Clc10G13390 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G13390
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L12, chloroplastic-like
Location	ClcChr10: 27001721 .. 27002513 (+)
RNA-Seq Expression	Clc10G13390
Synteny	Clc10G13390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAAAAGTTCCGAGGGCAATTTCGTCCAAAACAGAATTCAAATTTAGCCTTTCATTTCTTCAAATCACTGTACTGCAAGTCTTCAACTTTATCCTATCTTCTTCTCCAAATTCTCTTCTCTTTTTTCTCTCTTCAAAAATGTCTTCCACTCTCTCCACTGCATCTCTCCGATCCCCATCTTCTTCTTCATCCTCTTACCCATCAAATTTCTCCCATTCCCTCAAACCCACTCCTCTTAATTTCCCCTTTTCATTCTCCCCCACCAATCTCTCACTTCGTCTCGTTCGTCACCGCCCAATCTCCGCCGTCGCTGTGCCGGAGAAAGTTTCAGATATCGGCGATGTCATCTCCAAATTGACTCTAGAAGAGGCTCGAACCCTTGTTGATTACCTCCAAGAGAAACTTGGCGTTTCCGCCGCGGCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGAGACGTAGCGGCCGCCGTCGTCGAGGAGAAAACAGAGTTCGATGTTGTTATTGAGGAAGTGCCCAGTAATGCGAGGATTGCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAAGAGCTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGAATTTCGAAGGAGGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGTGCAAAGATTGCCATTGTTTGATTTGGCTGGTTAGTTTCTTCAATTCTTAAGGTTTACAATTTAGGCATTCTGGTGGAATTAGAGATGGGTTTTTTTTTT

mRNA sequence

CAGAAAAGTTCCGAGGGCAATTTCGTCCAAAACAGAATTCAAATTTAGCCTTTCATTTCTTCAAATCACTGTACTGCAAGTCTTCAACTTTATCCTATCTTCTTCTCCAAATTCTCTTCTCTTTTTTCTCTCTTCAAAAATGTCTTCCACTCTCTCCACTGCATCTCTCCGATCCCCATCTTCTTCTTCATCCTCTTACCCATCAAATTTCTCCCATTCCCTCAAACCCACTCCTCTTAATTTCCCCTTTTCATTCTCCCCCACCAATCTCTCACTTCGTCTCGTTCGTCACCGCCCAATCTCCGCCGTCGCTGTGCCGGAGAAAGTTTCAGATATCGGCGATGTCATCTCCAAATTGACTCTAGAAGAGGCTCGAACCCTTGTTGATTACCTCCAAGAGAAACTTGGCGTTTCCGCCGCGGCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGAGACGTAGCGGCCGCCGTCGTCGAGGAGAAAACAGAGTTCGATGTTGTTATTGAGGAAGTGCCCAGTAATGCGAGGATTGCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAAGAGCTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGAATTTCGAAGGAGGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGTGCAAAGATTGCCATTGTTTGATTTGGCTGGTTAGTTTCTTCAATTCTTAAGGTTTACAATTTAGGCATTCTGGTGGAATTAGAGATGGGTTTTTTTTTT

Coding sequence (CDS)

ATGTCTTCCACTCTCTCCACTGCATCTCTCCGATCCCCATCTTCTTCTTCATCCTCTTACCCATCAAATTTCTCCCATTCCCTCAAACCCACTCCTCTTAATTTCCCCTTTTCATTCTCCCCCACCAATCTCTCACTTCGTCTCGTTCGTCACCGCCCAATCTCCGCCGTCGCTGTGCCGGAGAAAGTTTCAGATATCGGCGATGTCATCTCCAAATTGACTCTAGAAGAGGCTCGAACCCTTGTTGATTACCTCCAAGAGAAACTTGGCGTTTCCGCCGCGGCCTTCGCCCCTGCCGCCGTCGCCGTCGCTCCCGGCGCTGCTGCCGGAGGAGACGTAGCGGCCGCCGTCGTCGAGGAGAAAACAGAGTTCGATGTTGTTATTGAGGAAGTGCCCAGTAATGCGAGGATTGCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAAGAGCTGATTGAAGGTTTGCCGAAGAAATTTAAAGAAGGAATTTCGAAGGAGGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGTGCAAAGATTGCCATTGTTTGA

