Clc10G21285 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G21285
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 34534929 .. 34541295 (+)
RNA-Seq ExpressionClc10G21285
SyntenyClc10G21285
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTGTGTATTTGAACTTGATTCTCAATGGTAAAATTTTGCCCTTGGAGGCCTTTTGAGTATAAACAGTGTCATTTGAGAGTTTCCAGATCAATACTATTTGCAATAGTGACATTAGATAAGAGCATCATCATTGAAGCAGTTCTGAAAAATAATCAAAAGTATCCTATTGTTTGTCAATTCTGAGATTGCTTGTTGAATAAGATTTATGGGAAATTGTTGCAATCATTATTTTGACATTAAAAAATTTGGAAATACAATTGTATTTAGCATCATTCACATTCACAATGAAACAACTCGAGCATGTGATGGTAAGGAAGCATCACTTATAGCTGCTGCTGTTAAGGCTGCATATATAAATATATTATCAACTTGCCTGTAAACCCCCAATCACCCAAATGGGGAAGGAAAAAAAAAAAAAAAAAAAAAAAGAAAATCCAAAATTCGTAATATGCCGTTTCTAAATACATTTCTCTAGCAGGAATTAGAGAAAATGAAAACAAAGTTATATGAACAAAATACAATCATTTCTCTCAAGATTCTGTCACTGATGAGGTGCTAGCCATTAGCCAAAGTGGGTTGAATGAAACTTGAAAGAACGCAATAAACACATCCAAAATGAAATAAGAAGAAAGAGGAGGAGAAAGAGGAAGCCATGAACAAAAGAGATTGCTGATCAGCTGAGTTTTTCTTTCTCCAAAATCCATTGTTGGTATGTAAGAACTCGCTTCTCATCCAATTTCACATAAAACTGATGCAATTTTCTGTACATCAATAGGACATGTCTATCTACATAATCTTCATACTTCTCATACAATGCGGGGATCGTAAGCACGAGTAAAAGGCCTGTCATTGAGAGAAAAAATATCCATGAAATTGATCGGCCATCGTCCATTTTTTATCACCAAGGATTGAGATTACACAAAGAATTGTGGAAACTTAAGATTGAAACTTACTGGTGTAACCCAACGTGAGAAGATCAGTCAAGCCACTGATAACTGAGATCAGCCACAAGCAAGCAGCTACTTTGAAGAACAATCTGGGGTCTTTTCCCATGGCTATATCTTGTGAAACAGACAGCAAAGTATTCACACGGGAACGAATGAAAGATGCAGCTTCGTTTACCATATCTTCTGAGAGATGCAACTCAGGAAGAGGCGGTGCTGGTCTGTTCAGGAAGAAAGGTAGCAGATTCAGAAGTAACCTTAATCCAAGTACTTAGAAGTTAAGCTAGACTTGATTAGCCTGGAAATAAGGAAGCTAGGAAATACATAGAGAAATTTCAGAATGACAATTTTCACTTCCGTAATGCATCAATCCTTTGCCAGGAAGCTAGTTCATAAATCAGAAGACGGCAGTTGACCAAAAACTACATGCTACATTCTGCATTGATAAATTTTAGAATGCTTGAAAACTACCGAATCGTTTCATCTCTAGCTTATTTGTCAATATATAGTGTCTCACTCATGTCCATCATCTTTTCCAAATGCATTTACATATTTCATACATCTAAGACAACTAACACTACCAAGTGACTGGAACTCAAAAGCGCACATGGACATGAAATACTGATGGAACTCATGGAAGTAAAAATCCCAAGATGTTTATCAAAAATAAAAGAAAGCAAAGGCAAATTAACAGATCACGTGGTTGAAAAACTAAAGAATTTGAATCAGGACGTAACCATCATTCAAGACAATTGTCAAATTCAATAGGGAAATGCTCCCTTATGTATTAAAGATCATGCATTTTGGAACTTATATATCAGTTTACCATTCTTCAATGATATTCAAATTGAAGACACGTCTTATAACAGACAAGTCAAGAGGCAATCTCCGATTAGTTACCTATTGAGAATGGAAGCAGATTTGGCCCACAGAAAGATAATGGTAACAAGAAGAAGTAGAACACTAGAAATTAAAGACAAAAGGGTGTAACCACATCTCTCAAACACCAGCCAAGTCGCCAGCGTTATTAACAATATCCCCACAGTTAGATTCTTCCGCCTCCAAAGAATTACATCTGCAACTGAACAGATTAGAAACTAAGAGTTAAATCCAATCCTTAGTTACTTTATAGCAAGAGAATTCATGGATCCTAGAACTCTAACAGCTGCAGTGAAAAGCAGAATCCACATAGAACTTTCATCAATCCAAGAATACATTGCATTAGCGATGCAGAAAAGAAGAAAACAACCACTGGTTCGAAATTCAACAGAGAACCGAAACAGAGCAATCCAATAGAAATTTAAAGAGGATCGATCCATCAAGAGAAACAAAGAAAAAAAAGAACCCAGAAATCAAAAGATCTTGACATACCAATACCGCCGCCAACAATTTCGTGAAGAGTTCGCTGTCTACAAAATAAACGATCCGAGGAACCCATCAAAAGAAGTAAAAAGAGAGGATCTTGATTCCAGTTAAGCTTTCAAAATACCCTAAAGAAACAGAAACAAAGAGCTATGAAGCAAGCGGCCAGCAGAAAAGGAAAAACAGGAGTTTGTGTTTAGCTTTTTTGTTGTCCACTCTGTGTTGAGAGTCTTGAGGGCAGACTAGTTGGAATGGTAGGAAATAAAAATGGGGATTGGGCCAGCTGACAGGTCAAAAGCGTCATGCCCCTCGTGGCTTTTTATTCTTCTTCTCCTTCATTTCCCCATCGGAATTGGAATTGGTATTGACATTGATTTCCTTTTATTTTCTTTATTTTTTTTTTTAACTGGTTAGAAAGAGAGAGGCAGTGGATACTCTTTGTATTACCCTCTGATCAAAGGAATTATTGCACATGAACATTTAAAAGATTTAACATTTTTATATTAGTTGGGACCCCCATAAGATTTACCTTCATAAAACAGTTCCCAAGTAACAAATTATGTAATTAGGAATCCTTATATGTTGGATTCAGTTGAGTTGGCAGGCTTTTTTTTTTTTAATGCAACATAATGGTTTGAATTGTTAATTTATTGTATATGTTAGTTGAGTGATAGACTCAACCTAATCTAATAGAGAGAAAAAAAAAAACTATTATAATTGAGTTAGGTTGAAATTTATTTATATTCAACCCAACCAACTCGAATAGTTGGTGCTACTCATAACACAGTAATTTCAGATTAGATTTTATATAACATGTTTTGTTGTTAACGTGATAATGGGGATTACTTTGAGATGTATAAAATATTTTGGAAGACAAATACAACTGTGTAATCGAACATTTGTGACAATCCAGAGGCCAAGCCGACGGCTTATTTTTTAAAGGTTTATACAGTATCAAATCTGAAAATTGAAAAAGTGAAAATAGTTACACTGCACAGAACGACTATAAAGCATGAATTCGACTTCTACTAGCTAACCTCAAGCTCAACAAGGATCTGGGTTTCCATTCTCCTTAAAATGCTCTTATTCTTGTCTATGAGCCAATCCTGTTCTCATCCTTCTTGAACCAAAAATCGTACTCAAGGCAGAAAGCACTCTTCCTCACGCAGTTCCCTTGTTCGTACGACTAATTTTCTTTCGAGGGCTGGAAATGCCACATTCTGCATTATCTGCAGATCCACTTTCACAGAAGGCAGCATCCGCATTGCCTACAGATCCATTTCCAGACTCGTTTTGATGAACAGCAACTTCTGTGCAGACCATAGATTCATTATTGGGGTTGGCAGCTTTGGCGGTGGAAACAGCATGTAAATCTTGGGGGGTAGCAGCAGCATCGGGGGAAAGTGCACATACATCCTGGGAGGAGGAAGCTTCAGGGGAAACAAAAGGTACATTTTGAGGGGAGGCAGGTTTGTTGGAAACTACAGGTAAATCTTGGAGAGTGTCAGCTTTTGGAGAAACTGCAGGAACATCTTGGAGGGTGGAAGCTTTCCGGGAAACTACGGGTACATCTTCAGTCTTGGCAGTTTCAAGGGAAACAACAGGTATATTCTTGGGGGAGGCAGCTTGGGTGGAGGAAACTGCAGGTTCGTTTTGTGGGTTAGCAACTCCTGCTGCCATGACTGCTGAGGAATCCATAAGGCTAGCAGCTATTGCAGCCTTCAAGTCCTCATCCTCCATGTCTATTAGCATTTCTGTTTCTCCAGATGAAAGAAATGTATCTTGCTGCTCTGTCCAGTTTACTCTTTGAGGAGGAGGGGGGGCTTGGGTAGAGTTGCACGATTTGGTTATCCTCTCAGCATCCTCAGGGGAAAGCCACTGACCATAACCGTTGGATGCTTCAGAGGATGAGATGGGAAAATCCTTAGGGAAGTTACCCCTAACAATAAAAATGCTCCAACCGAAGCCCTTTAGAGAGTCCAAGTAAGCTGAAAGGTAAAATTTAGAAAGATGCTGTGGGGCTGCATATAGACTATCAAAATTGTACCACTCCCCATTCACTTTCCTAATACAAAACCAATGGTCTTGCAAGTGGCATATAAATGCATTCTCCAGTTCAGGATCAATCTGCGCAGGTTCAGCAACTGGTGAGTTGAGAGGAATGACTTGGAGATCCCATACCTCCAAAGCCTTTTGTAAGACCTGCAAGCAAATATATAATGGTTTAAACATATAAGAACATCCCAACAAGTTCTATGTATTGCTTGCTTTATAAGAGAAACTGGTCTATAAAAAATGAACTCCGATCCCTCTGAATATTACACTGTTTTACATCAAAACTTTACCCATGAAAAGAAAAGAAAAGAAAAGAAAAATGAGAAAGATAGAGAGAGATAGTGTGCTAAATTTGAGTACCAAAATAAGATACTGAGTTTCATTGGTCATCCACAAAATTCATAAGCAACGTGCCTTGTCTGGTGTAGTTGATGGGAACCAAGGCTTTTTAACATTAAGATAAAGAAAATATTACAAGATTTGGGAAGAAAGTCAAGAGCCCCGTCCTTACTTGCCCACTTTCAATCTTCTTTGAGTACTCATTAAATCTTGGTCTACTCCCACATTTCCCCCATTTCTTTATAACCCCTTGCTGATCGCAAATCTTTCTAGCGATCTCTAACAATCCCATATCTTATTCTAAGTTAAATTTAAGAATTAAGACCCCATTTGATATGGTTTCTGGTTCTGAGAACTAAGCTAACACCACTACCACCTATAGACTATTTTGCTTTGTTATCTACACTTTTTACAAATATTTCCTTGGGAAATATGAAAATAAAAAAACTATGAGAAAAAAAGTACAATTTTCAAAACCAAAAAACCAAATGGTTATTCAAATGAGACCTAAGAGATCAGAAGTATATCTGTTCTACAATAGGTATGCCAAGATCCCTCCCCTCAGACACTCCATGTGGTCAATTCTCTTTATTATTTATCTAAGAAACAAATTTCAACCATGTGGTCGATTCTCATTCACAGTTATAAGTTACATATAATCCTATTCTTTAGAATTTCACATTTGAAGCAGAGCATGCAGCAAGAAACGCAAATCACTTGAAGGAAACACAGCAAACTTGCACTATATTATCAAGTACGGCCGAACAGTATGCATTGCCACAAAGGTCATGCATTGCAATGTTATTCAAAATTTGCATCACCACACTACTCAACACTGCTACCTCCGGTAGATGACATTGGGACATAAGGGAGAATAGAAGCTATGGGTTTTGGCAAACAAACATTGTCTTGAGAAATTGTCATTATGGGTACTGTTATGAACGTGTGAATTCCCATGTCATTACAACAAGTCATAGTATCAGTTATTTTAAATTCAAAACAGTAATTACTATATCCATTACGGAAATGGGTCGTAATGACTGTCACTACTGCATATATAGTGGCTTACAACGGTTGGTCTATTTCTACTGTTAAAGAATACGTAACTAGGACATCAGGATCGCAATTCAATTGATATCCGTAAGAAATTGGATATATCCGTAAACCAATATTCCTGAATGCAATTGCAATATTCAATAGCAATTAGCACCTGGAATTCGAGTAGTCAACTCGCATGATAAATGGAATTCCAATCACATAAAGATTATCCAGGGAGGAAGAAGCGTAATTAGAGTAAAGCGATGATAGTTGTTGAGAGGGAAGCGTGAGGAGAAGATTGAAAGAAGTGGGTTGAGTAGAAGGAGAAGAAAGAAACCTGGATGCTAAAATCACCGTCCAGGGAGACATTGTGAGACTCCTCGGAGAGGAAATCACCGGTGGTGGAACCAGAAAGCATCATCTGGCGCTCTTTGCGGTCAAGATCGGAAGCGAGAGCAGCCAAATCGAATTCGGAGAAAAAGGGACCTTGCAAGACGGTGTTGACGCAATGCACAGCGCAGAGCTTGGATTCTTGAACCTCGTGATACAACATGCCTCCATTGCAGGCTCCGTCCATAATCAGAGGCTGTTGAGAGAAAAGGGAGAAACAAAAACCCTAAATTAG

mRNA sequence

ATGTCTGTATCAGTCAAGCCACTGATAACTGAGATCAGCCACAAGCAAGCAGCTACTTTGAAGAACAATCTGGGGTCTTTTCCCATGGCTATATCTTGTGAAACAGACAGCAAAGTATTCACACGGGAACGAATGAAAGATGCAGCTTCGTTTACCATATCTTCTGAGAGATGCAACTCAGGAAGAGGCGGTGCTGGTCTGTTCAGGAAGAAAGGTAGCAGATTCAGAAGTAACCTTAATCCAAACACGTCTTATAACAGACAAGTCAAGAGGCAATCTCCGATTAGTTACCTATTGAGAATGGAAGCAGATTTGGCCCACAGAAAGATAATGGTAACAAGAAGAACAAGAGAATTCATGGATCCTAGAACTCTAACAGCTGCAGTGAAAAGCAGAATCCACATAGAACTTTCATCAATCCAAGAATACATTGCATTAGCGATGCAGAAAAGAAGAAAACAACCACTGATCTTGACATACCAATACCGCCGCCAACAATTTCGTGAAGAGTTCGCTGTCTACAAAATAAACGATCCGAGGAACCCATCAAAAGAAACCATAGATTCATTATTGGGGTTGGCAGCTTTGGCGGTGGAAACAGCATGTAAATCTTGGGGGGTAGCAGCAGCATCGGGGGAAAGTGCACATACATCCTGGGAGGAGGAAGCTTCAGGGGAAACAAAAGGTAAATCTTGGAGAGTGTCAGCTTTTGGAGAAACTGCAGGAACATCTTGGAGGGTGGAAGCTTTCCGGGAAACTACGGGTACATCTTCAGTCTTGGCAGTTTCAAGGGAAACAACAGGTATATTCTTGGGGGAGGCAGCTTGGGTGGAGGAAACTGCAGGTTCGTTTTGTGGGTTAGCAACTCCTGCTGCCATGACTGCTGAGGAATCCATAAGGCTAGCAGCTATTGCAGCCTTCAAGTCCTCATCCTCCATGTCTATTAGCATTTCTGTTTCTCCAGATGAAAGAAATGATCAATCTGCGCAGGTTCAGCAACTGAATTTCACATTTGAAGCAGAGCATGCAGCAAGAAACGCAAATCACTTGAAGGAAACACAGCAAACTTGCACTATATTATCAAAAGGAGAAGAAAGAAACCTGGATGCTAAAATCACCGTCCAGGGAGACATTGTGAGACTCCTCGGAGAGGAAATCACCGGTGGTGGAACCAGAAAGCATCATCTGGCGCTCTTTGCGGTCAAGATCGGAAGCGAGAGCAGCCAAATCGAATTCGGAGAAAAAGGGACCTTGCAAGACGGTGTTGACGCAATGCACAGCGCAGAGCTTGGATTCTTGAACCTCGTGATACAACATGCCTCCATTGCAGGCTCCGTCCATAATCAGAGGCTGTTGAGAGAAAAGGGAGAAACAAAAACCCTAAATTAG

Coding sequence (CDS)

ATGTCTGTATCAGTCAAGCCACTGATAACTGAGATCAGCCACAAGCAAGCAGCTACTTTGAAGAACAATCTGGGGTCTTTTCCCATGGCTATATCTTGTGAAACAGACAGCAAAGTATTCACACGGGAACGAATGAAAGATGCAGCTTCGTTTACCATATCTTCTGAGAGATGCAACTCAGGAAGAGGCGGTGCTGGTCTGTTCAGGAAGAAAGGTAGCAGATTCAGAAGTAACCTTAATCCAAACACGTCTTATAACAGACAAGTCAAGAGGCAATCTCCGATTAGTTACCTATTGAGAATGGAAGCAGATTTGGCCCACAGAAAGATAATGGTAACAAGAAGAACAAGAGAATTCATGGATCCTAGAACTCTAACAGCTGCAGTGAAAAGCAGAATCCACATAGAACTTTCATCAATCCAAGAATACATTGCATTAGCGATGCAGAAAAGAAGAAAACAACCACTGATCTTGACATACCAATACCGCCGCCAACAATTTCGTGAAGAGTTCGCTGTCTACAAAATAAACGATCCGAGGAACCCATCAAAAGAAACCATAGATTCATTATTGGGGTTGGCAGCTTTGGCGGTGGAAACAGCATGTAAATCTTGGGGGGTAGCAGCAGCATCGGGGGAAAGTGCACATACATCCTGGGAGGAGGAAGCTTCAGGGGAAACAAAAGGTAAATCTTGGAGAGTGTCAGCTTTTGGAGAAACTGCAGGAACATCTTGGAGGGTGGAAGCTTTCCGGGAAACTACGGGTACATCTTCAGTCTTGGCAGTTTCAAGGGAAACAACAGGTATATTCTTGGGGGAGGCAGCTTGGGTGGAGGAAACTGCAGGTTCGTTTTGTGGGTTAGCAACTCCTGCTGCCATGACTGCTGAGGAATCCATAAGGCTAGCAGCTATTGCAGCCTTCAAGTCCTCATCCTCCATGTCTATTAGCATTTCTGTTTCTCCAGATGAAAGAAATGATCAATCTGCGCAGGTTCAGCAACTGAATTTCACATTTGAAGCAGAGCATGCAGCAAGAAACGCAAATCACTTGAAGGAAACACAGCAAACTTGCACTATATTATCAAAAGGAGAAGAAAGAAACCTGGATGCTAAAATCACCGTCCAGGGAGACATTGTGAGACTCCTCGGAGAGGAAATCACCGGTGGTGGAACCAGAAAGCATCATCTGGCGCTCTTTGCGGTCAAGATCGGAAGCGAGAGCAGCCAAATCGAATTCGGAGAAAAAGGGACCTTGCAAGACGGTGTTGACGCAATGCACAGCGCAGAGCTTGGATTCTTGAACCTCGTGATACAACATGCCTCCATTGCAGGCTCCGTCCATAATCAGAGGCTGTTGAGAGAAAAGGGAGAAACAAAAACCCTAAATTAG

Protein sequence

MSVSVKPLITEISHKQAATLKNNLGSFPMAISCETDSKVFTRERMKDAASFTISSERCNSGRGGAGLFRKKGSRFRSNLNPNTSYNRQVKRQSPISYLLRMEADLAHRKIMVTRRTREFMDPRTLTAAVKSRIHIELSSIQEYIALAMQKRRKQPLILTYQYRRQQFREEFAVYKINDPRNPSKETIDSLLGLAALAVETACKSWGVAAASGESAHTSWEEEASGETKGKSWRVSAFGETAGTSWRVEAFRETTGTSSVLAVSRETTGIFLGEAAWVEETAGSFCGLATPAAMTAEESIRLAAIAAFKSSSSMSISISVSPDERNDQSAQVQQLNFTFEAEHAARNANHLKETQQTCTILSKGEERNLDAKITVQGDIVRLLGEEITGGGTRKHHLALFAVKIGSESSQIEFGEKGTLQDGVDAMHSAELGFLNLVIQHASIAGSVHNQRLLREKGETKTLN
Homology
BLAST of Clc10G21285 vs. NCBI nr
Match: AFK47761.1 (unknown [Medicago truncatula])

HSP 1 Score: 75.1 bits (183), Expect = 1.8e-09
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 384 EEITGGG---TRKHHLALFAVKIGSESSQIEFGEKGTLQDGVDAMHSAELGFLNLVIQHA 443
           E+IT GG      HHL LFA++I S+SSQ++F EK TL++ VDAM+SA+L FL LVIQH+
Sbjct: 3   EQITSGGGVSRHHHHLPLFAIEIRSKSSQVKFREKRTLKNSVDAMNSAKLRFLYLVIQHS 62

Query: 444 SIAGSVHN 449
           SIA S H+
Sbjct: 63  SIACSFHH 70

BLAST of Clc10G21285 vs. ExPASy TrEMBL
Match: I3T5G9 (Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 8.6e-10
Identity = 40/68 (58.82%), Postives = 52/68 (76.47%), Query Frame = 0

Query: 384 EEITGGG---TRKHHLALFAVKIGSESSQIEFGEKGTLQDGVDAMHSAELGFLNLVIQHA 443
           E+IT GG      HHL LFA++I S+SSQ++F EK TL++ VDAM+SA+L FL LVIQH+
Sbjct: 3   EQITSGGGVSRHHHHLPLFAIEIRSKSSQVKFREKRTLKNSVDAMNSAKLRFLYLVIQHS 62

Query: 444 SIAGSVHN 449
           SIA S H+
Sbjct: 63  SIACSFHH 70

BLAST of Clc10G21285 vs. ExPASy TrEMBL
Match: A0A7N0VM80 (Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-05
Identity = 32/74 (43.24%), Postives = 49/74 (66.22%), Query Frame = 0

Query: 378 IVRLLGEEITGG---GTRKHHLALFAVKIGSESSQIEFGEKGTLQDGV-----DAMHSAE 437
           IVRL+   + GG   G R++ L L  ++IGS+S QI FG++G+L++GV     DA+  A+
Sbjct: 3   IVRLVRNIVVGGEGNGMRRYQLTLSGIEIGSKSDQIGFGKEGSLKEGVDDMRLDAIDGAK 62

Query: 438 LGFLNLVIQHASIA 444
           LG LNL++ H S +
Sbjct: 63  LGLLNLMVHHPSFS 76

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AFK47761.11.8e-0958.82unknown [Medicago truncatula][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
I3T5G98.6e-1058.82Uncharacterized protein OS=Medicago truncatula OX=3880 PE=2 SV=1[more]
A0A7N0VM804.9e-0543.24Uncharacterized protein OS=Kalanchoe fedtschenkoi OX=63787 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROSITEPS51257PROKAR_LIPOPROTEINcoord: 1..33
score: 5.0

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G21285.1Clc10G21285.1mRNA