTGATGAAACGAGGAATTGGGATTCTGTCTCCGGCCACTTACCTGCGAAATTCCGGCTGTTCCAAGTGGACGCCGGAGGAGAACAAACGGTTCGAAAATGCTTTGGCTTTGTTCGACAGAGATACGCCGGACCGGTGGCTGAAAGTCGCCGCGATGATTCCCGGAAAAACCGTCGGCGATGTAGTGAAACAGTACACAGAGTTGGTGGAGGACGTGAGTGATATTGAAGCAGGGCTTATTCCGATTCCGGGGTATCCCGTCGGCAACTCTTTTGTGTTGGAGTGGTCGAATGACGGCGGCGGGTTTTCGCCGATGTACCTCGGCGCCGGGAAGAGAGGCGGCTCTGGTCGGCCTCCCGATCAGGAAAGGAAGAAGGGAGTGCCTTGGACTGAAGAAGAGCACAGGTTTGAAATAAACTGATTTATTTGGTTGCTTAATTTGTGAGAAAATTTGCTCTAAATTTAGGCAAACGAAATTCAAATGTGGAAATTATTTCAACTTTTTTTTTTTTCACTCCTAATTTTACTTTTTAGATTTCAAATTATAATATTCCTTTCATTTTATTGTATTGAATTATAATCAGATTAATTTTGAATTTCCTTTAAATTCTGAAAATTATGAAACAAGATTATCGTAGTTAGATTCTTTCAATTGTAATTAATTAAAACAAACATAACAAGGTAATGAGAGATAAAATGAGATTAAAGAACTCTCTAAAAAAGATTAAGAAGAAGATAAGAAAGGAGCTATATTAGGAACAAATTTATTCTCCACTCTAAAAATTTTAGAAAAATTAAAATGCAAAAAAAAAAAAAAAAAGTTTGATTAAAATCTATTAATGTTGATAAGATATGAATCATGACAAGAAAAGTGCTAAATGAAAATTGTGGAGAGGAGAAGATTAATGCTAGCCCTATATCTAAAGAAGTACTTTTTTAAGGCAACTTTTGGCTTATTCTGTGGAAAAAGATTAGTTGAATACCAATAAACAAGAGTTTTATGTGATGCCTTTTTAACTAATCAAGTTGTATATATGTATATTTTTTATGTTTACTTAGTCTAGCTACCTTTATAATTACATTAAAAATATTAGTTTGGTTAAAATTTTTTAAACTCAAATTCTAGCTATTGAAACTCCTTCTTACCAGGGTTAGTTAAGGCTTAATATAAAATAGAAAGTAATTGTCCTGGATGGTTGACTTGCATTGAATGTCTATAATATGAAAATAGAATACTGATTTTCTATTAGTATAAATTTACTTAAAATTTTATGTAAACTATGCGTGATATGTGAATATCATTCTATGTTTAATGTGTATATGTGAATATAAGTTGGGAAGTGTGAGTTCTAGAATGCCAAATATATAAAATTAACGAATGCATGGTTATAGTTACAAATCATTATAAAAGTCAAACTCGAGAATAGATTTTAAACGTTTTGTAGTATATATAGTTTTAGTTTTTTTTTGTTAGTTTTGGTTGGTCTTGAAGTTAAGTATATTGTTGAAAGGACAGACAATTCTTGATGGGTTTGAAGAAGTACGGTAAAGGAGATTGGCGAAACATCTCTCGTAACTTCGTCACAACAAGAACTCCAACACAAGTGGCTAGTCACGCCCAAAAGTACTTCATCAGACAACTCACTGGAGGGAAAGACAAGAGAAGATCAAGCATTCACGATATTACAACTACCCATCTTTTTGATAGCCCAATTCAACCCAACCTGGACAAAACCTCCTCATCTTCTTATGTCGAAGTTACGATGGCTCCGCTTTGTGGGATCTCTTCACTTGGACCCAAATTATTACAAGACCAAATCTTTCTTAGAGGAAATTTCCATGGCTGCCAAAATATTGGTCCTTACAGCCCCACTGTTTTTCAAGTGCAAAGGGAGGAGCAATACCAGTGAGGTTTACTATATTGTTAGAATTTGGCTGTTGGATTAGTTTAATTTGCATCCTTGCAAGTATTAAGTTTGTATATTAATTTTTACAAGATATTAGTGAGAGTTTGGTAAATAAAATGAGGGTGAAGTTGGAATGTCAATGTTCATGAATTAATGC CCGATCTCTCTTTCTTACTTTAAGCTCAAATGTCCCTACAAATTCCAAATCCACCAACCATAATTCAACACCCTTCACTCTCTCTTTTCATTATGTGCCTTGTTCTTGTCCCATAGATCTCGATCCCACCGGCAATACCAATCACTGTTATTCCTCTTCTCTGCCACCAATCTCGATCCCACCGGCAAGAATCTTCAAATTTCCAGAATTCTCTTGTTTAATTTCTTTCTGGGGAAACCCGTATTCTTATTGATAAGGTTCAATCAAGTTCTTTGGTTAATTATGGAATTTGACTCTGTTCTTCCTCTGTTTCTATTCTTGCGATCTATGAAGTTTTGGATATAATTTGTGTTGAGTTCTTCAAATTCATTGCATTTTCTCAACTGGGTTTTTTTGGGTTTTTCAATTTATTCATTTGCTATGTGCTTGATTTTTGAGTTGTTCTAAAATTGGACTGATGAAACGAGGAATTGGGATTCTGTCTCCGGCCACTTACCTGCGAAATTCCGGCTGTTCCAAGTGGACGCCGGAGGAGAACAAACGGTTCGAAAATGCTTTGGCTTTGTTCGACAGAGATACGCCGGACCGGTGGCTGAAAGTCGCCGCGATGATTCCCGGAAAAACCGTCGGCGATGTAGTGAAACAGTACACAGAGTTGGTGGAGGACGTGAGTGATATTGAAGCAGGGCTTATTCCGATTCCGGGGTATCCCGTCGGCAACTCTTTTGTGTTGGAGTGGTCGAATGACGGCGGCGGGTTTTCGCCGATGTACCTCGGCGCCGGGAAGAGAGGCGGCTCTGGTCGGCCTCCCGATCAGGAAAGGAAGAAGGGAGTGCCTTGGACTGAAGAAGAGCACAGACAATTCTTGATGGGTTTGAAGAAGTACGGTAAAGGAGATTGGCGAAACATCTCTCGTAACTTCGTCACAACAAGAACTCCAACACAAGTGGCTAGTCACGCCCAAAAGTACTTCATCAGACAACTCACTGGAGGGAAAGACAAGAGAAGATCAAGCATTCACGATATTACAACTACCCATCTTTTTGATAGCCCAATTCAACCCAACCTGGACAAAACCTCCTCATCTTCTTATGTCGAAGTTACGATGGCTCCGCTTTGTGGGATCTCTTCACTTGGACCCAAATTATTACAAGACCAAATCTTTCTTAGAGGAAATTTCCATGGCTGCCAAAATATTGGTCCTTACAGCCCCACTGTTTTTCAAGTGCAAAGGGAGGAGCAATACCAGTGAGGTTTACTATATTGTTAGAATTTGGCTGTTGGATTAGTTTAATTTGCATCCTTGCAAGTATTAAGTTTGTATATTAATTTTTACAAGATATTAGTGAGAGTTTGGTAAATAAAATGAGGGTGAAGTTGGAATGTCAATGTTCATGAATTAATGC ATGAAACGAGGAATTGGGATTCTGTCTCCGGCCACTTACCTGCGAAATTCCGGCTGTTCCAAGTGGACGCCGGAGGAGAACAAACGGTTCGAAAATGCTTTGGCTTTGTTCGACAGAGATACGCCGGACCGGTGGCTGAAAGTCGCCGCGATGATTCCCGGAAAAACCGTCGGCGATGTAGTGAAACAGTACACAGAGTTGGTGGAGGACGTGAGTGATATTGAAGCAGGGCTTATTCCGATTCCGGGGTATCCCGTCGGCAACTCTTTTGTGTTGGAGTGGTCGAATGACGGCGGCGGGTTTTCGCCGATGTACCTCGGCGCCGGGAAGAGAGGCGGCTCTGGTCGGCCTCCCGATCAGGAAAGGAAGAAGGGAGTGCCTTGGACTGAAGAAGAGCACAGACAATTCTTGATGGGTTTGAAGAAGTACGGTAAAGGAGATTGGCGAAACATCTCTCGTAACTTCGTCACAACAAGAACTCCAACACAAGTGGCTAGTCACGCCCAAAAGTACTTCATCAGACAACTCACTGGAGGGAAAGACAAGAGAAGATCAAGCATTCACGATATTACAACTACCCATCTTTTTGATAGCCCAATTCAACCCAACCTGGACAAAACCTCCTCATCTTCTTATGTCGAAGTTACGATGGCTCCGCTTTGTGGGATCTCTTCACTTGGACCCAAATTATTACAAGACCAAATCTTTCTTAGAGGAAATTTCCATGGCTGCCAAAATATTGGTCCTTACAGCCCCACTGTTTTTCAAGTGCAAAGGGAGGAGCAATACCAGTGA MKRGIGILSPATYLRNSGCSKWTPEENKRFENALALFDRDTPDRWLKVAAMIPGKTVGDVVKQYTELVEDVSDIEAGLIPIPGYPVGNSFVLEWSNDGGGFSPMYLGAGKRGGSGRPPDQERKKGVPWTEEEHRQFLMGLKKYGKGDWRNISRNFVTTRTPTQVASHAQKYFIRQLTGGKDKRRSSIHDITTTHLFDSPIQPNLDKTSSSSYVEVTMAPLCGISSLGPKLLQDQIFLRGNFHGCQNIGPYSPTVFQVQREEQYQ Homology
BLAST of Clc10G21370 vs. NCBI nr
Match: XP_008442463.1 (PREDICTED: transcription factor DIVARICATA-like [Cucumis melo] >KAA0044153.1 transcription factor DIVARICATA-like [Cucumis melo var. makuwa] >TYK24984.1 transcription factor DIVARICATA-like [Cucumis melo var. makuwa]) HSP 1 Score: 499.6 bits (1285), Expect = 1.7e-137 Identity = 239/265 (90.19%), Postives = 249/265 (93.96%), Query Frame = 0
BLAST of Clc10G21370 vs. NCBI nr
Match: XP_038906337.1 (transcription factor DIVARICATA-like [Benincasa hispida]) HSP 1 Score: 486.9 bits (1252), Expect = 1.1e-133 Identity = 237/264 (89.77%), Postives = 245/264 (92.80%), Query Frame = 0
BLAST of Clc10G21370 vs. NCBI nr
Match: XP_004137732.1 (transcription factor DIVARICATA [Cucumis sativus] >KGN58790.1 hypothetical protein Csa_002630 [Cucumis sativus]) HSP 1 Score: 477.2 bits (1227), Expect = 8.9e-131 Identity = 236/268 (88.06%), Postives = 247/268 (92.16%), Query Frame = 0
BLAST of Clc10G21370 vs. NCBI nr
Match: XP_023538833.1 (transcription factor DIVARICATA-like [Cucurbita pepo subsp. pepo] >XP_023538855.1 transcription factor DIVARICATA-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 431.8 bits (1109), Expect = 4.3e-117 Identity = 212/264 (80.30%), Postives = 225/264 (85.23%), Query Frame = 0
BLAST of Clc10G21370 vs. NCBI nr
Match: XP_022971415.1 (transcription factor DIVARICATA-like [Cucurbita maxima]) HSP 1 Score: 426.0 bits (1094), Expect = 2.3e-115 Identity = 210/264 (79.55%), Postives = 224/264 (84.85%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy Swiss-Prot
Match: Q8S9H7 (Transcription factor DIVARICATA OS=Antirrhinum majus OX=4151 GN=DIVARICATA PE=2 SV=1) HSP 1 Score: 272.3 bits (695), Expect = 5.7e-72 Identity = 135/222 (60.81%), Postives = 164/222 (73.87%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy Swiss-Prot
Match: Q9FNN6 (Transcription factor SRM1 OS=Arabidopsis thaliana OX=3702 GN=SRM1 PE=1 SV=1) HSP 1 Score: 176.8 bits (447), Expect = 3.2e-43 Identity = 94/179 (52.51%), Postives = 123/179 (68.72%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy Swiss-Prot
Match: B8A9B2 (Transcription factor MYBS1 OS=Oryza sativa subsp. indica OX=39946 GN=MYBS1 PE=3 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.4e-40 Identity = 96/196 (48.98%), Postives = 121/196 (61.73%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy Swiss-Prot
Match: Q8LH59 (Transcription factor MYBS1 OS=Oryza sativa subsp. japonica OX=39947 GN=MYBS1 PE=1 SV=1) HSP 1 Score: 166.8 bits (421), Expect = 3.4e-40 Identity = 96/196 (48.98%), Postives = 121/196 (61.73%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy Swiss-Prot
Match: Q9LVS0 (Transcription factor KUA1 OS=Arabidopsis thaliana OX=3702 GN=KUA1 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 1.6e-26 Identity = 57/87 (65.52%), Postives = 67/87 (77.01%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy TrEMBL
Match: A0A5A7TKX4 (Transcription factor DIVARICATA-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001010 PE=4 SV=1) HSP 1 Score: 499.6 bits (1285), Expect = 8.1e-138 Identity = 239/265 (90.19%), Postives = 249/265 (93.96%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy TrEMBL
Match: A0A1S3B587 (transcription factor DIVARICATA-like OS=Cucumis melo OX=3656 GN=LOC103486321 PE=4 SV=1) HSP 1 Score: 499.6 bits (1285), Expect = 8.1e-138 Identity = 239/265 (90.19%), Postives = 249/265 (93.96%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy TrEMBL
Match: A0A0A0L9Y9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G732480 PE=4 SV=1) HSP 1 Score: 477.2 bits (1227), Expect = 4.3e-131 Identity = 236/268 (88.06%), Postives = 247/268 (92.16%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy TrEMBL
Match: A0A6J1I5P4 (transcription factor DIVARICATA-like OS=Cucurbita maxima OX=3661 GN=LOC111470144 PE=4 SV=1) HSP 1 Score: 426.0 bits (1094), Expect = 1.1e-115 Identity = 210/264 (79.55%), Postives = 224/264 (84.85%), Query Frame = 0
BLAST of Clc10G21370 vs. ExPASy TrEMBL
Match: A0A6J1GFK7 (transcription factor DIVARICATA-like OS=Cucurbita moschata OX=3662 GN=LOC111453708 PE=4 SV=1) HSP 1 Score: 418.7 bits (1075), Expect = 1.8e-113 Identity = 206/264 (78.03%), Postives = 223/264 (84.47%), Query Frame = 0
BLAST of Clc10G21370 vs. TAIR 10
Match: AT2G38090.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 297.0 bits (759), Expect = 1.5e-80 Identity = 150/227 (66.08%), Postives = 173/227 (76.21%), Query Frame = 0
BLAST of Clc10G21370 vs. TAIR 10
Match: AT5G58900.1 (Homeodomain-like transcriptional regulator ) HSP 1 Score: 263.1 bits (671), Expect = 2.4e-70 Identity = 130/195 (66.67%), Postives = 151/195 (77.44%), Query Frame = 0
BLAST of Clc10G21370 vs. TAIR 10
Match: AT3G11280.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 236.9 bits (603), Expect = 1.9e-62 Identity = 128/243 (52.67%), Postives = 162/243 (66.67%), Query Frame = 0
BLAST of Clc10G21370 vs. TAIR 10
Match: AT3G11280.2 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 236.9 bits (603), Expect = 1.9e-62 Identity = 128/243 (52.67%), Postives = 162/243 (66.67%), Query Frame = 0
BLAST of Clc10G21370 vs. TAIR 10
Match: AT5G01200.1 (Duplicated homeodomain-like superfamily protein ) HSP 1 Score: 235.7 bits (600), Expect = 4.2e-62 Identity = 126/236 (53.39%), Postives = 160/236 (67.80%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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