Protein sequence

MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of Clc10G13390 vs. NCBI nr
Match: XP_038903222.1 (50S ribosomal protein L12, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 313.5 bits (802), Expect = 1.2e-81
Identity = 182/191 (95.29%), Postives = 185/191 (96.86%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 60
           MSSTLSTASLRSPSSS SSYPSNFSHSLKPTPLNFPFSFS TNLSLRLV HRPISAVAVP
Sbjct: 1   MSSTLSTASLRSPSSSLSSYPSNFSHSLKPTPLNFPFSFSSTNLSLRLVHHRPISAVAVP 60

Query: 61  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 120
           EKVS+IGDVIS+LTLEEARTLVDYLQEKLGVSAA+FAPA VAVAPGAAAGGD AAA VEE
Sbjct: 61  EKVSEIGDVISQLTLEEARTLVDYLQEKLGVSAASFAPAVVAVAPGAAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of Clc10G13390 vs. NCBI nr
Match: XP_008443526.1 (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053661.1 50S ribosomal protein L12 [Cucumis melo var. makuwa] >TYK00831.1 50S ribosomal protein L12 [Cucumis melo var. makuwa])

HSP 1 Score: 313.2 bits (801), Expect = 1.6e-81
Identity = 183/193 (94.82%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLR--SPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVA 60
           MSSTLSTASLR  SPSSSSSSYPSNFSHSLKPTPL FPFSF+PTNLSLRL+ HRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVV 120
           VPEKVS+IGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAVAVAPGAAAGGD AAA V
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 192
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of Clc10G13390 vs. NCBI nr
Match: XP_004141094.1 (50S ribosomal protein L12, chloroplastic [Cucumis sativus] >KGN59676.1 hypothetical protein Csa_002198 [Cucumis sativus])

HSP 1 Score: 309.3 bits (791), Expect = 2.3e-80
Identity = 177/191 (92.67%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 60
           MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPL FPFSF+PTNLSLRL+ HRPISAVAVP
Sbjct: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAVP 60

Query: 61  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 120
           EKVS+IGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPA   VAPG AAGGD AAA VEE
Sbjct: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKI+IV
Sbjct: 181 LEEAGAKISIV 191

[Close]

BLAST of Clc10G13390 vs. NCBI nr
Match: XP_022983181.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 287.7 bits (735), Expect = 7.2e-74
Identity = 171/191 (89.53%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 60
           MSS LSTASLR PS SSSSYPSNFSHSL+ T + FPFSFS TNLSLR V  RP+SA AVP
Sbjct: 1   MSSALSTASLRLPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 120
           EKV++IGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAA+GGD AAA VEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDDAAA-VEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of Clc10G13390 vs. NCBI nr
Match: XP_022934872.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 287.3 bits (734), Expect = 9.4e-74
Identity = 171/191 (89.53%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 60
           MSS LSTASLR PS SSSSYPSNFSHSL+ T + FPFSFS TNLSLR V  RP+SA AVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 120
           EKV++IGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAV VAPGAAAGGD AAA VEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAA-VEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of Clc10G13390 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.4e-50
Identity = 131/193 (67.88%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTP---LNFPFSFSPTNLSLRLVRHRPISAV 60
           M+STLST +LRSPS S++S     +H+  P P   L FP   +P     R    RP++AV
Sbjct: 1   MASTLSTITLRSPSPSTAS----STHASIPFPKKALEFPIR-TPKLHHRRATFLRPLAAV 60

Query: 61  AVPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAV 120
             PEKV  +GD IS LTL +A+ LV+YLQ+KLGV+AA+FAPAAVA APGAAA    A AV
Sbjct: 61  EAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAPAV 120

Query: 121 VEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
           VEEKTEFDVVI+EVPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDA
Sbjct: 121 VEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDA 180

Query: 181 KKQLEEAGAKIAI 191
           KKQLEEAGAK++I
Sbjct: 181 KKQLEEAGAKVSI 185

[Close]

BLAST of Clc10G13390 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 1.3e-49
Identity = 129/193 (66.84%), Postives = 152/193 (78.76%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTP---LNFPFSFSPTNLSLRLVRHRPISAV 60
           M+STLST +LRSPS S+++     +H+  P P   L FP   +P   + R    RP++AV
Sbjct: 1   MASTLSTITLRSPSPSTAT----STHASIPFPKKTLEFPIR-TPKLQNRRATFLRPLAAV 60

