Clc10G13180 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G13180
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	LOB domain-containing protein
Location	ClcChr10: 26763774 .. 26766846 (+)
RNA-Seq Expression	Clc10G13180
Synteny	Clc10G13180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCCCTTTGCCTTCTCTCTCTCTTACCCTTTTGTGATGATCACTGTTTCAGCAGGTTTTCTCTCTCCTTTATATCACCCATTAGGGTTTTCTTTCTCTCTCTCTCACATGTAAACATTATATAGGGATATCCCATAAATGTTCCTCTTTTTCTCTCTTTCTATGGCTTCAACTTCATTTTGCTTAAGCTTTTCATACAAGAGATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGTAATAACCCTTTTTAATTTGTTTAATTTTCACTACTTATTTTCTACCCTTTTTTTAAATTCAATTTTTTTTCCTCACATCATCATCATCTCCCTCTAAATCTCATCGAGCTACTAATCGGGTGTTTCTTAATTTTTTTTTGAAGAGATTATTTTTGGTGGGACTTCGAAGTCGATAATACAAACAGTTCGGGGAGCATTTTTTTTTTTGTTTTAAGGAGAAAAATCAAAATTTTGATAAGACTTTAATCTAAAAATTTGAGAGGTGTGTGTTGGTGGGTATGGAAGAGATTATTATAGGGGAAGGGGACCTTATAGATTTTATGAAGGGAGAAGGAAATTAAACCAAAAATAATGAATTGAAAGGGGAAAAAATTCAAGTATTGATGTAGGAGAGAGAAAATAGAGAGAGACAAAGAGGTAAGGGGAGGAGAGAGAAATTAGGGCCATTTTAATTTGATTCACACCTAGGGACAAGAAACATGCATTGAGGGCTATGCCCTTTGCCTTTGGATGCAATTAGGGGAAAGGCCAAGTGACCTTCTACCAAATTTTATACAAAACCCTCAACTTTCAACAGGGAAAACCTATCTTTTTCTTCTTTTTCTCTCTCAAATTTTCAAACTATCATGTTTCGAGCAATATATGATTGCAACTTACAATTATATCCCTAGTTTTACCACTTGATAAAGTTTTGTATATCAGGATATATATATATATATATATCTCAAAATTATGCCCATATTATACAATTGTATACAATCAAAAAATGTTTGGTTGGTGGGGGTAAATAAAAGCTTTTGTAATTAGGTAAACTCAAGATTAAGAAACTATCCTTCTTTTATTTATATATATATATATATATATATATATATTTAGAATTCCACGTTGAGTAAAAAAGAGATTCTCTTAGTCGAGAGTTCATGCTCAATATCAGTTGAAGCTATATTCATGTTGACAAAAATAAAACTTACATATATATTATTTGTCATGAATTTATTTATGTAATTTCAAGATACATAAATTTGATTGACTCTCTCAAATCTTATTCGACCTAGTTAAGATGTTTTGGTACATTTACCAAATCTCTCTTTTCTATTAGTTTTTTTTTTTTTTTTTTGTTAAAACAAACTCTCTCAAACACTATTTTCAAGAAAACCCAAATGAAATTACGAGTCAAATCTAAAAGATTATATGAATGTATGTAAGAAAATAATACACATACAAGGGTGTGTGGACTCACAGATCATCACATAGGAAGGTTACCCTAAAATAATTCAAATTGCAAATTTAGTTTGAGAAGAAATCTCCAATGGTAAGAAAGACGGCTCTGAGCGACCAAAAAAAAGGTACAAAAAATTAAGGTTGTCGTATAGCTGTAACAAAGAGAACTCAGCAGTGTGTGTTTGTGTGTTTTTTTCAGCAACAATTTCATATTTAAAACCATGAATTTCTGGTCTCTCAAAATATATATACTCTCCCTATCTTCTCTCTCAGCTTTCTAGACCTACAAAATCTTCAAAATTCAGCCTAAAATTCATCAAAGGTTCAATTTTTACACACCCCCATTTCATAAAGCTTCAAACTTTTTTCTTCTTACATAACTAATTTTGATAATATTTCACTAAAAATATTGTAATTTTCATATATATATTTGTTTCTCTCTTTGTTCTTGACATATCTTTCTTTTTCTTTAAACCCTTTTTTTCATTTGTAGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCATATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAATGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATTGATATATATCAAATCTTTATAATTTGATCATCACAAGTGGGATAATATATATTCTCATATGTTGATATGGGTGTGTGAAAATTTTATGCATTTTGATTTATAAATATAAATGGTAATTACAAATCACACCTTTTTAATTAGTCTAATTCGTAAATTATATCTCTATGTTTAAAAAACTTGGTTTCAAACATTCTTGTAATTTGCAAAATCTAAAGATCAGAAGTACCCTTTTGTTGGATATTAAATATATATCTGTGTGACATATATAGAATAAGTTTGGTATATCAATATTTTTTTTTTTTGGTTAAAGTTGACCAATAAAAGGGGGGGTATGATTTGCAAATCATAAGAATCTTTGGAGTCATTTTTAAAATTTAGAGATATGACTTTTGAAATAGACTAAAGTATGAAGGTGCAATTTGCAATTATCTTGGTATATATAAATAAATATGTGTTGTATATTTTTTAAGGTTTGTCCATGCCCTTGTAGGGTTTGATCTCTATCTTAAATACCTCTTTGGAATGATGAGGGGATTTTAATTAATGTAACCATTTCTATTATTAGTGGTTTTATCTAATTGTCATCTTTTGTGTA

mRNA sequence

ATTCCCTTTGCCTTCTCTCTCTCTTACCCTTTTGTGATGATCACTGTTTCAGCAGGTTTTCTCTCTCCTTTATATCACCCATTAGGGTTTTCTTTCTCTCTCTCTCACATGTAAACATTATATAGGGATATCCCATAAATGTTCCTCTTTTTCTCTCTTTCTATGGCTTCAACTTCATTTTGCTTAAGCTTTTCATACAAGAGATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCATATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAATGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATTGATATATATCAAATCTTTATAATTTGATCATCACAAGTGGGATAATATATATTCTCATATGTTGATATGGGTGTGTGAAAATTTTATGCATTTTGATTTATAAATATAAATGGTAATTACAAATCACACCTTTTTAATTAGTCTAATTCGTAAATTATATCTCTATGTTTAAAAAACTTGGTTTCAAACATTCTTGTAATTTGCAAAATCTAAAGATCAGAAGTACCCTTTTGTTGGATATTAAATATATATCTGTGTGACATATATAGAATAAGTTTGGTATATCAATATTTTTTTTTTTTGGTTAAAGTTGACCAATAAAAGGGGGGGTATGATTTGCAAATCATAAGAATCTTTGGAGTCATTTTTAAAATTTAGAGATATGACTTTTGAAATAGACTAAAGTATGAAGGTGCAATTTGCAATTATCTTGGTATATATAAATAAATATGTGTTGTATATTTTTTAAGGTTTGTCCATGCCCTTGTAGGGTTTGATCTCTATCTTAAATACCTCTTTGGAATGATGAGGGGATTTTAATTAATGTAACCATTTCTATTATTAGTGGTTTTATCTAATTGTCATCTTTTGTGTA

Coding sequence (CDS)

ATGTTGAAACAACAGCTTACAGAAAGGAGAAAAAATTATTGGAAGATGTCTTCTTCCACCTACTCCAATTCTCCCTGTGCAGCCTGCAAGTTCCTACGTCGAAAATGCCTACCGGATTGTGTTTTCGCACCATATTTCCCGCCCGAAGAGCCCCAAAAGTTCGCCAATGTCCACAAGATCTTCGGCGCCAGCAATGTTAGTAAACTGCTGAATGAAGTCCAGCCGCATCAGCGGGAGGACGCTGTGAACTCGCTCGCCTACGAGGCCGAGGCAAGGATGAAAGACCCTGTCTATGGCTGCGTTGGTGCCATCTCTATACTCCAAAGGCAAGTCATCAAGCTCCAAAAAGAGCTTGACGCTACCAACGCCGACCTCATTCGCTATGCCTGCAGCGAAATCCCCACTCCATCTCCGTCCTCGTCATCGCAATACGCTCGAAGGTCGTCGTCGACGAGCCACGAAGGAAGCTCATCTACCTCTAGCTATGGTCATTACTATTCTGGTCTCTACTTTTCTCCATGGAGTAACAACAATAATGGCCCTTGTGGAGATGGCCATTGA

Protein sequence

MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH

Homology

[Close]

BLAST of Clc10G13180 vs. NCBI nr
Match: XP_038905774.1 (LOB domain-containing protein 25-like [Benincasa hispida])

HSP 1 Score: 369.8 bits (948), Expect = 1.4e-98
Identity = 183/186 (98.39%), Postives = 184/186 (98.92%), Query Frame = 0


Query: 1   MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI 60
           MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI
Sbjct: 1   MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI 60

Query: 61  FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA 120
           FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA
Sbjct: 61  FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA 120

Query: 121 TNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNG 180
           TNADLIRYACSEIP PSPSSSSQYAR+SSSTSHE SSSTSSYGHYYSGLYFSPWSNNNNG
Sbjct: 121 TNADLIRYACSEIPAPSPSSSSQYARKSSSTSHEASSSTSSYGHYYSGLYFSPWSNNNNG 180

Query: 181 PCGDGH 187
           PCGDGH
Sbjct: 181 PCGDGH 186

[Close]

BLAST of Clc10G13180 vs. NCBI nr
Match: XP_004141196.1 (LOB domain-containing protein 25 isoform X1 [Cucumis sativus])

HSP 1 Score: 366.7 bits (940), Expect = 1.2e-97
Identity = 184/189 (97.35%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MLKQQLTERR---KNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60
           MLKQQLTERR   KNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV
Sbjct: 1   MLKQQLTERRERGKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60

Query: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120
           HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE
Sbjct: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120

Query: 121 LDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNN 180
           LDATNADLIRYACSEIP PSPSSSSQYARRSSSTSHEGSSSTSSYGHYY+GLYFSPWSNN
Sbjct: 121 LDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNN 180

Query: 181 NNGPCGDGH 187
           NNGPCGDGH
Sbjct: 181 NNGPCGDGH 189

[Close]

BLAST of Clc10G13180 vs. NCBI nr
Match: XP_022152200.1 (LOB domain-containing protein 25-like [Momordica charantia])

HSP 1 Score: 350.5 bits (898), Expect = 8.8e-93
Identity = 179/188 (95.21%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI 60
           MLK QLTERRKNYWKM+SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI
Sbjct: 1   MLK-QLTERRKNYWKMASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI 60

Query: 61  FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA 120
           FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA
Sbjct: 61  FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA 120

Query: 121 TNADLIRYACSEI--PTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNN 180
           TNA+LIRYAC+EI  P+PSPSSSSQYARRSSST+HEGSSSTSSYGHYYSGLYFSPWS NN
Sbjct: 121 TNANLIRYACNEIPAPSPSPSSSSQYARRSSSTNHEGSSSTSSYGHYYSGLYFSPWS-NN 180

Query: 181 NGPCGDGH 187
           NGPCGDGH
Sbjct: 181 NGPCGDGH 186

[Close]

BLAST of Clc10G13180 vs. NCBI nr
Match: XP_011652293.1 (LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypothetical protein Csa_001141 [Cucumis sativus])

HSP 1 Score: 342.0 bits (876), Expect = 3.1e-90
Identity = 169/171 (98.83%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 16  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 76  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPT 135
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIP 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPA 120

Query: 136 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH 187
           PSPSSSSQYARRSSSTSHEGSSSTSSYGHYY+GLYFSPWSNNNNGPCGDGH
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGH 171

[Close]

BLAST of Clc10G13180 vs. NCBI nr
Match: XP_008443563.1 (PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa] >TYK00802.1 LOB domain-containing protein 25-like [Cucumis melo var. makuwa])

HSP 1 Score: 340.9 bits (873), Expect = 7.0e-90
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 16  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 76  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPT 135
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 136 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH 187
           PSPSSSSQYARRSSSTSHEGSSSTSSYGHYY+GLYFSPWSNNNNGPCGDGH
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGH 171

[Close]

BLAST of Clc10G13180 vs. ExPASy Swiss-Prot
Match: Q8L8Q3 (LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 SV=3)

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-51
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 19  STYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQR 78
           S Y+NSPCAACKFLRRKC  DCVFAPYFPPEEP KFANVH+IFGASNVSK+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 79  EDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYA 130
           EDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+EL+ TNADL+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Clc10G13180 vs. ExPASy Swiss-Prot
Match: Q9FML4 (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 3.3e-50
Identity = 96/124 (77.42%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 17  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 76
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTP 136
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NADL  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 SPSS 141
           +P +
Sbjct: 123 APGN 126

[Close]

BLAST of Clc10G13180 vs. ExPASy Swiss-Prot
Match: O04479 (Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 8.7e-43
Identity = 78/111 (70.27%), Postives = 97/111 (87.39%), Query Frame = 0


Query: 18  SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQ 77
           +S+ +NSPCAACKFLRRKC P+CVFAPYFPP++PQKFANVHK+FGASNV+KLLNE+ P Q
Sbjct: 2   ASSSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQ 61

Query: 78  REDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRY 129
           REDAVNSLAYEA+ R++DPVYGCVG IS+LQ Q+ +LQ +L    ++L +Y
Sbjct: 62  REDAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY 112

[Close]

BLAST of Clc10G13180 vs. ExPASy Swiss-Prot
Match: A2WXT0 (LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 PE=3 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 76/121 (62.81%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 22  SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 81
           + SPCAACKFLRRKC PDCVFAPYFPP+ PQKF +VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 82  VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSS 141
           VNSLAYEA+ R++DPVYGCV  ISILQR + +LQ++L     +L +Y  +     + S+S
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASAS 154

Query: 142 S 143
           +
Sbjct: 155 T 155

[Close]

BLAST of Clc10G13180 vs. ExPASy Swiss-Prot
Match: Q8LQH4 (LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6 PE=2 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 1.5e-39
Identity = 76/121 (62.81%), Postives = 97/121 (80.17%), Query Frame = 0


Query: 22  SNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDA 81
           + SPCAACKFLRRKC PDCVFAPYFPP+ PQKF +VH++FGASNV+KLLNE+ P+QREDA
Sbjct: 35  TGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPYQREDA 94

Query: 82  VNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTPSPSSS 141
           VNSLAYEA+ R++DPVYGCV  ISILQR + +LQ++L     +L +Y  +     + S+S
Sbjct: 95  VNSLAYEADMRLRDPVYGCVAIISILQRNLRQLQQDLARAKFELSKYQQAAAAAAAASAS 154

Query: 142 S 143
           +
Sbjct: 155 T 155

[Close]

BLAST of Clc10G13180 vs. ExPASy TrEMBL
Match: A0A0A0LI15 (LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV=1)

HSP 1 Score: 366.7 bits (940), Expect = 5.8e-98
Identity = 184/189 (97.35%), Postives = 185/189 (97.88%), Query Frame = 0


Query: 1   MLKQQLTERR---KNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 60
           MLKQQLTERR   KNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV
Sbjct: 12  MLKQQLTERRERGKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANV 71

Query: 61  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 120
           HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE
Sbjct: 72  HKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKE 131

Query: 121 LDATNADLIRYACSEIPTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNN 180
           LDATNADLIRYACSEIP PSPSSSSQYARRSSSTSHEGSSSTSSYGHYY+GLYFSPWSNN
Sbjct: 132 LDATNADLIRYACSEIPAPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNN 191

Query: 181 NNGPCGDGH 187
           NNGPCGDGH
Sbjct: 192 NNGPCGDGH 200

[Close]

BLAST of Clc10G13180 vs. ExPASy TrEMBL
Match: A0A6J1DD95 (LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC111019975 PE=3 SV=1)

HSP 1 Score: 350.5 bits (898), Expect = 4.3e-93
Identity = 179/188 (95.21%), Postives = 184/188 (97.87%), Query Frame = 0


Query: 1   MLKQQLTERRKNYWKMSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI 60
           MLK QLTERRKNYWKM+SSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI
Sbjct: 1   MLK-QLTERRKNYWKMASSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKI 60

Query: 61  FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA 120
           FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA
Sbjct: 61  FGASNVSKLLNEVQPHQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDA 120

Query: 121 TNADLIRYACSEI--PTPSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNN 180
           TNA+LIRYAC+EI  P+PSPSSSSQYARRSSST+HEGSSSTSSYGHYYSGLYFSPWS NN
Sbjct: 121 TNANLIRYACNEIPAPSPSPSSSSQYARRSSSTNHEGSSSTSSYGHYYSGLYFSPWS-NN 180

Query: 181 NGPCGDGH 187
           NGPCGDGH
Sbjct: 181 NGPCGDGH 186

[Close]

BLAST of Clc10G13180 vs. ExPASy TrEMBL
Match: A0A5D3BPW0 (LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00030 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 16  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 76  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPT 135
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 136 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH 187
           PSPSSSSQYARRSSSTSHEGSSSTSSYGHYY+GLYFSPWSNNNNGPCGDGH
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGH 171

[Close]

BLAST of Clc10G13180 vs. ExPASy TrEMBL
Match: A0A1S3B938 (LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE=3 SV=1)

HSP 1 Score: 340.9 bits (873), Expect = 3.4e-90
Identity = 168/171 (98.25%), Postives = 170/171 (99.42%), Query Frame = 0


Query: 16  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 76  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPT 135
           HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSE+P 
Sbjct: 61  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEMPA 120

Query: 136 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH 187
           PSPSSSSQYARRSSSTSHEGSSSTSSYGHYY+GLYFSPWSNNNNGPCGDGH
Sbjct: 121 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYTGLYFSPWSNNNNGPCGDGH 171

[Close]

BLAST of Clc10G13180 vs. ExPASy TrEMBL
Match: A0A6J1FAW3 (LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442374 PE=3 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 1.1e-85
Identity = 161/171 (94.15%), Postives = 167/171 (97.66%), Query Frame = 0


Query: 16  MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 75
           MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP
Sbjct: 1   MSSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQP 60

Query: 76  HQREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPT 135
           HQR+DAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNA+LIRYAC+EIP 
Sbjct: 61  HQRDDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNANLIRYACTEIPA 120

Query: 136 PSPSSSSQYARRSSSTSHEGSSSTSSYGHYYSGLYFSPWSNNNNGPCGDGH 187
           PSPSSSSQYARRSSSTSH+GSSSTSSYGHYYS  YFSPWSN++NG CGDGH
Sbjct: 121 PSPSSSSQYARRSSSTSHDGSSSTSSYGHYYSNPYFSPWSNSHNGSCGDGH 171

[Close]

BLAST of Clc10G13180 vs. TAIR 10
Match: AT3G27650.1 (LOB domain-containing protein 25 )

HSP 1 Score: 204.1 bits (518), Expect = 9.5e-53
Identity = 94/111 (84.68%), Postives = 105/111 (94.59%), Query Frame = 0


Query: 19  STYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQR 78
           S Y+NSPCAACKFLRRKC  DCVFAPYFPPEEP KFANVH+IFGASNVSK+L+EV PHQR
Sbjct: 33  SNYTNSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQR 92

Query: 79  EDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYA 130
           EDAVNSLAYEAEAR+KDPVYGCVGAIS+LQRQV++LQ+EL+ TNADL+RYA
Sbjct: 93  EDAVNSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLMRYA 143

[Close]

BLAST of Clc10G13180 vs. TAIR 10
Match: AT5G63090.2 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-51
Identity = 96/124 (77.42%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 17  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 76
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTP 136
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NADL  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 SPSS 141
           +P +
Sbjct: 123 APGN 126

[Close]

BLAST of Clc10G13180 vs. TAIR 10
Match: AT5G63090.3 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-51
Identity = 96/124 (77.42%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 17  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 76
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTP 136
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NADL  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 SPSS 141
           +P +
Sbjct: 123 APGN 126

[Close]

BLAST of Clc10G13180 vs. TAIR 10
Match: AT5G63090.1 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-51
Identity = 96/124 (77.42%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 17  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 76
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTP 136
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NADL  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 SPSS 141
           +P +
Sbjct: 123 APGN 126

[Close]

BLAST of Clc10G13180 vs. TAIR 10
Match: AT5G63090.4 (Lateral organ boundaries (LOB) domain family protein )

HSP 1 Score: 199.5 bits (506), Expect = 2.3e-51
Identity = 96/124 (77.42%), Postives = 105/124 (84.68%), Query Frame = 0


Query: 17  SSSTYSNSPCAACKFLRRKCLPDCVFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPH 76
           SSS   NSPCAACKFLRRKC+P C+FAPYFPPEEP KFANVHKIFGASNV+KLLNE+ PH
Sbjct: 3   SSSNSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPH 62

Query: 77  QREDAVNSLAYEAEARMKDPVYGCVGAISILQRQVIKLQKELDATNADLIRYACSEIPTP 136
           QREDAVNSLAYEAEAR++DPVYGCVGAIS LQRQV +LQKELDA NADL  Y  S     
Sbjct: 63  QREDAVNSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAG 122

Query: 137 SPSS 141
           +P +
Sbjct: 123 APGN 126

The following BLAST results are available for this feature:

BLAST of Clc10G13180 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905774.1	1.4e-98	98.39	LOB domain-containing protein 25-like [Benincasa hispida]	[more]
XP_004141196.1	1.2e-97	97.35	LOB domain-containing protein 25 isoform X1 [Cucumis sativus]	[more]
XP_022152200.1	8.8e-93	95.21	LOB domain-containing protein 25-like [Momordica charantia]	[more]
XP_011652293.1	3.1e-90	98.83	LOB domain-containing protein 25 isoform X2 [Cucumis sativus] >KAE8651263.1 hypo...	[more]
XP_008443563.1	7.0e-90	98.25	PREDICTED: LOB domain-containing protein 25-like [Cucumis melo] >KAA0053633.1 LO...	[more]

BLAST of Clc10G13180 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8L8Q3	1.3e-51	84.68	LOB domain-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=LBD25 PE=2 S...	[more]
Q9FML4	3.3e-50	77.42	Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana OX=3702 GN=LOB PE=1 SV=...	[more]
O04479	8.7e-43	70.27	Protein ASYMMETRIC LEAVES 2 OS=Arabidopsis thaliana OX=3702 GN=AS2 PE=1 SV=1	[more]
A2WXT0	1.5e-39	62.81	LOB domain-containing protein 6 OS=Oryza sativa subsp. indica OX=39946 GN=LBD6 P...	[more]
Q8LQH4	1.5e-39	62.81	LOB domain-containing protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=LBD6...	[more]

BLAST of Clc10G13180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI15	5.8e-98	97.35	LOB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G839790 PE=3 SV...	[more]
A0A6J1DD95	4.3e-93	95.21	LOB domain-containing protein 25-like OS=Momordica charantia OX=3673 GN=LOC11101...	[more]
A0A5D3BPW0	3.4e-90	98.25	LOB domain-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A1S3B938	3.4e-90	98.25	LOB domain-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103487119 PE...	[more]
A0A6J1FAW3	1.1e-85	94.15	LOB domain-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442...	[more]

BLAST of Clc10G13180 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27650.1	9.5e-53	84.68	LOB domain-containing protein 25	[more]
AT5G63090.2	2.3e-51	77.42	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.3	2.3e-51	77.42	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.1	2.3e-51	77.42	Lateral organ boundaries (LOB) domain family protein	[more]
AT5G63090.4	2.3e-51	77.42	Lateral organ boundaries (LOB) domain family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 104..124
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 134..160
None	No IPR available	PANTHER	PTHR31301:SF12	LOB DOMAIN-CONTAINING PROTEIN 25	coord: 16..178
None	No IPR available	PANTHER	PTHR31301	LOB DOMAIN-CONTAINING PROTEIN 4-RELATED	coord: 16..178
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	LOB	coord: 25..121 e-value: 2.7E-42 score: 143.3
IPR004883	Lateral organ boundaries, LOB	PROSITE	PS50891	LOB	coord: 24..125 score: 27.625731

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G13180.1	Clc10G13180.1	mRNA