Clc10G19260 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G19260
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Ribonuclease T(2)
Location	ClcChr10: 33014975 .. 33029227 (+)
RNA-Seq Expression	Clc10G19260
Synteny	Clc10G19260

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTCTCTGATGTGGTGATCCAGATTCTATTGAAGCTTCCTCCAGAGTCTCTACTTCGATTCAAGTCTGTTTGCAAATCATGGTATGCTCTAATCAACGATCCTAAATTTGTGACGAAACATCTCTCAAATTCTCTTCCATATAAACATGTTCTCCTTAAGCGTATTGTCGCAACCAACTCTGAAAAATATGAATATGCGTTGTCCATCCTCAAATTTTCTCTTGATCGATCTGTGTCTCTTCTCGACGTACATTTGCCACTGTATGAGGATCATCCAGCCTTGGCTATTTGTGGTCAATCTCACAGCTTAGTTTGTCTAAGTGATCTTTGCGATATTTTCCTTTGCAATCCGATGACTAGACAATTCCGTAAACTTCCACCCTCAATTCTTATAGTGAGAGGTCATGATCCCGATGATTATTATGCACATGGGATTGCTGTCGGATTCGGGTATGATGCAAAATCTAGGAATTTCAAAGTGGTTAGAGTTGTGAATCCTTGGGTAGGAGTGGTGTCTCATCCTTCTAGAGTGGAAATTTACGATTTGAGCAAAGATAGATGGAGAGAAATTGAAACCCCTGTTTATGGCAATATATCTATCACACCTTCGTTTGAGATGTATCATGAAGGAACATTTTACTGGTGGGAAAAAATTCAATCATTTACTCAAAATACTGAACATATATTAACATTCGACATGAGCGAAGAAGTTTTTGGCAAAATTTCAGTCCCAGAGAGTTTCGATAGGCAAGGGAATTTTAGAAGTTTAATGGTTTTCAATGGATCCATCGTTCTTTTTTCTTATCCATATGCTGGAGAAATTTTTGACATTTGGGAGATGGAGAAGGATGAATTTGCAGTTGTTTCGTGGTCAAAGCTATTGACCATTGGCCCTCTTTGTGGAATTGAATTTCCATTGTTGTTTGTAAACTCCGATGAACTTTTAATGGAGTCCAAAGAAGGACAAGTGGTTTTGTACAGTATTAAAGCTCAACAGGTCAAAGAGCTCCCAATAAAAGGGGAAAACCCGCATGGATGGAGAACCAATCGGTTTGAAGCTACTTTTTTCATTAAGAGTTTGCTACCCGTGGAAGGAAGAAATAATATCAGTTATGAGTTTTAGTATTTTTCAACTAGTTTAAGTAAAAGTTTAGATGTAACAAATGTCGCTTATGTTTTTTGGAGATGATTTTAACGTAATTTTCGTACTTTGTTCCTCCATCTCTATGGAAAGGGAAACGGTTATTTTCAATTTTTCCATTTAAGATAACTTCCCCATTAATTATGGCGATATTTGTTTCATGGAAATGAAATGATAGAATATTATATTGTTTGTGCAAACTAGGTAAGTGAATTTGAATTTGATTTTTTTTTTCTTTTCGTCATTTTGTAATCACATAAGGTTTAAACATATATATCTCCTTGTACCAATTTCACCATTTATTTCTATCATCTTATTCCTTCAATCCAAACAACCTTAAACCTTTAAATTGAATTTTGAAAATGGAAGAATTTGATGTGAAAAAATAAATTATATTTGTAATTATTTTCAACCGTTTTTCTATTTCTAAAAATATCACTAATTTTTATAATAATGTAAATGGATATAATATTAATGCTTACAAAAAAAAAAAAAAAAAACATATAAACATATAATATTAATGCATATATGGCACTTGTTGGGCTTAAACCCAAAACTTTTAGGCTACCCAAAAAGATGATATCCATAGTAGGAGTTAAATCATTGTTGCCAGAATTGGTGACCACTAATAATCATCCTAAAAAGATGATGTCTCTAGCAAGAGTCAGATCTCTATTGCAAATTATAGTTGATGATAAAGTCATAGCACAAGTTACTCGTAGTTCAACTCTAGAAAAAAAAATGGAAGCAAGTTATTAAAGAAAAAGTATGAAAAAAAAAGTGATGCAACAAAGAAGGAAATAAATAGGGAGAGAAATTCTTTATTAAAAAAAAAAAAAAGAAATTCTAAAAAATTGCCAAAAAAAAAAAAAGTTAAAGGATAAGAAGAAAATATAGCGAATTAAAATAAAATAAAATAAACTAATCTCAAGATCAAGTTTTGTTCTTGGGAGATTTTTTTATAAAAAAAAACAAGAAAGAAAAAATAGAAGAAAACAAAGTATGGAAAAAGAAGAAAGGTAAAAATGGAGGCAATTAAAGTTTTTAGAGAAGAAGGTACGAAAAACTTCTTAAATTATAATTCTTAAAAAAAGAAAAACTAAAATTGTAAAATAGAGAAAAAGAAAAAAAAGAAAAAAGAAAGTTGAAATTGTTATCGTGCTATTTTGGAAAAATAGATAAACAAAATATCAAAACTAAAGATTTTGCTATATATGCAAAATTTGAAATGTTGAAGACTTTCAAAATCATATTCTTAAATTGCTACCTATTGCAAATTCTTTAAAAAAAGACCCCGAGCACGACGTTGAGGCGAACGACACGGAAGCACGGGTGGGGACACGTGGCAACCATCGGAGGCACTGGATCAACGGTCAGATTTGAGGGTGAAATAAAAGGGGGAGAGAGAGAGGGAGACTTATTCCCATAACATGGCCTACTTTCCTATTAATTAGGGAAGTGGCCCAGTCATGGAGGGAGTGGCTGATTTTCAAAGAAGTTGGTCATTTGCTTACTCATCAAGGCCACTCCCATTTGCTAAATACAGCCTTCACGATCTCCTCTCCCCTCCTATATAAGGTGAACCTTGGGAGTTGTTCAAGGGCACCGAAAAGTAGCCAACTCATCTCACGTTGCCAAGGATTTGGAGTGAGATCTTCTCTTTGTGTAAAGTGTTTGGTTGTGTGTCTCTTGTCAAAACGAGCTTAAAGCTCCACCCTTAGTATTTAGTGGTTTTGACATAATGAAGAGTTACATTTCCACTTAAGCACTTGTGTGTCCTCCCTTACCCATCAACAAGAGTGTCTTAGACGAAAGCATCAGAGAGAGATCAGGGAAGGCGCTCTAGCCTCCCTCAAGAATAAAAAGGTCAAGTCATTAGGCTGGCCAAGGGAGTACCTTGGCGCCGCACGGGGCAAATCGTATCAGAGACAAGGTTTTACTATCAGTATTACCTTAATCTCGATTCGTTCGCATTTGAATCTCTTCGTTTCACCCTGAGGCGATGACCCATTTATTGCAATACGCTCTCGTGAGGAAATTGAGGGCCCGTATCAGCGCACTCGAGGAAAGGATGGACGTTCCCCGGGGGCTCTTTGCTGCTGAGTTGCTCGGGGATCACCCCCTCCCGCCGTACGCACAAATGAACATATTGGCAGGCGACCTTGATGCCCGACTCGCGAACATGGATGTGGCAATCCAAGGCTTGTGGGAGGGCGTCCGCGCACACCAAGATAAGGAAGGAGTGAGCTTGACAACCATTCAAGACACTATCCGGCAAGCTACCCAACTGGTACGAGAAGAGTTGGTCTCCCTTCGGGGAGAAGTAGGCCAGCTACGAGCAGCGATCGAAGAGCATTCCCTCGTGCTGATGAATCAGAATATGGAGCAGTCGATCTATGCTCTAGAGCAATTGGTAGGACCGAATGGCCAAGCACAAGGCTTGGGACAAGGGATCGAGGTGATCCAAGTCGACAGCGACAGTGACGGCGAAGACATGAGCGTGTGTTCCAACCAAGTCGACGCCGACGAACGCTCAATATCTAGCTCCGATCACCATCTACGAAATTGCCTCGACGCGACAATCTGGACGCAAATGGACGCGAAGGGTCCCCTTTTCTGACGGCATGGAGGCTGGGGGAGCTCGCAGCAACAAGCTCCCTAGAAAACGCATCCAAGGAGTGATGCATGTTGCGCCGACGAGTCACCAATAAGGAGCGCCAGACGCACCAGGTATTCTGATGTGTTTACTTTCTGTTCGAATAAAGCAAGAGGTGCTTACCCTCCAACAAGGACGTTGGAGCTCAGTTGGGGGAGGTTTTCCAGACCCCTGATGTTCGAAGGGAACACGATAGAGGTTCGAGCAGGGTTAAGGGTGCCCTGGGGGGGAGGACTGACAGTTGATCGCGGGAGAAGCTTGCGGACCCAGTCATCGGTGGAGATGTGCGATAGCAAAGCTCGGCAAGGGCTCGCTTGGATTGGCAGTAGGTTGGAAGTCGGGCGTGCCAACCCTTCGGCCAGAGGGTTTAAGCCGGACAGGGGGCGGGTCCCCCCAAAGGCTCTACCGGGTCATGTAGGCACATTGGTGGCACGACATGCTAGCATTCCCCGAGGAGGTGCGCAGTCGGACAGCCACAGCCGCAGGTAAGTTGGAGGCGCACGCGGGGCACTGAGGTGGGAATAACTCCAGATTTTGGACACATGAATGGAACAATCACGGGGCATGTACATACCTTCCTTTTACCATGTATCAATATTTCAATATTTCTTTGGAACTTCGAAAACATAAAGATTATGATTTATTGGCAATCTTAAACGCGGTTGGGCCCAGCCCCAAAATCTCCAAAAACCTTGCATCACAAGACATCATAAGCCCCAAAATCTCAGTAATGGATATAATATTAACGCTTACAGGAAAAAAAAAAAAAAAAAAACATACAAACATATGAATTAAAATAATAATCCAAGTGAAAATTAATAGGAAAGAAAGCATTAACATTCACTTCTAATATCATTTCAATATATATATAGACACACTCACTTCTTATATTATTATTATTTTATTGTTATCTCTCGCTTCACAGTTTTAGAACTTCTTTATTACAAAAGTATATTCACTTCCAAATTCTAATATCATTTAAAAAGAAAAAATATTCACTTGTAATATTATTTATTTCCTTCTACTTGTCTCTCTCTTTGTAGTTTTCGAACAGCTTTATTGTAAGTGTGAGGGCCCAATTTTAACACTTTTAGAAGTTTAAGGGTCCATTGTTACTATTAAAAGTTTAAAGGTACAATTGCAACTACCACCATACTTTATGAGTGATTTTTTTTCAATTTGCCAAAAAAGAAAAAAAAATTGATTTGGTCATAATTTTATAAAAATTGTATTATTTTTATTTTTGGCTTTCCATGTTCTGGCACGTGTCCACATTATTTTTGGCTTGATCACAAAGTCAGCAACATCCTCTGGCGGCTGTTCGTCGGAATCGACAGCCAGGGACGTGCTCTTGTGCTTCGACATGGCTGAACTTAAATTTTATGTGAACTTTCAACCAAATCAAAGAATAAAAATGACATTTCAAAATAACATCACTATATATGAAACTTCATTCAGTTACAACTTAAATATTTGCATTGGAATGAACTCAGATAAAAATAATATTAAATCTGTAAAACAAGTTCATCAAATAATTAAATTAGAAATCCAAAGCAAAAGAAAAGAAACCTGAAGTTTATGCCTGCACCACAAAATCAGAAGTTAATGATCAATCTCCTGTGTGCTTGAGGTCCATTCCTAGAGTTTTAGACTTGAAGAGGTTACAACACTAAGATTTCAACTTTTTAAAAAAGCATCTTAAATATTATCCAAAAAAAAGAAAAAAGGCACCCTAAATCAGTGATATATATTGTAAATGTTTGAGAACATGTAGAAGTTTGCAAAGCTTAAAAGGGATTATCTATTTAGAGTGGTTGGATGGGTTTTATGAAATATGATCCATTCAGAAAAAATCAAGCGATTTGAAGCAATCATATTCCCGTTCAGGGCATCCCCCATTGAAAACAGCTGTAAGAACACCCAAGAAATACTGTCAAATACTCAAAGTTATTGTTGAAAATAAAATTGTTGATCGACACTACTTGATTCTAATTACCAGTAAGAAGTCCAACTAACTGACTGAGTTTGGCCAAAAAGTTGATATGCGTATGGGTATGGTACCTCCTTAGGCTATGGGTACTCCAAAACAAGGTTGATCGAGGTATGGGTTGTGAATCTAAGTTTTTATTAGAGCTCTGATTTCGTGTATGATAGCTACTATTATATGTCAAAGCATGGGTGTTCTTGTACAACTGACAAAATCATGTGGCTTGTGGAACACGCCTTCGCGAAAAAAGAAGAAAAAACGCAGGAGCTGAAGCTACAAAGAGGGAGAGAAAGATTAAACAAAAAGGAATTAGGGCTTGGAGCTGATTCTATTTTCCTTTTTTATTTTTTCTTTTTTCTTTTATTTTCTTTTTTGGTTAATAGTTAGAGAATGAGGGAAGAGAAAATATGAGAGGGAAACGGAATGGGGAGGGAGGAAACAAAAAATTAGGGCTTGGAGTTTGATTTTTTTATTTTTTTTTTGTTAATACTTAAGGAATGAGGGAAAAGAAAATATGAGAGGGGAACAAAAATGGGGGAGGGAAGGAAACAAAAAGATGAATATCTTTTCCTTTCTATTTCATCCCATTCATTTCTTAAAATATTTTCTATAAGTGATGCAATAATATGTTGGTAACATAGACCTTTTTCTTGACGGAAAATGCCGACCATCAACGTATTGAAAAATTGAGGATTCGCTTTTTTATAGAAATTTACATATTTTTGTGTCAAAAAAGGTGATTCGTTCGACGTTTTTGCATGCCGACTTAAATATAAACAATTATTGATGTTTTATGACCATCAAGATATGTATTTTAGAATTAATAATTATTTTTAAGCTCTACATTAAGGCTTTATTGATGGTCGTAAGTCATGAACATCAAGAAAACAAAAAATTCATGAGTCAATAAAAGCTAAAATTGTAGTAGTGGTTGTTGATATATAGTTTATAATGATACACACATTTATTGCACTTGATCAATATATTGTTGATATACTTTACAATGTTACGCTCGTTTACACTTTTGATACCCTTGATTGACATACTACCGATATACTTTATAATGATATACATGTTTATACGGTTGATACAGTTGACTGATATATTTTATAACGACACACACATTGATTGATACTAAGTACTTGATTGCTATTTGATTTACTATCTACCTTGTGGGCACTTGTTGGGCTTAAACCCAAAACTTTTAGGCTGCCCAAAAAGATGATATCCATAGTAGGAGTCAAATCACTGTTGCTAGAATTGGTGATCGCTAATAACCATCCAAAAAAGATGATGTCTCTAGCAAGAGTCAGATCCCTATTGCAAATTATAGTTGATGATAAAGTCAGGGCACAAGTTACTCGTCGTTCAACTCTTGAAAAAAAATGGAAGCAAGTTATTAGAAAAAAAATAAAAATGATGCAACAAAGAAGGAAATAAATAGGGAGAGAGAAATTCTTTATTAAAAAAAAAAAAAGAAAAAAAGTTCTAAAAAATTGCCCAAAACAAAAAATTTAAAGGATAAGAAGAAAATACAGTGAATTAAAATAAAATAAACTAATCTCAAGTTCAAGTTTTGTTCTTGGGAGATTTTTCTTTTAATAAGAAAAACCAAAAAAAAAAAAAAAAAAAGAAAAAAAAAAAGAAAAACTAGAAGAAAAGAAAGTATGGAAAAAGAAGAAAGGTAAAAATGGAGGCAATTAAAGTTTTTAGAGAAGAAAGTACATAAAACTTCTTAAATTATAATTCTAAAAAAAAAAAAACTTAAATTATAAAATAGAGAAAAAAACAGGTTGAAATTGTTATAGTGCCATTTTGGAAAAATAAATAAACAAAATATCAAAACTAAAGATTTTCCATATATGCAAAATTTGAAATGTTGAAGACTTTCAAAATCATATTTTTAAATTGCTACCCATTGCAAATTCCTTTAAAAAAAAAATTCACAAATTTTCATTTTTTATTTATTATCCACAACACCAAAACAATTTTTTTTAAAAAAATAATTACCTTTCTTTTTACCTTACAAATTGAACTACTTTGGTGATGGGTGAACTTGCAAGCCCGAGTAGACAAATTTGGGTAATAGGCCAAGGTCTCTATATAAAAAGGGTTGTTTCTTTCTTCTCATTCTCCATTTTAGTTCATCTTCTTCCATCTCATTGTTCTATTTTCTCTTCTATCGATTCTCAATGGCCCAACCTATTTTCATTTTCTGTTTTTTAAGTTTGGTGTTGTTCGTGAATGGTGATCCATTTGATTTCTTCCAGCTAGTTCAACAATGGGGCCCAAGCACATGTAACAACACTCGTGGCACCCAGTGTTATGCTCAACCTCAACCCTTGTTCACTATACATGGCTTGTGGCCTAGTAACTATTCCAATGCCCGTCTTGCTTGTCGAAGTAACGAACAATTTTTAGAGTCCAAGGTTCCCATCTTCTTAAATATTTTTTATGTGTGTTTTCTCGCTGTCTTTAGCATTTTAACCATTGTTTCAACATGCTTTTATTTTAGGTGACTGCACTTTTATCAGACTTAAATACATATTGGCCAGATGTAATAGGTGGGGATAACTCCAGATTTTGGACATATGAATGGAATAAACATGGGGCGTGTGCAAAGCCTCCATTTACCGTATATCAATATTTCAATATTGCTTTGGAACTTCGAAAACATAAAGATTATGATTTATTGGCAATCTTAAACGCTGCTGGGCTCAGCCCCGAAATCTCCAAAAACCTTGTATCCCAAGACATCCTAAGCCCCATTGGGAAGAAAACGGGAAAGAAGCCCGGCATCCACTGCAACAACAATGGTAAAACTGGGAAGTTGCAATTGTTTGAAATTGTTCTGTGTTTTGACAAGAATGGGGCTAATCTCCTTGACTGCCCTCCGTTTGTTAGTAGCAGTTGCAAATCTAAATTTTTGTGGCTCCTCCCACAACAGAGTTCGGTTGGTGTTACAGATTATCCATGATTTCAAGTTTTTTTTTTTTTTTTTTCTGTCTTTATTAAATAAGTATGTGTGTTCACTGTCGTCCTTAAGTAGTGTTTAAATTAGTTTGTGTGTTCGTTGTTGAATGTTAAATCAGTTTGTGTGTTTTACTATTATATTGTTAAACCAGATTGTGTGTTCACTCTCGAAGGTATCCATATTTGTAATGTTAAATTTTAGTATCAAAATAAATCATATATCATGTTATATTGTAAGTATATATGAACTCTACTTTTAAAAAAATAAAGAAATAAATAAAAGAATACAGGTTGAACACAATGAGATAAAGAAAAATAAATGATAGAACGTAGTATAGACCAAAAAGATATAAATATATATATACTCCTTGTGGGCCATTTTGTTACTATACAATTCTTTCATTTAAAAAATCATATTATTCTCTTTTATGGCAATTACAAATATTTTTACTATTATTATAGGAATTATAATTTATTTTTTTAAATAAAATTCAACACGTCTGTTTTTACCATTTTTCTAAAATTTGTTTTCTTAAATTATTTATTTTCTTCTTATTGTTTGTGGCTTGGCAGATTTACAACCCCTTTATTAGTGAAAGTATACAAACATTAATAGGAAAGGAAGCATTAATAGTCACTTCCAAGTTCTAATATCATTTCAAAGAAAAAAAATATATAAAGTTGTAATATTATTTATTTTCTTTTGTTGTCTCTTTCTCTTGGCAGTTTTAGAACTCCTTTATTAGTAAAAGTGAGAGACTAGATGACTACAGATAGCTATTATATTATACCCCATTGGGTAGATTTATTAAAAAAAAGAAGAAATTGATCTGGTCATATTTTTATAAATATTTATTATATTTATTTTTGGCCTTCAATGTTATGAAAATTTGCATTTTCTTACTTGAACTTTGGATGGCCGATTTTTTATTTATTTATTTAAATTTAGCTTGTTTTCGAAAATATTAATACAAATAAGATAACAAATTAATTAAGAAATTTAGATGTGGAAGAAATCTCTATGGCCTTCCTTTTCAAAAGAAAAAAAACCAAAAAACAAATGGTTCTCAATGGGTCTTAGTCATTGTACTTTTAATTTTGTAATAATTTAATTAGGTGTATTTGGTTTACTTTTCAAGTGCTTAATTGTGAAAATAAGTCACTTTGGAAAGAAATTGGAGTGTTTGACAATCACTTAAAATAACTTTTAAAAAAATTGAAGAGTTTGACTACCACTCAAAATAGGAAAATTTGAAAATATATTGTTGTTTTATAAATTATTTAGAAAAATATTGTAGTTTTGAAAATATTTATGAAAATATGGTAGTTTTTATTGGGAAGTCCAACCCTCGACCATCTCTCTTTTTTTTTTCTTCTTTCCTTGGTCGAGGGTTCAACCCTCGACCTTCCTTTTTTTTTTTTTTTTATTTAAATTGTTTTTTCCCACTTCCACTTCCACTTCCACTTCCCACTTCGGAAAATTTTAAAAACCGTTATAATAACAAACATATATTTTATCACTAACCAACCAATATAAAATTAAAGTGTTAATATTAATACAACAATTTTTTTTCCACTAAAATTAGTAATAATAAAAAAATTCAATGTGTCCCACAAGGCGGACGTCGCCGATTTCGAGCTGGTAGGCGTCGTCGACTTTGCACTCTAGGTTGCTCCGGTGGATCTGGTTGCTCTGGTACCTCTGCAGGCACTTCATGGACGTCGTGTCCATGTGTATGCATGTATGAAGATGATGGTTCGGCCTCTGAATCATAATATTTTGAACCAAAGGCTCGTTGCATCATCATCGGACTGGCATAACCAGTCTGGCTCTGCGTTTGCGTCTGCATCATAGGAGGTAATTTTCCACATTATGGTCAACCGCATCAAACTCATCTTCTTCTGCTCGAGCACGTCCCCTATGCCTAGGAATTGGTGGAGGTGCAATAGGTATATCGTACATGTAGTGTAATTCTTCCATGTAACTTGCGTTATTATTGCATATAGTAAATGATCATTTGCAACATCATGAAGACTACTATTGCTTGATCTCTGTCAATTACAAAACAATTAGATAATATTTCAAATAAAATTTAAATAAAAAATAATTAGACAATATTTGATTATATACCAAATGACCCAAAGCCGCTCCCAGACGAGTAATGTAGCGTCTCGTAATATTATTATACCAAAGGATGTAATCTTGAGTTGCATCCCTATCGAATTGCCCAAGTGAAACGCCGACTGCAATAAACCTTCTACGATAGTGCCATTGCACTACCAAATGTGCAACTTTTTCAGACCAATCTGCAGTTCTCAGGTCAATGTCATGTAGTAGGGGCTCAGTAGTGCACTCTGATGGGACATCCTGTTTGAAACCAAACTGTCGGATTACCCTGTCAGGAAGATGTCACTCACCAATGTGAAAACATATGAGTGGGCTCATCGTCCGCCATATGTCTTGATTGCTCGTACAAAAATTGGGCAAAGTGTCCATAACAGCTTTGTAAGGCTCCCAAATAATCTAAAACATAACATATTACATTAAAAATATTAAATACAAGTATATAAAAAAATATGTATAAAAAGTTCATTTGGGTTTAGTATTTACATACCTGGTCAGGTTGAAGCAGATCAAGCATATATCTATATTGACTCACTACATGTGTAGTTGACCGAGTTACACAAAATTGGTCTCTCCACCTATATTATTAAATTAATATTTTAGGTTTAAAATTAACTATATTAGTCACAAAAAAATATTAGCTAAATTAAATTAAAATGACATACCGAGAACCGTAGGCTCGTTCTGCTAATTGATGATCGTTAACATGTCGGAGTTGTGGAGCCATTGTTGGAAATCGTTCCCAAGCCCATATTTGTTTTGATCGAGGGTTGAGGTCTCGACCTTTGCCTTGGTCGAAGGTTGAGGCCTCGACCTTTTCCTCTCTCCACTATCCAATCTTCTCTCTCCTCCAAACTACTATATTTTCCTAAATAGTTTCCAAACTACAATATTTTCCTAATTATTTTTACTAACCACAATATTTCAATAAAAGGTCCCTCAAAATAGCTCTTGAAATATTTTAAAATTTTATTTTAACTTGTAAGAGATCAAATAAAAATAACTTTTTTGATAAATGTTTTTTTAAAGTCAATTCAAACATTTTTTTTCTTTAGTCAATTCAAACATGTTGTTACTCTCCAAACTTTAATATACTAGTTTGTAACTAAGTGCATTGCACGTATTTTAAAAAGTTTAAAATGTAACTTTATTATAGAAGTTTCAAAGTATCATTTATGTATAAGAGACTCTCACCCTCGTTGCCAACCGTATAAGAGAGTTTAGATAAATTGATTGAAGAATAGTTTTGAATTAAATTTTAGTTTATATGTAATTAATTAATTAATTATCATTGTAAACAAACAATTAATAAATAAAATATATTATATTGTTAAAATAATATAAATAAAATATTGCAAAAAGGATAAACTAATCATATTGTTTAAAAAAAAAAAAAAAATTGATCCCTCATGTCACTTGTATATTGTTAAAGAAAAAAAAAAAAAAAAACTTCAAATTATCAATTTTTATTTTGATCACCTATTTAACTTTAAAATTTTATTTAATTTTATGTCATTACTTAATTGAAAACTTTTATGTAAATTATTTTCAATTTTTTTTTTTTTTTTTTCTAAATTTAATCAGATCTGGCACTTTTTTCCATCTCTCCACTTTCTTCAAAGAATTTGTGAAGACAGGTAAGTCAGCATCAAAGGACCATGAGCAAGGAATTATAAAATTCAAAATAATTTGTTAATTTGTTTTGTCCTTGTCATTCATTCAATGCCATGCCTATTTGTCTCTAGGAATTCCCATTATTCTTCTAAGCTTATACCCGACGATTGCTTTCCCTTTTCTCTGCTACCATTCTCTGTGTAGGTCGGTTACCTCACGCCACCCTATTAGCCACTAACTTGTTTTCATGGCAGACCATTCTCCACGGTAAAATTTTAAGCAATTCTTATTTCTTAGCCACAACCAATACTTTCCTTCTCTCTTATTTAACAACGAAGACATCATTTTAAATCCCCAGTTTAATCTTTTCTCTTCACTATCCATCATCATAAATAATGGTGGTCTCTGATGTGGTGATCCAGATTCTATTGAAGCTTCCTCCAGAGTCTCTACTTCGATTCAAGTCTGTTTGCAAATCATGGTATGCTCTAATCAACGATCCTAAATTTGTGACGAAACATCTCTCAAATTCTCTTCCATATAAACATGTTCTCCTTAAGCGTATTGTCGCAACCAACTCTGAAAAATATGAATATGCGTTGTCCATCCTCAAATTTTCTCTTGATCGATCTGTGTCTCTTCTCGACGTACATTTGCCACTGTATGAGGATCATCCAGCCTTGGCTATTTGTGGTCAATCTCACAGCTTAGTTTGTCTAAGTGATCTTTGCGATATTTTCCTTTGCAATCCGATGACTAGACAATTCCGTAAACTTCCACCCTCAATTCTTATAGTGAGAGGTCATGATCCCGATGATTATTATGCACATGGGATTGCTGTCGGATTCGGGTATGATGCAAAATCTAGGAATTTCAAAGTGGTTAGAGTTGTGAATCCTTGGGTAGGAGTGGTGTCTCATCCTTCTAGAGTGGAAATTTACGATTTGAGCAAAGATAGATGGAGAGAAATTGAAACCCCTGTTTATGGCAATATATCTATCACACCTTCGTTTGAGATGTATCATGAAGGAACATTTTACTGGTGGGAAAAAATTCAATCATTTACTCAAAATACTGAACATATATTAACATTCGACATGAGCGAAGAAGTTTTTGGCAAAATTTCAGTCCCAGAGAGTTTCGATAGGCAAGGGAATTTTAGAAGTTTAATGGTTTTCAATGGATCCATCGTTCTTTTTTCTTATCCATATGCTGGAGAAATTTTTGACATTTGGGAGATGGAGAAGGATGAATTTGCAGTTGTTTCGTGGTCAAAGCTATTGACCATTGGCCCTCTTTGTGGAATTGAATTTCCATTGTTGTTTGTAAACTCCGATGAACTTTTAATGGAGTCCAAAGAAGGACAAGTGGTTTTGTACAGTATTAAAGCTCAACAGGTCAAAGAGCTCCCAATAAAAGGGGAAAACCCGCATGGATGGAGAACCAATCGGTTTGAAGCTACTTTTTTCATTAAGAGTTTGCTACCCGTGGAAGGAAGAAATAATATCAGTTATGAGTTTTAGTATTTTTCAACTAGTTTAAGTAAAAGTTTAGATGTAACAAATGTCGCTTATGTTTTTTGGAGATGATTTTAACGTAATTTTCGTACTTTGTTCCTCCATCTCTATGGAAAGGGAAACGGTTATTTTCAATTTTTCCATTTAAGATAACTTCCCCATTAATTATGGCGATATTTGTTTCATGGAAATGAAATGATAGAATATTATATTGTTTGTGCAAACTAGGTAAGTG

mRNA sequence

ATGGTGAGTCTCTACTTCGATTCAAGTCTGTTTGCAAATCATGACGCTCTCGTGAGGAAATTGAGGGCCCGTATCAGCGCACTCGAGGAAAGGATGGACGTTCCCCGGGGGCTCTTTGCTGCTGAGTTGCTCGGGGATCACCCCCTCCCGCCGTACGCACAAATGAACATATTGGCAGGCGACCTTGATGCCCGACTCGCGAACATGGATGTGGCAATCCAAGGCTTGTGGGAGGGCGTCCGCGCACACCAAGATAAGGAAGGAGTGAGCTTGACAACCATTCAAGACACTATCCGGCAAGCTACCCAACTGGTACGAGAAGAGTTGGTCTCCCTTCGGGGAGAAGTAGGCCAGCTACGAGCAGCGATCGAAGAGCATTCCCTCCAACATCCTCTGGCGGCTGTTCGTCGGAATCGACAGCCAGGGACTTTGGTGTTGTTCGTGAATGGTGATCCATTTGATTTCTTCCAGCTAGTTCAACAATGGGGCCCAAGCACATGTAACAACACTCGTGGCACCCAGTGTTATGCTCAACCTCAACCCTTGTTCACTATACATGGCTTGTGGCCTAGTAACTATTCCAATGCCCGTCTTGCTTGTCGAAGTAACGAACAATTTTTAGAGTCCAAGGTGACTGCACTTTTATCAGACTTAAATACATATTGGCCAGATGTAATAGATTATGATTTATTGGCAATCTTAAACGCTGCTGGGCTCAGCCCCGAAATCTCCAAAAACCTTGTATCCCAAGACATCCTAAGCCCCATTGGGAAGAAAACGGGAAAGAAGCCCGGCATCCACTGCAACAACAATGGTAAAACTGGGAAGTTGCAATTGTTTGAAATTGTTCTGTGTTTTGACAAGAATGGGGCTAATCTCCTTGACTGCCCTCCGTTTAGTCTCTACTTCGATTCAAGTCTGTTTGCAAATCATGGAGAAATTTTTGACATTTGGGAGATGGAGAAGGATGAATTTGCAGTTGTTTCGTGGTCAAAGCTATTGACCATTGGCCCTCTTTGTGGAATTGAATTTCCATTGTTGTTTGTAAACTCCGATGAACTTTTAATGGAGTCCAAAGAAGGACAAGTGGTTTTGTACAGTATTAAAGCTCAACAGGTCAAAGAGCTCCCAATAAAAGGGGAAAACCCGCATGGATGGAGAACCAATCGGTTTGAAGCTACTTTTTTCATTAAGAGTTTGCTACCCGTGGAAGGAAGAAATAATATCAGTTATGAGTTTTAGTATTTTTCAACTAGTTTAAGTAAAAGTTTAGATGTAACAAATGTCGCTTATGTTTTTTGGAGATGATTTTAACGTAATTTTCGTACTTTGTTCCTCCATCTCTATGGAAAGGGAAACGGTTATTTTCAATTTTTCCATTTAAGATAACTTCCCCATTAATTATGGCGATATTTGTTTCATGGAAATGAAATGATAGAATATTATATTGTTTGTGCAAACTAGGTAAGTG

Coding sequence (CDS)

ATGGTGAGTCTCTACTTCGATTCAAGTCTGTTTGCAAATCATGACGCTCTCGTGAGGAAATTGAGGGCCCGTATCAGCGCACTCGAGGAAAGGATGGACGTTCCCCGGGGGCTCTTTGCTGCTGAGTTGCTCGGGGATCACCCCCTCCCGCCGTACGCACAAATGAACATATTGGCAGGCGACCTTGATGCCCGACTCGCGAACATGGATGTGGCAATCCAAGGCTTGTGGGAGGGCGTCCGCGCACACCAAGATAAGGAAGGAGTGAGCTTGACAACCATTCAAGACACTATCCGGCAAGCTACCCAACTGGTACGAGAAGAGTTGGTCTCCCTTCGGGGAGAAGTAGGCCAGCTACGAGCAGCGATCGAAGAGCATTCCCTCCAACATCCTCTGGCGGCTGTTCGTCGGAATCGACAGCCAGGGACTTTGGTGTTGTTCGTGAATGGTGATCCATTTGATTTCTTCCAGCTAGTTCAACAATGGGGCCCAAGCACATGTAACAACACTCGTGGCACCCAGTGTTATGCTCAACCTCAACCCTTGTTCACTATACATGGCTTGTGGCCTAGTAACTATTCCAATGCCCGTCTTGCTTGTCGAAGTAACGAACAATTTTTAGAGTCCAAGGTGACTGCACTTTTATCAGACTTAAATACATATTGGCCAGATGTAATAGATTATGATTTATTGGCAATCTTAAACGCTGCTGGGCTCAGCCCCGAAATCTCCAAAAACCTTGTATCCCAAGACATCCTAAGCCCCATTGGGAAGAAAACGGGAAAGAAGCCCGGCATCCACTGCAACAACAATGGTAAAACTGGGAAGTTGCAATTGTTTGAAATTGTTCTGTGTTTTGACAAGAATGGGGCTAATCTCCTTGACTGCCCTCCGTTTAGTCTCTACTTCGATTCAAGTCTGTTTGCAAATCATGGAGAAATTTTTGACATTTGGGAGATGGAGAAGGATGAATTTGCAGTTGTTTCGTGGTCAAAGCTATTGACCATTGGCCCTCTTTGTGGAATTGAATTTCCATTGTTGTTTGTAAACTCCGATGAACTTTTAATGGAGTCCAAAGAAGGACAAGTGGTTTTGTACAGTATTAAAGCTCAACAGGTCAAAGAGCTCCCAATAAAAGGGGAAAACCCGCATGGATGGAGAACCAATCGGTTTGAAGCTACTTTTTTCATTAAGAGTTTGCTACCCGTGGAAGGAAGAAATAATATCAGTTATGAGTTTTAG

Protein sequence

MVSLYFDSSLFANHDALVRKLRARISALEERMDVPRGLFAAELLGDHPLPPYAQMNILAGDLDARLANMDVAIQGLWEGVRAHQDKEGVSLTTIQDTIRQATQLVREELVSLRGEVGQLRAAIEEHSLQHPLAAVRRNRQPGTLVLFVNGDPFDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLACRSNEQFLESKVTALLSDLNTYWPDVIDYDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVLCFDKNGANLLDCPPFSLYFDSSLFANHGEIFDIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELLMESKEGQVVLYSIKAQQVKELPIKGENPHGWRTNRFEATFFIKSLLPVEGRNNISYEF

Homology

[Close]

BLAST of Clc10G19260 vs. NCBI nr
Match: XP_011651927.1 (ribonuclease MC [Cucumis sativus] >KGN58920.1 hypothetical protein Csa_001884 [Cucumis sativus])

HSP 1 Score: 188.0 bits (476), Expect = 1.7e-43
Identity = 97/195 (49.74%), Postives = 117/195 (60.00%), Query Frame = 0


Query: 145 VLFVNGDPFDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLAC-RSN 204
           +LFVNG PFDFFQLVQQWGP+ C +  G++CYAQPQP+FTIHGLWPSN+S   + C R+ 
Sbjct: 14  LLFVNGIPFDFFQLVQQWGPNIC-SPAGSKCYAQPQPMFTIHGLWPSNFSTVPILCPRTK 73

Query: 205 EQFLESKVTALLSDLNTYWPDVID------------------------------------ 264
           + F + KVT+L   LN YWPDVI                                     
Sbjct: 74  KLFPQGKVTSLEQHLNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRM 133

Query: 265 ---YDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVL 300
              YDLL ILN AGLS +  K+L+SQ++L PI   TG +PGI CN NG T KLQL EIVL
Sbjct: 134 NKTYDLLTILNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVL 193

[Close]

BLAST of Clc10G19260 vs. NCBI nr
Match: TYK25090.1 (S-RNase [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 4.1e-42
Identity = 97/196 (49.49%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 143 TLVLFVNGDPFDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLACRS 202
           +L+LFVNG PFDFFQLV+QWGP+TCN+  GTQC+AQPQP FTIHGLWPSN+SNARL C +
Sbjct: 12  SLLLFVNGYPFDFFQLVEQWGPNTCND--GTQCHAQPQPEFTIHGLWPSNFSNARLFCAT 71

Query: 203 NEQFLESKVTALLSDLNTYWPDVID----------------------------------- 262
            + F   +++ L  DL+ YWPDVI+                                   
Sbjct: 72  RKLFDNGQISLLEGDLDRYWPDVINGNNRGFWSNEWKKHGACIDPPFNITQYFQLSLDHH 131

Query: 263 --YDLLAILNAAGLSPEISKN--LVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIV 300
             YDLL ILN          N  L  +DIL+PI   T K  GI CN NG T KLQL EIV
Sbjct: 132 RTYDLLKILNGVWHRNRQMPNNGLAPKDILNPIFNATNKTAGIRCNKNGITKKLQLHEIV 191

[Close]

BLAST of Clc10G19260 vs. NCBI nr
Match: KAE8651058.1 (hypothetical protein Csa_002465 [Cucumis sativus])

HSP 1 Score: 169.9 bits (429), Expect = 4.7e-38
Identity = 91/196 (46.43%), Postives = 115/196 (58.67%), Query Frame = 0


Query: 143 TLVLFVNGD-PFDFFQLVQQWGPSTCN-NTRGTQCYAQPQPLFTIHGLWPSNYSNARLAC 202
           +LV+FVNG  PF+FFQ V+QWGP+ CN   R + C+  PQ  FTIHGLWPSN+SNA L C
Sbjct: 12  SLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLC 71

Query: 203 RSNEQFLESKVTALLSDLNTYWPD------------------------------------ 262
           +S  + + SKV +L   LN  WPD                                    
Sbjct: 72  QS--KTIYSKVISLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLN 131

Query: 263 -VIDYDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIV 300
            +  +DLL IL AAGL+P+ S+NL  Q+I++PI + T K PGI CN N KTGK QL EIV
Sbjct: 132 LLRKFDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIV 191

[Close]

BLAST of Clc10G19260 vs. NCBI nr
Match: KAE8651058.1 (hypothetical protein Csa_002465 [Cucumis sativus])

HSP 1 Score: 115.5 bits (288), Expect = 1.1e-21
Identity = 60/100 (60.00%), Postives = 78/100 (78.00%), Query Frame = 0


Query: 316 DIWEMEKDEFAVVSWSKLLTIGPLCGIEFPLLFVNSDELLMESKEGQVVLYSIKAQQVKE 375
           DIWEMEKDEF VVSWSKLLTI P  G+E PLLFV+ +E+LMES EG V++Y+ K QQ K+
Sbjct: 642 DIWEMEKDEFGVVSWSKLLTIDPPFGVEHPLLFVSCEEMLMESSEGHVIMYNNKTQQFKK 701

Query: 376 LPIKGENPHGWRTNRFEA-TFFIKSLLPVE-GRNNISYEF 414
           LPI+G+  +  + +RFEA   FIKSL+ VE G++ I+Y+F
Sbjct: 702 LPIEGDVTY-VKPHRFEAHDLFIKSLVSVEGGKDIINYDF 740

HSP 2 Score: 169.9 bits (429), Expect = 4.7e-38
Identity = 91/196 (46.43%), Postives = 115/196 (58.67%), Query Frame = 0


Query: 143 TLVLFVNGD-PFDFFQLVQQWGPSTCN-NTRGTQCYAQPQPLFTIHGLWPSNYSNARLAC 202
           +LV+FVNG  PF+FFQ V+QWGP+ CN   R + C+  PQ  FTIHGLWPSN+SNA L C
Sbjct: 12  SLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLC 71

Query: 203 RSNEQFLESKVTALLSDLNTYWPD------------------------------------ 262
           +S  + + SKV +L   LN  WPD                                    
Sbjct: 72  QS--KTIYSKVISLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLN 131

Query: 263 -VIDYDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIV 300
            +  +DLL IL AAGL+P+ S+NL  Q+I++PI + T K PGI CN N KTGK QL EIV
Sbjct: 132 LLRKFDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIV 191

[Close]

BLAST of Clc10G19260 vs. NCBI nr
Match: XP_031738547.1 (ribonuclease MC-like [Cucumis sativus] >XP_031739193.1 ribonuclease MC-like [Cucumis sativus] >KAE8651059.1 hypothetical protein Csa_001394 [Cucumis sativus] >KAE8651065.1 hypothetical protein Csa_001488 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 4.4e-36
Identity = 88/196 (44.90%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 143 TLVLFVNGD-PFDFFQLVQQWGPSTCN-NTRGTQCYAQPQPLFTIHGLWPSNYSNARLAC 202
           +LV+FVNG  PF+FFQ V+QWGP+ CN   R + C+  PQ  FTIHGLWPSN+SNA L C
Sbjct: 12  SLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLC 71

Query: 203 RSNEQFLESKVTALLSDLNTYWPD------------------------------------ 262
           +S  ++  +KV  L   LN  WPD                                    
Sbjct: 72  QSITKY--TKVLLLERQLNISWPDLKGGMNNEFWTHEWNFHGKCSDPPFSLFQYFQMSLN 131

Query: 263 -VIDYDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIV 300
            +  +D+LAIL AAGL+P+ S+N+  Q+I++PI + T K PGI C  N KTGK QL EIV
Sbjct: 132 LLQKFDVLAILKAAGLNPQTSQNIGIQNIMTPIQRTTKKYPGIRCYKNVKTGKSQLNEIV 191

[Close]

BLAST of Clc10G19260 vs. ExPASy Swiss-Prot
Match: P80196 (Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 6.9e-16
Identity = 61/198 (30.81%), Postives = 85/198 (42.93%), Query Frame = 0


Query: 144 LVLFVNGDPFDFFQLVQQWGPSTCNNTRGTQCY---AQPQPLFTIHGLWPSNYSNARLA- 203
           LVL V    FDFF  VQQW  S C +TR + CY    +P   F+IHGLWP NY + +   
Sbjct: 19  LVLCVTSQDFDFFYFVQQWPASYC-DTRRSCCYPTTGKPDEDFSIHGLWP-NYKDGKWPQ 78

Query: 204 -CRSNEQFLESKVTALLSDLNTYWPDV--------------------------------- 263
            C       ES+ + L+S +   WP +                                 
Sbjct: 79  NCDRESSLDESEFSDLISTMEKNWPSLACPSSDGLKFWSHEWLKHGTCSALNQHAYFQTA 138

Query: 264 IDY----DLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFE 300
           +D+    +LL  LN AG+ P        + I   I K  G  P I CN + + G  QL++
Sbjct: 139 LDFKTKSNLLQNLNNAGIKPRNGDYYGVESIKKAIEKGVGHTPFIECNVDSQ-GNHQLYQ 198

[Close]

BLAST of Clc10G19260 vs. ExPASy Swiss-Prot
Match: P23540 (Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.2e-15
Identity = 50/181 (27.62%), Postives = 73/181 (40.33%), Query Frame = 0


Query: 153 FDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLACRSNEQFLESKVT 212
           FD F  VQQW P+ C+  +   C       FTIHGLWP     +   C     F  +K++
Sbjct: 1   FDSFWFVQQWPPAVCSFQKSGSCPGSGLRTFTIHGLWPQGSGTSLTNCPQGSPFDITKIS 60

Query: 213 ALLSDLNTYWPDVI-------------------------------------DYDLLAILN 272
            L S LNT WP+V+                                     +YD++  L 
Sbjct: 61  HLQSQLNTLWPNVLRANNQQFWSHEWTKHGTCSESTFNQAAYFKLAVDMRNNYDIIGALR 120

Query: 273 AAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVLCFDKNGANLLD 297
                P   +    Q I   +  K GK PG+ C  + +T    L ++V CF ++G+ L+D
Sbjct: 121 PHAAGPN-GRTKSRQAIKGFLKAKFGKFPGLRCRTDPQTKVSYLVQVVACFAQDGSTLID 180

[Close]

BLAST of Clc10G19260 vs. ExPASy Swiss-Prot
Match: P42813 (Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 1.5e-15
Identity = 58/195 (29.74%), Postives = 89/195 (45.64%), Query Frame = 0


Query: 149 NGDPFDFFQLVQQWGPSTCNNTRGTQCY---AQPQPLFTIHGLWPSNYSNARLA--CRSN 208
           + + FDFF  VQQW  S C +T+   CY    +P   F IHGLWP NY +      C ++
Sbjct: 26  SSEDFDFFYFVQQWPGSYC-DTQKKCCYPNSGKPAADFGIHGLWP-NYKDGTYPSNCDAS 85

Query: 209 EQFLESKVTALLSDLNTYWP-------------------------DVIDY---------- 268
           + F  S ++ LL+ +   WP                          VID           
Sbjct: 86  KPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNL 145

Query: 269 ----DLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVL 300
               +LL  L  AG++P+  K+   + I   I +  G  P + CN +G +G  QL+++ L
Sbjct: 146 KQKTNLLGALTKAGINPD-GKSYSLESIRDSIKESIGFTPWVECNRDG-SGNSQLYQVYL 205

[Close]

BLAST of Clc10G19260 vs. ExPASy Swiss-Prot
Match: P80022 (Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 8.4e-14
Identity = 56/192 (29.17%), Postives = 88/192 (45.83%), Query Frame = 0


Query: 153 FDFFQLVQQWGPSTCNNTRGTQCY---AQPQPLFTIHGLWPSNYSNARLA-CRSNEQFLE 212
           FDFF  VQQW  S C +T+ + CY    +P   F IHGLWP+N      + C  N  + +
Sbjct: 29  FDFFYFVQQWPGSYC-DTKQSCCYPTTGKPAADFGIHGLWPNNNDGTYPSNCDPNSPYDQ 88

Query: 213 SKVTALLSDLNTYWPDVI----------------------------------------DY 272
           S+++ L+S +   WP +                                           
Sbjct: 89  SQISDLISSMQQNWPTLACPSGSGSTFWSHEWEKHGTCAESVLTNQHAYFKKALDLKNQI 148

Query: 273 DLLAILNAAGLSPE-ISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVLCFD 300
           DLL+IL  A + P+  S +LV  +I + I    G  P I CN + ++G  QL+++ +C D
Sbjct: 149 DLLSILQGADIHPDGESYDLV--NIRNAIKSAIGYTPWIQCNVD-QSGNSQLYQVYICVD 208

[Close]

BLAST of Clc10G19260 vs. ExPASy Swiss-Prot
Match: O80324 (Ribonuclease S-6 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.1e-12
Identity = 53/189 (28.04%), Postives = 81/189 (42.86%), Query Frame = 0


Query: 153 FDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSN-YSNARLACRSNEQFLESKV 212
           +++FQ  QQ+ P+ C N+  T C   P  LFT+HGLWPSN   +  + C+ N+     ++
Sbjct: 28  YNYFQFTQQYQPAVC-NSNPTPCKDPPDKLFTVHGLWPSNDVGDDPIYCK-NKTIKSQQI 87

Query: 213 TALLSDLNTYWPDVID------------------------------------------YD 272
             L + L   WP+V+D                                           +
Sbjct: 88  GNLTAQLIIIWPNVLDRTDHVGFWNRQWNKHGSCGKAPTIKDEMHYFKTVIKMYITQKQN 147

Query: 273 LLAILNAAGLSPEISKNLVSQDILSPIGKKT-GKKPGIHCNNNGKTGKLQLFEIVLCFDK 298
           +  IL+ A + PE  K     DI++ I   T  KKP + C  N +T   +L EI +C D+
Sbjct: 148 VSEILSRAKIEPE-GKIRRRDDIINAIRLGTKDKKPKLKCQKNNQT--TELVEITICSDR 207

[Close]

BLAST of Clc10G19260 vs. ExPASy TrEMBL
Match: A0A0A0LAB0 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G736680 PE=3 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 8.1e-44
Identity = 97/195 (49.74%), Postives = 117/195 (60.00%), Query Frame = 0


Query: 145 VLFVNGDPFDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLAC-RSN 204
           +LFVNG PFDFFQLVQQWGP+ C +  G++CYAQPQP+FTIHGLWPSN+S   + C R+ 
Sbjct: 14  LLFVNGIPFDFFQLVQQWGPNIC-SPAGSKCYAQPQPMFTIHGLWPSNFSTVPILCPRTK 73

Query: 205 EQFLESKVTALLSDLNTYWPDVID------------------------------------ 264
           + F + KVT+L   LN YWPDVI                                     
Sbjct: 74  KLFPQGKVTSLEQHLNKYWPDVISGKNSNFWEHEWRKHADCIDPPFTIFWYFDISLRHRM 133

Query: 265 ---YDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVL 300
              YDLL ILN AGLS +  K+L+SQ++L PI   TG +PGI CN NG T KLQL EIVL
Sbjct: 134 NKTYDLLTILNDAGLSHQTHKDLISQNVLDPIKNATGMEPGIRCNINGITKKLQLKEIVL 193

[Close]

BLAST of Clc10G19260 vs. ExPASy TrEMBL
Match: A0A5D3DP91 (Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002140 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 2.0e-42
Identity = 97/196 (49.49%), Postives = 114/196 (58.16%), Query Frame = 0


Query: 143 TLVLFVNGDPFDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLACRS 202
           +L+LFVNG PFDFFQLV+QWGP+TCN+  GTQC+AQPQP FTIHGLWPSN+SNARL C +
Sbjct: 12  SLLLFVNGYPFDFFQLVEQWGPNTCND--GTQCHAQPQPEFTIHGLWPSNFSNARLFCAT 71

Query: 203 NEQFLESKVTALLSDLNTYWPDVID----------------------------------- 262
            + F   +++ L  DL+ YWPDVI+                                   
Sbjct: 72  RKLFDNGQISLLEGDLDRYWPDVINGNNRGFWSNEWKKHGACIDPPFNITQYFQLSLDHH 131

Query: 263 --YDLLAILNAAGLSPEISKN--LVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIV 300
             YDLL ILN          N  L  +DIL+PI   T K  GI CN NG T KLQL EIV
Sbjct: 132 RTYDLLKILNGVWHRNRQMPNNGLAPKDILNPIFNATNKTAGIRCNKNGITKKLQLHEIV 191

[Close]

BLAST of Clc10G19260 vs. ExPASy TrEMBL
Match: A0A0A0LAN6 (Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G745530 PE=3 SV=1)

HSP 1 Score: 169.9 bits (429), Expect = 2.3e-38
Identity = 91/196 (46.43%), Postives = 115/196 (58.67%), Query Frame = 0


Query: 143 TLVLFVNGD-PFDFFQLVQQWGPSTCN-NTRGTQCYAQPQPLFTIHGLWPSNYSNARLAC 202
           +LV+FVNG  PF+FFQ V+QWGP+ CN   R + C+  PQ  FTIHGLWPSN+SNA L C
Sbjct: 12  SLVVFVNGGVPFEFFQFVEQWGPNVCNTGARVSPCHTPPQAKFTIHGLWPSNHSNAHLLC 71

Query: 203 RSNEQFLESKVTALLSDLNTYWPD------------------------------------ 262
           +S  + + SKV +L   LN  WPD                                    
Sbjct: 72  QS--KTIYSKVISLEGQLNISWPDLKYGNNDKFWGHEWDTHGKCSDPPFSLFQYFQISLN 131

Query: 263 -VIDYDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIV 300
            +  +DLL IL AAGL+P+ S+NL  Q+I++PI + T K PGI CN N KTGK QL EIV
Sbjct: 132 LLRKFDLLTILKAAGLNPQTSQNLAIQNIMAPIQRTTKKYPGIRCNKNVKTGKSQLNEIV 191

[Close]

BLAST of Clc10G19260 vs. ExPASy TrEMBL
Match: A0A6J1EXD5 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 2.4e-35
Identity = 82/187 (43.85%), Postives = 102/187 (54.55%), Query Frame = 0


Query: 153 FDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLACRSNEQFLESKVT 212
           FD+FQ+VQQW P+TC+   G +CYA P  +FTIHGLWPSNYSN  L C + + F  +++ 
Sbjct: 24  FDYFQMVQQWPPATCS---GVRCYANPPAMFTIHGLWPSNYSNVPLVC-AGQPFNPAQIA 83

Query: 213 ALLSDLNTYWPDVI---------------------------------------DYDLLAI 272
            L+  LNTYWPDVI                                       +YDLLAI
Sbjct: 84  TLVPQLNTYWPDVISGNNQRFWKHEWDSHGTCSDPPFNQLQYFQTTLNIRTNHNYDLLAI 143

Query: 273 LNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVLCFDKNGANL 301
           LN AGL P  +       I   I   TGKKPG+ CN N ++ K QLFEI+LCFDKNG  L
Sbjct: 144 LNTAGLGPTATNTRQYGAIEGAIQAATGKKPGLRCNKNAQSKKKQLFEIILCFDKNGVTL 203

[Close]

BLAST of Clc10G19260 vs. ExPASy TrEMBL
Match: A0A6J1F837 (Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111441728 PE=3 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 7.6e-34
Identity = 85/197 (43.15%), Postives = 109/197 (55.33%), Query Frame = 0


Query: 144 LVLFVNGDPFDFFQLVQQWGPSTCNNTRGTQCYAQPQPLFTIHGLWPSNYSNARLACRSN 203
           L+L VN   FD+FQ+VQQW P+ C++ +  +C+ QP  +FTIHGLWPSNYSNARL C + 
Sbjct: 18  LILCVNAQ-FDYFQMVQQWPPAKCSSVK-VRCHVQPPTMFTIHGLWPSNYSNARLVC-AP 77

Query: 204 EQFLESKVTALLSDLNTYWPDVI------------------------------------- 263
           + F  +++ AL   LNTYWPDVI                                     
Sbjct: 78  QPFNPTQIAALRPQLNTYWPDVIQGKNQQFWQHEWDRHGICSNPPFNQLQYFQITLNIRT 137

Query: 264 --DYDLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKT-GKLQLFEIV 301
              YDLL ILNAAGL P  +     +DI   I   TGKKPG+ CN N ++  K QL EI+
Sbjct: 138 NHSYDLLTILNAAGLGPSDTNIREYKDIEGAIQAATGKKPGLRCNINAQSKEKKQLLEII 197

[Close]

BLAST of Clc10G19260 vs. TAIR 10
Match: AT2G02990.1 (ribonuclease 1 )

HSP 1 Score: 85.5 bits (210), Expect = 1.1e-16
Identity = 58/195 (29.74%), Postives = 89/195 (45.64%), Query Frame = 0


Query: 149 NGDPFDFFQLVQQWGPSTCNNTRGTQCY---AQPQPLFTIHGLWPSNYSNARLA--CRSN 208
           + + FDFF  VQQW  S C +T+   CY    +P   F IHGLWP NY +      C ++
Sbjct: 26  SSEDFDFFYFVQQWPGSYC-DTQKKCCYPNSGKPAADFGIHGLWP-NYKDGTYPSNCDAS 85

Query: 209 EQFLESKVTALLSDLNTYWP-------------------------DVIDY---------- 268
           + F  S ++ LL+ +   WP                          VID           
Sbjct: 86  KPFDSSTISDLLTSMKKSWPTLACPSGSGEAFWEHEWEKHGTCSESVIDQHEYFQTALNL 145

Query: 269 ----DLLAILNAAGLSPEISKNLVSQDILSPIGKKTGKKPGIHCNNNGKTGKLQLFEIVL 300
               +LL  L  AG++P+  K+   + I   I +  G  P + CN +G +G  QL+++ L
Sbjct: 146 KQKTNLLGALTKAGINPD-GKSYSLESIRDSIKESIGFTPWVECNRDG-SGNSQLYQVYL 205

The following BLAST results are available for this feature:

BLAST of Clc10G19260 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011651927.1	1.7e-43	49.74	ribonuclease MC [Cucumis sativus] >KGN58920.1 hypothetical protein Csa_001884 [C...	[more]
TYK25090.1	4.1e-42	49.49	S-RNase [Cucumis melo var. makuwa]	[more]
KAE8651058.1	4.7e-38	46.43	hypothetical protein Csa_002465 [Cucumis sativus]	[more]
KAE8651058.1	1.1e-21	60.00	hypothetical protein Csa_002465 [Cucumis sativus]	[more]
XP_031738547.1	4.4e-36	44.90	ribonuclease MC-like [Cucumis sativus] >XP_031739193.1 ribonuclease MC-like [Cuc...	[more]

BLAST of Clc10G19260 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P80196	6.9e-16	30.81	Intracellular ribonuclease LX OS=Solanum lycopersicum OX=4081 GN=RNALX PE=1 SV=2	[more]
P23540	1.2e-15	27.62	Ribonuclease MC OS=Momordica charantia OX=3673 PE=1 SV=1	[more]
P42813	1.5e-15	29.74	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1	[more]
P80022	8.4e-14	29.17	Extracellular ribonuclease LE OS=Solanum lycopersicum OX=4081 PE=1 SV=2	[more]
O80324	2.1e-12	28.04	Ribonuclease S-6 OS=Pyrus pyrifolia OX=3767 PE=1 SV=1	[more]

BLAST of Clc10G19260 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LAB0	8.1e-44	49.74	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G736680 PE=3 SV=1	[more]
A0A5D3DP91	2.0e-42	49.49	Ribonuclease T(2) OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A0A0LAN6	2.3e-38	46.43	Ribonuclease T(2) OS=Cucumis sativus OX=3659 GN=Csa_3G745530 PE=3 SV=1	[more]
A0A6J1EXD5	2.4e-35	43.85	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111439251 PE=3 SV=1	[more]
A0A6J1F837	7.6e-34	43.15	Ribonuclease T(2) OS=Cucurbita moschata OX=3662 GN=LOC111441728 PE=3 SV=1	[more]

BLAST of Clc10G19260 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G02990.1	1.1e-16	29.74	ribonuclease 1	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 11..31
None	No IPR available	PANTHER	PTHR11240:SF49	RIBONUCLEASE 3	coord: 146..225 coord: 229..298
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 148..226 e-value: 1.2E-18 score: 69.6
IPR036430	Ribonuclease T2-like superfamily	GENE3D	3.90.730.10		coord: 227..307 e-value: 2.4E-11 score: 46.0
IPR036430	Ribonuclease T2-like superfamily	SUPERFAMILY	55895	Ribonuclease Rh-like	coord: 151..299
IPR001568	Ribonuclease T2-like	PFAM	PF00445	Ribonuclease_T2	coord: 153..226 e-value: 1.8E-15 score: 57.6 coord: 227..296 e-value: 3.2E-6 score: 27.4
IPR001568	Ribonuclease T2-like	PANTHER	PTHR11240	RIBONUCLEASE T2	coord: 146..225 coord: 229..298
IPR018188	Ribonuclease T2, His active site 1	PROSITE	PS00530	RNASE_T2_1	coord: 183..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G19260.2	Clc10G19260.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016070	RNA metabolic process
cellular_component	GO:0110165	cellular anatomical entity
molecular_function	GO:0033897	ribonuclease T2 activity
molecular_function	GO:0003723	RNA binding