Query: 61  AVPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAV 120
             PEKV  +GD IS LTL +A+ LV+YLQ+KLGV+AA+FAPAAV  APGAAA    A AV
Sbjct: 61  EAPEKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAV 120

Query: 121 VEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
           VEEKTEFDVVI+EVPSNARIA IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDA
Sbjct: 121 VEEKTEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDA 180

Query: 181 KKQLEEAGAKIAI 191
           KKQLEEAGAK++I
Sbjct: 181 KKQLEEAGAKVSI 185

[Close]

BLAST of Clc10G13390 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 193.4 bits (490), Expect = 2.4e-48
Identity = 122/194 (62.89%), Postives = 148/194 (76.29%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSL---RLVRHRPISAV 60
           M++T + A+L  P  S +S+P++ +    P PL FPF  +   +SL   R  R RPI+AV
Sbjct: 1   MAATTTMATLNLP--SLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60

Query: 61  AVPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAV 120
             PEK+  +G  +S LTLEEAR LVD+LQ+KLGVSAA+FAPAA   APGA A    AA  
Sbjct: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAPA 120

Query: 121 VEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDA 180
           VEEKTEFDV I+EVPSNARI+VIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AEDA
Sbjct: 121 VEEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDA 180

Query: 181 KKQLEEAGAKIAIV 192
           KKQLE+AGAK++IV
Sbjct: 181 KKQLEDAGAKVSIV 189

[Close]

BLAST of Clc10G13390 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 185.7 bits (470), Expect = 5.1e-46
Identity = 125/190 (65.79%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 2   SSTLSTA-SLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 61
           S+TLS A ++RS S  +S+   +F    KPT + FPF  S ++ S R +  RPISAV  P
Sbjct: 3   STTLSIATTIRSSSPLTSASTHHFLS--KPTAIEFPFRLSSSS-SHRAINLRPISAVEAP 62

Query: 62  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 121
           EK+  IG  IS LTLEEAR LVDYLQ+K GVS  + APAA AVA  A  G   AAAVVEE
Sbjct: 63  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAVVEE 122

Query: 122 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 181
           +TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK 
Sbjct: 123 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 182

Query: 182 LEEAGAKIAI 191
           LEEAGAK++I
Sbjct: 183 LEEAGAKVSI 186

[Close]

BLAST of Clc10G13390 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 8.1e-44
Identity = 124/195 (63.59%), Postives = 144/195 (73.85%), Query Frame = 0


Query: 2   SSTLSTASLRSPSSSSSSYPSNFSHSLKP---TPLNFPFSF---SPTNLSLRLVRHRPIS 61
           S+TLS A+    +  SSSYP+  S +  P   T + FP  F   S + L+ R    RPI+
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  AVAVPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAA 121
           AV  PEK+  IG  IS LTLEEAR LVDYLQ+K GVS  + APAA AVA  A  G   AA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AA 122

Query: 122 AVVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 181
           AVVEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE
Sbjct: 123 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 182

Query: 182 DAKKQLEEAGAKIAI 191
           +AKK LEEAGAK++I
Sbjct: 183 EAKKTLEEAGAKVSI 190

[Close]

BLAST of Clc10G13390 vs. ExPASy TrEMBL
Match: A0A5A7UJJ4 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00330 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.7e-82
Identity = 183/193 (94.82%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLR--SPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVA 60
           MSSTLSTASLR  SPSSSSSSYPSNFSHSLKPTPL FPFSF+PTNLSLRL+ HRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVV 120
           VPEKVS+IGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAVAVAPGAAAGGD AAA V
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 192
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of Clc10G13390 vs. ExPASy TrEMBL
Match: A0A1S3B8B3 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487096 PE=3 SV=1)

HSP 1 Score: 313.2 bits (801), Expect = 7.7e-82
Identity = 183/193 (94.82%), Postives = 187/193 (96.89%), Query Frame = 0


Query: 1   MSSTLSTASLR--SPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVA 60
           MSSTLSTASLR  SPSSSSSSYPSNFSHSLKPTPL FPFSF+PTNLSLRL+ HRPISAVA
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVV 120
           VPEKVS+IGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAVAVAPGAAAGGD AAA V
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 192
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of Clc10G13390 vs. ExPASy TrEMBL
Match: A0A0A0LHZ4 (Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1)

HSP 1 Score: 309.3 bits (791), Expect = 1.1e-80
Identity = 177/191 (92.67%), Postives = 183/191 (95.81%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 60
           MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPL FPFSF+PTNLSLRL+ HRPISAVAVP
Sbjct: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAVP 60

Query: 61  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 120
           EKVS+IGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPA   VAPG AAGGD AAA VEE
Sbjct: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARIAVIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKI+IV
Sbjct: 181 LEEAGAKISIV 191

[Close]

BLAST of Clc10G13390 vs. ExPASy TrEMBL
Match: A0A6J1J1D9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481837 PE=3 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 3.5e-74
Identity = 171/191 (89.53%), Postives = 178/191 (93.19%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 60
           MSS LSTASLR PS SSSSYPSNFSHSL+ T + FPFSFS TNLSLR V  RP+SA AVP
Sbjct: 1   MSSALSTASLRLPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 120
           EKV++IGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAA+GGD AAA VEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDDAAA-VEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of Clc10G13390 vs. ExPASy TrEMBL
Match: A0A6J1F403 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441912 PE=3 SV=1)

HSP 1 Score: 287.3 bits (734), Expect = 4.6e-74
Identity = 171/191 (89.53%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 60
           MSS LSTASLR PS SSSSYPSNFSHSL+ T + FPFSFS TNLSLR V  RP+SA AVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 120
           EKV++IGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAV VAPGAAAGGD AAA VEE
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAA-VEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 192
           LEEAGAKIAIV
Sbjct: 181 LEEAGAKIAIV 190

[Close]

BLAST of Clc10G13390 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-47
Identity = 125/190 (65.79%), Postives = 146/190 (76.84%), Query Frame = 0


Query: 2   SSTLSTA-SLRSPSSSSSSYPSNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAVP 61
           S+TLS A ++RS S  +S+   +F    KPT + FPF  S ++ S R +  RPISAV  P
Sbjct: 3   STTLSIATTIRSSSPLTSASTHHFLS--KPTAIEFPFRLSSSS-SHRAINLRPISAVEAP 62

Query: 62  EKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVVEE 121
           EK+  IG  IS LTLEEAR LVDYLQ+K GVS  + APAA AVA  A  G   AAAVVEE
Sbjct: 63  EKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AAAVVEE 122

Query: 122 KTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 181
           +TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK 
Sbjct: 123 QTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKT 182

Query: 182 LEEAGAKIAI 191
           LEEAGAK++I
Sbjct: 183 LEEAGAKVSI 186

[Close]

BLAST of Clc10G13390 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 178.3 bits (451), Expect = 5.7e-45
Identity = 124/195 (63.59%), Postives = 144/195 (73.85%), Query Frame = 0


Query: 2   SSTLSTASLRSPSSSSSSYPSNFSHSLKP---TPLNFPFSF---SPTNLSLRLVRHRPIS 61
           S+TLS A+    +  SSSYP+  S +  P   T + FP  F   S + L+ R    RPI+
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  AVAVPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAA 121
           AV  PEK+  IG  IS LTLEEAR LVDYLQ+K GVS  + APAA AVA  A  G   AA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAPADGG---AA 122

Query: 122 AVVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAE 181
           AVVEE+TEFDVVI EVPS++RIAVIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE
Sbjct: 123 AVVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAE 182

Query: 182 DAKKQLEEAGAKIAI 191
           +AKK LEEAGAK++I
Sbjct: 183 EAKKTLEEAGAKVSI 190

[Close]

BLAST of Clc10G13390 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 157.5 bits (397), Expect = 1.0e-38
Identity = 106/193 (54.92%), Postives = 131/193 (67.88%), Query Frame = 0


Query: 2   SSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLNFPFSF---SPTNLSLRLVRHRPISAVA 61
           ++TLS A+    SS SS   S      +P  + FPFSF   S + LS R +   PISAV 
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVK 62

Query: 62  VPEKVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAAAGGDVAAAVV 121
            P+K+  IG  IS LTLEE+R LVDY+Q+K GVS    APAA A+ P    GG  A A V
Sbjct: 63  TPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--ATASV 122

Query: 122 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 181
           E +T FDVVI +VP   RIAVI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE+ K
Sbjct: 123 ERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDK 182

Query: 182 KQLEEAGAKIAIV 192
            QLEEAGAK++IV
Sbjct: 183 TQLEEAGAKVSIV 193

[Close]

BLAST of Clc10G13390 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 78.2 bits (191), Expect = 8.1e-15
Identity = 67/176 (38.07%), Postives = 99/176 (56.25%), Query Frame = 0


Query: 22  SNFSHSLKPTPLNFPFSFSPTNLSLRLVRHRPISAVAV-PEKVSDIGDVISKLTLEEART 81
           S+FS  LK T          +++ L  ++ R  S+ A   E VS I + +S LTL E   
Sbjct: 9   SHFSRVLKSTETR------SSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMD 68

Query: 82  LVDYLQEKLGVS----AAAFAPAAVAVAPGA--AAGGDVAAAVVEEKTEFDVVIEEVPSN 141
           L + L++KL +S     AA  P       GA  +AGG+      E KT FDV+++   + 
Sbjct: 69  LTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAV 128

Query: 142 ARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 191
           ++I VIK VR +T+L LKEAK+L+E  P   K+G+SKEEAE   ++L+  GAK+A+
Sbjct: 129 SKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of Clc10G13390 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 62.0 bits (149), Expect = 6.0e-10
Identity = 53/143 (37.06%), Postives = 75/143 (52.45%), Query Frame = 0


Query: 52  RPISAVAVPE----KVSDIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGA 111
           R + AVA PE    K+  I D + KL   E          K+G++    A A       A
Sbjct: 27  RHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVAVTGSVGDA 86

Query: 112 AAGGDVAAAVVEEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKE 171
           +A  +   A   EKT FDV +E+  + ++I VIK +RA T L LKEAK L+E  P   K 
Sbjct: 87  SASTETKTA---EKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKN 146

Query: 172 GISKEEAEDAKKQLEEAGAKIAI 191
           G++KEEAE   ++L+  GA +A+
Sbjct: 147 GLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of Clc10G13390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903222.1	1.2e-81	95.29	50S ribosomal protein L12, chloroplastic-like [Benincasa hispida]	[more]
XP_008443526.1	1.6e-81	94.82	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Cucumis melo] >KAA0053...	[more]
XP_004141094.1	2.3e-80	92.67	50S ribosomal protein L12, chloroplastic [Cucumis sativus] >KGN59676.1 hypotheti...	[more]
XP_022983181.1	7.2e-74	89.53	50S ribosomal protein L12, chloroplastic-like [Cucurbita maxima]	[more]
XP_022934872.1	9.4e-74	89.53	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata]	[more]

BLAST of Clc10G13390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P24929	4.4e-50	67.88	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36688	1.3e-49	66.84	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P02398	2.4e-48	62.89	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36212	5.1e-46	65.79	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	8.1e-44	63.59	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of Clc10G13390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UJJ4	7.7e-82	94.82	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B8B3	7.7e-82	94.82	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LHZ4	1.1e-80	92.67	Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1	[more]
A0A6J1J1D9	3.5e-74	89.53	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A6J1F403	4.6e-74	89.53	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]

BLAST of Clc10G13390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	3.6e-47	65.79	ribosomal protein L12-C	[more]
AT3G27830.1	5.7e-45	63.59	ribosomal protein L12-A	[more]
AT3G27840.1	1.0e-38	54.92	ribosomal protein L12-B	[more]
AT4G36420.1	8.1e-15	38.07	Ribosomal protein L12 family protein	[more]
AT4G37660.1	6.0e-10	37.06	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 174..191
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..190
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 124..190 e-value: 4.7E-24 score: 84.5
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 64..190 e-value: 1.1E-32 score: 111.0
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..190
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 58..191 score: 22.83172
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 61..190 e-value: 9.34174E-41 score: 132.664
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 62..110 e-value: 3.0E-14 score: 52.4
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 62..119 e-value: 2.7E-13 score: 51.7
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 62..126
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 120..190 e-value: 2.1E-25 score: 90.6
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 119..190

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G13390.1	Clc10G13390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome