Clc10G08570 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G08570
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase Ty1/copia-type domain-containing protein
Location	ClcChr10: 18920657 .. 18921115 (+)
RNA-Seq Expression	Clc10G08570
Synteny	Clc10G08570

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGTTCGTTCACTAGATGTGAAGAAAGATATATTTCGCCCTCGAGATAATAATGAAGAACTTCTTAGTCCTGAAATATCATATCTTAGTGCAATTGATGCACTTATGTATCTTGCTAATAATACAAGACCAGATATTGCATTTTTAGTAAATTTATTAGCTAGATATAGTTCTTCTCTAACAAAAAGACATTGGAATATAATTAAGCATATACTCTGTTATCTCCGAGGATCGATCAATGTGGGTTTGTTTTATTCAAATAAATCAAATTTTGACTTAGTTGGTTATGCAGATTCTAGATATTTATCTGATCCATACAAAACTAGATCTCAAACAGGTTATCTGTTCACATATGGAGAAACTGCTATATCCTGGCGATCAGTGAAACAAACCATAACAGCGACTTCCTCAAATCATGCTGAAATTCTTGCAATCCATGAAACTAGTAGAGAATGA

mRNA sequence

ATGGAAGTTCGTTCACTAGATGTGAAGAAAGATATATTTCGCCCTCGAGATAATAATGAAGAACTTCTTAGTCCTGAAATATCATATCTTAGTGCAATTGATGCACTTATGTATCTTGCTAATAATACAAGACCAGATATTGCATTTTTAGTAAATTTATTAGCTAGATATAGTTCTTCTCTAACAAAAAGACATTGGAATATAATTAAGCATATACTCTGTTATCTCCGAGGATCGATCAATGTGGGTTTGTTTTATTCAAATAAATCAAATTTTGACTTAGTTGGTTATGCAGATTCTAGATATTTATCTGATCCATACAAAACTAGATCTCAAACAGGTTATCTGTTCACATATGGAGAAACTGCTATATCCTGGCGATCAGTGAAACAAACCATAACAGCGACTTCCTCAAATCATGCTGAAATTCTTGCAATCCATGAAACTAGTAGAGAATGA

Coding sequence (CDS)

ATGGAAGTTCGTTCACTAGATGTGAAGAAAGATATATTTCGCCCTCGAGATAATAATGAAGAACTTCTTAGTCCTGAAATATCATATCTTAGTGCAATTGATGCACTTATGTATCTTGCTAATAATACAAGACCAGATATTGCATTTTTAGTAAATTTATTAGCTAGATATAGTTCTTCTCTAACAAAAAGACATTGGAATATAATTAAGCATATACTCTGTTATCTCCGAGGATCGATCAATGTGGGTTTGTTTTATTCAAATAAATCAAATTTTGACTTAGTTGGTTATGCAGATTCTAGATATTTATCTGATCCATACAAAACTAGATCTCAAACAGGTTATCTGTTCACATATGGAGAAACTGCTATATCCTGGCGATCAGTGAAACAAACCATAACAGCGACTTCCTCAAATCATGCTGAAATTCTTGCAATCCATGAAACTAGTAGAGAATGA

Protein sequence

MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHETSRE

Homology

[Close]

BLAST of Clc10G08570 vs. NCBI nr
Match: KAA0038947.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa] >TYK11197.1 Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 253.1 bits (645), Expect = 1.6e-63
Identity = 126/152 (82.89%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
           M VRSLDVKKDIFRPR++NEELL PE+ YL+AI ALMYLANNTRPDI+F VNLLARYSSS
Sbjct: 11  MVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARYSSS 70

Query: 61  LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
            TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+ YLSDP K RSQTGYLFT G
Sbjct: 71  PTKRHWNEVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPRKARSQTGYLFTCG 130

Query: 121 ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
            TAISWRSVKQT+TATSSNHAEILAIHE SRE
Sbjct: 131 GTAISWRSVKQTMTATSSNHAEILAIHEASRE 162

[Close]

BLAST of Clc10G08570 vs. NCBI nr
Match: TYK21506.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa])

HSP 1 Score: 248.1 bits (632), Expect = 5.0e-62
Identity = 125/152 (82.24%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
           M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALMYLANNTRPDIAF VNLLARYS S
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 61  LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
            TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+ +LSDP+K RSQTGYLFT  
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 121 ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
            TAISWRSVKQT+TATSSNHAEILAIHE SRE
Sbjct: 121 GTAISWRSVKQTMTATSSNHAEILAIHEASRE 152

[Close]

BLAST of Clc10G08570 vs. NCBI nr
Match: KAA0067250.1 (Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa])

HSP 1 Score: 247.3 bits (630), Expect = 8.6e-62
Identity = 125/152 (82.24%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
           M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALM LANNTRPDIAF VNLLARYSSS
Sbjct: 11  MVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFSVNLLARYSSS 70

Query: 61  LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
            TKRHWN +KH+L YLRG+I++ LFYSNKSNFDLVGYAD+ YLSDP K RSQ GYLFT+G
Sbjct: 71  PTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWG 130

Query: 121 ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
            TAISWRSVKQT+TATSSNHAEILAIHE SRE
Sbjct: 131 GTAISWRSVKQTMTATSSNHAEILAIHEVSRE 162

[Close]

BLAST of Clc10G08570 vs. NCBI nr
Match: AQY61295.1 (Pol [Coffea arabica])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 114/152 (75.00%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1    MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
            M VRSLD  KD FRPR+ NEE+L PE+ YLSAI ALMYLAN TRPDI+F VNLLAR+SSS
Sbjct: 901  MVVRSLDPNKDPFRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSS 960

Query: 61   LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
             T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+ YLSDP+K RSQTGYLFTYG
Sbjct: 961  PTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYG 1020

Query: 121  ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
             TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Sbjct: 1021 GTAISWRSTKQSLAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Clc10G08570 vs. NCBI nr
Match: AQY61300.1 (Pol [Coffea eugenioides])

HSP 1 Score: 227.3 bits (578), Expect = 9.2e-56
Identity = 113/152 (74.34%), Postives = 129/152 (84.87%), Query Frame = 0


Query: 1    MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
            M VRSLD  KD FRPR+ NEE+L PE+ YLSAI  LMYLAN TRPDI+F VNLLAR+SSS
Sbjct: 901  MVVRSLDPNKDPFRPREENEEILGPEVPYLSAIGVLMYLANCTRPDISFAVNLLARFSSS 960

Query: 61   LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
             T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+ YLSDP+K RSQTGYLFTYG
Sbjct: 961  PTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYG 1020

Query: 121  ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
             TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Sbjct: 1021 GTAISWRSTKQSLAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Clc10G08570 vs. ExPASy Swiss-Prot
Match: P0CV72 (Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 PE=2 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 5.5e-19
Identity = 49/126 (38.89%), Postives = 73/126 (57.94%), Query Frame = 0


Query: 27  ISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFY 86
           + YLSA+ A+MYL   TRPD+A  V +L++++S     HW  +K +L YL+ +   GL +
Sbjct: 4   VPYLSAVGAIMYLMVVTRPDLAAAVGVLSQFASDPCPTHWQALKRVLRYLQSTQTYGLEF 63

Query: 87  SNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAI 146
           +      LVGY+D+ +  D    RS +GYLF      +SWRS KQ   A SS   E +A+
Sbjct: 64  TRAGTAKLVGYSDADWAGDVESRRSTSGYLFKLNGGCVSWRSKKQRTVALSSTEDEYMAL 123

Query: 147 HETSRE 153
            E ++E
Sbjct: 124 SEATQE 129

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BLAST of Clc10G08570 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 8.7e-17
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 0


Query: 26   EISYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLF 85
            ++ Y SA+ +LMY    TRPDIA  V +++R+  +  K HW  +K IL YLRG+    L 
Sbjct: 1108 KVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGKEHWEAVKWILRYLRGTTGDCLC 1167

Query: 86   YSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILA 145
            +   S+  L GY D+    D    +S TGYLFT+   AISW+S  Q   A S+  AE +A
Sbjct: 1168 FGG-SDPILKGYTDADMAGDIDNRKSSTGYLFTFSGGAISWQSKLQKCVALSTTEAEYIA 1227

Query: 146  IHETSRE 153
              ET +E
Sbjct: 1228 ATETGKE 1233

[Close]

BLAST of Clc10G08570 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 83.2 bits (204), Expect = 2.8e-15
Identity = 47/125 (37.60%), Postives = 68/125 (54.40%), Query Frame = 0


Query: 31   SAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKS 90
            S I  LMY+   TRPD+   VN+L+RYSS      W  +K +L YL+G+I++ L +    
Sbjct: 1183 SLIGCLMYIMLCTRPDLTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNL 1242

Query: 91   NFD--LVGYADSRYLSDPYKTRSQTGYLF-TYGETAISWRSVKQTITATSSNHAEILAIH 150
             F+  ++GY DS +       +S TGYLF  +    I W + +Q   A SS  AE +A+ 
Sbjct: 1243 AFENKIIGYVDSDWAGSEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALF 1302

Query: 151  ETSRE 153
            E  RE
Sbjct: 1303 EAVRE 1307

[Close]

BLAST of Clc10G08570 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-13
Identity = 45/124 (36.29%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 29   YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSN 88
            Y   + +L YLA  TRPD+++ VN L++Y    T  HWN +K +L YL G+ + G+F   
Sbjct: 1228 YRGIVGSLQYLA-FTRPDLSYAVNRLSQYMHMPTDDHWNALKRVLRYLAGTPDHGIFLKK 1287

Query: 89   KSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHE 148
             +   L  Y+D+ +  D     S  GY+   G   ISW S KQ     SS  AE  ++  
Sbjct: 1288 GNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRSSTEAEYRSVAN 1347

Query: 149  TSRE 153
            TS E
Sbjct: 1348 TSSE 1350

[Close]

BLAST of Clc10G08570 vs. ExPASy Swiss-Prot
Match: P92519 (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.9e-09
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 29  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSN 88
           + S + AL YL   TRPDI++ VN++ +     T   ++++K +L Y++G+I  GL+   
Sbjct: 100 FRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 89  KSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHE 148
            S  ++  + DS +       RS TG+    G   ISW + +Q   + SS   E  A+  
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 149 TSRE 153
           T+ E
Sbjct: 220 TAAE 222

[Close]

BLAST of Clc10G08570 vs. ExPASy TrEMBL
Match: A0A5D3CGU0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold227G00370 PE=4 SV=1)

HSP 1 Score: 253.1 bits (645), Expect = 7.6e-64
Identity = 126/152 (82.89%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 1   MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
           M VRSLDVKKDIFRPR++NEELL PE+ YL+AI ALMYLANNTRPDI+F VNLLARYSSS
Sbjct: 11  MVVRSLDVKKDIFRPREDNEELLGPEVPYLNAIGALMYLANNTRPDISFSVNLLARYSSS 70

Query: 61  LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
            TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+ YLSDP K RSQTGYLFT G
Sbjct: 71  PTKRHWNEVKHVLRYLRGTIDIGLFYSNKSNFDLVGYADAGYLSDPRKARSQTGYLFTCG 130

Query: 121 ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
            TAISWRSVKQT+TATSSNHAEILAIHE SRE
Sbjct: 131 GTAISWRSVKQTMTATSSNHAEILAIHEASRE 162

[Close]

BLAST of Clc10G08570 vs. ExPASy TrEMBL
Match: A0A5D3DD63 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold518G00010 PE=4 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 2.4e-62
Identity = 125/152 (82.24%), Postives = 137/152 (90.13%), Query Frame = 0


Query: 1   MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
           M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALMYLANNTRPDIAF VNLLARYS S
Sbjct: 1   MLVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMYLANNTRPDIAFSVNLLARYSYS 60

Query: 61  LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
            TKRHWN +KH+L YLRG+I++GLFYSNKSNFDLVGYAD+ +LSDP+K RSQTGYLFT  
Sbjct: 61  PTKRHWNGVKHVLRYLRGTIDMGLFYSNKSNFDLVGYADAGHLSDPHKARSQTGYLFTCE 120

Query: 121 ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
            TAISWRSVKQT+TATSSNHAEILAIHE SRE
Sbjct: 121 GTAISWRSVKQTMTATSSNHAEILAIHEASRE 152

[Close]

BLAST of Clc10G08570 vs. ExPASy TrEMBL
Match: A0A5D3CKU4 (Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1)

HSP 1 Score: 247.3 bits (630), Expect = 4.2e-62
Identity = 125/152 (82.24%), Postives = 136/152 (89.47%), Query Frame = 0


Query: 1   MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
           M VRSLDVKKDIFRPR++NEELL PE+ YLSAI ALM LANNTRPDIAF VNLLARYSSS
Sbjct: 11  MVVRSLDVKKDIFRPREDNEELLGPEVPYLSAIGALMCLANNTRPDIAFSVNLLARYSSS 70

Query: 61  LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
            TKRHWN +KH+L YLRG+I++ LFYSNKSNFDLVGYAD+ YLSDP K RSQ GYLFT+G
Sbjct: 71  PTKRHWNGVKHVLRYLRGTIDMSLFYSNKSNFDLVGYADAGYLSDPDKARSQIGYLFTWG 130

Query: 121 ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
            TAISWRSVKQT+TATSSNHAEILAIHE SRE
Sbjct: 131 GTAISWRSVKQTMTATSSNHAEILAIHEVSRE 162

[Close]

BLAST of Clc10G08570 vs. ExPASy TrEMBL
Match: A0A1U9WYE0 (Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 114/152 (75.00%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1    MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
            M VRSLD  KD FRPR+ NEE+L PE+ YLSAI ALMYLAN TRPDI+F VNLLAR+SSS
Sbjct: 901  MVVRSLDPNKDPFRPREENEEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSS 960

Query: 61   LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
             T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+ YLSDP+K RSQTGYLFTYG
Sbjct: 961  PTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYADAGYLSDPHKARSQTGYLFTYG 1020

Query: 121  ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
             TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Sbjct: 1021 GTAISWRSTKQSLAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Clc10G08570 vs. ExPASy TrEMBL
Match: A0A1U9WYD5 (Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.4e-56
Identity = 113/152 (74.34%), Postives = 130/152 (85.53%), Query Frame = 0


Query: 1    MEVRSLDVKKDIFRPRDNNEELLSPEISYLSAIDALMYLANNTRPDIAFLVNLLARYSSS 60
            M VRSLD  KD FRPR+ N+E+L PE+ YLSAI ALMYLAN TRPDI+F VNLLAR+SSS
Sbjct: 901  MVVRSLDPNKDPFRPREENKEILGPEVPYLSAIGALMYLANCTRPDISFAVNLLARFSSS 960

Query: 61   LTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYG 120
             T+RHWN IKHI  YL+G+I++GLFYSNKS  +LVGYAD+ YLSDP+K RSQTGYLFTYG
Sbjct: 961  PTRRHWNGIKHIFRYLQGTIDLGLFYSNKSKPELVGYADTGYLSDPHKARSQTGYLFTYG 1020

Query: 121  ETAISWRSVKQTITATSSNHAEILAIHETSRE 153
             TAISWRS KQ++ ATSSNHAEI+AIHE SRE
Sbjct: 1021 GTAISWRSTKQSLAATSSNHAEIIAIHEASRE 1052

[Close]

BLAST of Clc10G08570 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 75.9 bits (185), Expect = 3.2e-14
Identity = 44/119 (36.97%), Postives = 67/119 (56.30%), Query Frame = 0


Query: 28  SYLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYS 87
           +Y   I  LMYL   TR DI+F VN L+++S +    H   +  IL Y++G++  GLFYS
Sbjct: 377 AYRRLIGRLMYL-QITRLDISFAVNKLSQFSEAPRLAHQQAVMKILHYIKGTVGQGLFYS 436

Query: 88  NKSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAI 147
           +++   L  ++D+ + S     RS  GY    G + ISW+S KQ + + SS  AE  A+
Sbjct: 437 SQAEMQLQVFSDASFQSCKDTRRSTNGYCMFLGTSLISWKSKKQQVVSKSSAEAEYRAL 494

[Close]

BLAST of Clc10G08570 vs. TAIR 10
Match: ATMG00810.1 (DNA/RNA polymerases superfamily protein )

HSP 1 Score: 62.8 bits (151), Expect = 2.8e-10
Identity = 38/124 (30.65%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 29  YLSAIDALMYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSN 88
           + S + AL YL   TRPDI++ VN++ +     T   ++++K +L Y++G+I  GL+   
Sbjct: 100 FRSIVGALQYL-TLTRPDISYAVNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHK 159

Query: 89  KSNFDLVGYADSRYLSDPYKTRSQTGYLFTYGETAISWRSVKQTITATSSNHAEILAIHE 148
            S  ++  + DS +       RS TG+    G   ISW + +Q   + SS   E  A+  
Sbjct: 160 NSKLNVQAFCDSDWAGCTSTRRSTTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALAL 219

Query: 149 TSRE 153
           T+ E
Sbjct: 220 TAAE 222

[Close]

BLAST of Clc10G08570 vs. TAIR 10
Match: ATMG00240.1 (Gag-Pol-related retrotransposon family protein )

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-09
Identity = 32/79 (40.51%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 37  MYLANNTRPDIAFLVNLLARYSSSLTKRHWNIIKHILCYLRGSINVGLFYSNKSNFDLVG 96
           MYL   TRPD+ F VN L+++SS+        +  +L Y++G++  GLFYS  S+  L  
Sbjct: 1   MYL-TITRPDLTFAVNRLSQFSSASRTAQMQAVYKVLHYVKGTVGQGLFYSATSDLQLKA 60

Query: 97  YADSRYLSDPYKTRSQTGY 116
           +ADS + S P   RS TG+
Sbjct: 61  FADSDWASCPDTRRSVTGF 78

The following BLAST results are available for this feature:

BLAST of Clc10G08570 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0038947.1	1.6e-63	82.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
TYK21506.1	5.0e-62	82.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. m...	[more]
KAA0067250.1	8.6e-62	82.24	Pol [Cucumis melo var. makuwa] >TYK10859.1 Pol [Cucumis melo var. makuwa]	[more]
AQY61295.1	3.2e-56	75.00	Pol [Coffea arabica]	[more]
AQY61300.1	9.2e-56	74.34	Pol [Coffea eugenioides]	[more]

BLAST of Clc10G08570 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P0CV72	5.5e-19	38.89	Secreted RxLR effector protein 161 OS=Plasmopara viticola OX=143451 GN=RXLR161 P...	[more]
P10978	8.7e-17	40.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	2.8e-15	37.60	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	1.5e-13	36.29	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P92519	3.9e-09	30.65	Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana OX=3702 ...	[more]

BLAST of Clc10G08570 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CGU0	7.6e-64	82.89	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3DD63	2.4e-62	82.24	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cucumis melo var....	[more]
A0A5D3CKU4	4.2e-62	82.24	Pol OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold231G00300 PE=4 SV=1	[more]
A0A1U9WYE0	1.5e-56	75.00	Pol OS=Coffea arabica OX=13443 GN=Pol PE=4 SV=1	[more]
A0A1U9WYD5	4.4e-56	74.34	Pol OS=Coffea canephora OX=49390 GN=Pol PE=4 SV=1	[more]

BLAST of Clc10G08570 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	3.2e-14	36.97	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00810.1	2.8e-10	30.65	DNA/RNA polymerases superfamily protein	[more]
ATMG00240.1	3.1e-09	40.51	Gag-Pol-related retrotransposon family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 26..119
None	No IPR available	PANTHER	PTHR11439:SF308	SUBFAMILY NOT NAMED	coord: 26..119
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 95..152 e-value: 5.43796E-19 score: 75.9677

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G08570.1	Clc10G08570.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding