Clc10G02700 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAGCGTGAAGGAACAAGCTTCACAAGGGAGCGCTTTAATAGTTGACGAAGAAGTGCAGCAGAAGATGGCTGCTAGTGAGGCAGGTAATGTTATGAGGAATAGTGCGAGTGTTAAAAATATGTTGTTTGCTATACACCATCTTGATGTGCCTTTTATGTTATTATAGTTTGTTTGGAAACTTATTACGTTTTCTTTTTTTATACAGTAAAGAAAAAGAAGAAGAAGAAAGTTCGCCTGCCTGCAAATGGTATTCAAATCTGTTCATTATGGTTTTACTTTAATTTTTCTACAGTTTTGGCATTAATTTTTTTTATTATTAAGAATTTGGTTGAGTTTGCCCTAATGCCCGGGATATTATTTTTGGATGTTTCTCAGACTTTCAATGGAAAACTTCTCAAGATCTTGCAACGGAGAACTATATGATGCCCATGGGTGGCCCGGCTCCATATAATCCATATTGGTCAGGCATGCAACCTGGTTTTGATGGTTACATGTCCTCATATGCTGCTGCTCCAATGCCATATATGGGTGGTTATGGGCTAGGTCCCTTGGACATGCCTTTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAGTTACATGTTTCCTGTTGCTCCTCCTCAGAGGTATGTCTTCATAGTTCATATATGAAATGCAATAGGTTTTTAACATTAGTCTCTTTCATTCTTTCATCATTGTTTCTTCTTCTTTAAAAGTAGGTTTATTCAAATGAAACTTAGTGAATTGTATTACGAACTAAACGAACTAAACAAGTCTACTCTACATATTAGCCCGTCTAGAAGTGAATCCTGTGGCCTTTTTTGTTTATCGTACCCCTCGGTTATAATGTGTACTTTTGTTTCCATTTGTTGTGGCCTTAGCTGGATGTACAATGCCTATATTCATTGCTAACGAGATCTACTTTGTGTTTTTCTGTTCATGCGCCTGATTGCATGTTATCACATTGCCTGTTCCCCATTTTATTTACTTTGTGTTTTGATGCTACTTTATCAAACAAAAGGTGCTGAGATATTGCACTATTTTGTACCATTTCTGAAGAGATTTCAATATTGTACATACTTAGGGATCTTGCGGACTTTGGCATGGGTATGAATATTGCACCTCCCACAATGAGCCGTGAGGAATTTGAGGCTCGGAAAGCTGGATTGGGTTTGAGGAGGAAGCATGAAAATGAAAGACGGGTTGAAAGGTATATGAAGCTTTCTAATGCCTCCTTTTTTTGTTTTCTGAGAGGAAGGTGTTTGTGGCCATGTGTGTAGTGATGCTTGGGCTCTTCTTGGGTTCAATGTGTCTCTGTGAGTTTCAGTGGCTAAGCTGTCGCTGTAACTATTACTTAGGTCTTATTTTGTTTGATTGGAGGCCTTTTTTAGGCTGCCTCTTCTGTTATAGGCTCATTTCTGTATGCCCTTTATGTGGAAATTTGGTTATTCATAAAAAGAAAAATTTTAGTTTCCTATGATTGATTTCAAATGTATATATAGGTTCTTTAATTGTTGAAGCTGTTACGGTCCATTGTCAATCAAATACCTTCAGGGATGAAATTTATTCTCAACGTTCTTTGCGTTTTATATTCCAATATGTTGGGGTTCAAGTGTTTAGTCACATTTGACACTCTAGAATATGAACTCTTCTTTCTTCTTCTTCTCTCTCGTCCTTTTTTCTTCCTGAAACAAGGTAATACTGATACAAACTATTTATGAAGTGGTGTGGTGCAATGGGAAGCTTTACGTAGAGATTGTGACCTAAGAAGCAAAATGAAATTGGGAAGATGTAATCTCTAGTTGTCTTATTAAACCAAATGAAAATCTTTAATTAGCTTCTTTCGCTGATCAGTGGGCTGACAAAAATCCTTCGTTGCAAACAATCAGATAATCAATTGATTCCGAGCAAAAATCTTCATTTTTCGAAGACGCTTCCCCATAACAAAAACCAATGCACCTTTCTGTCTGACTCTTTTTGCCCTCTTTTTTTTTGGGGGGGGGGGGGTGGGGGGTGGGGTTGGATTTAGACTTCAGCCTTTTTGTCCTATAGTATTGTCCATATGCAATTAATCTTGAAATTGTTTATATTATGATGTATGAACTAAATTTGTTCTGAAACATCTTGCAGTAGGGAACGGGAACCACCAAAAGATCGGGAATATGGAAGGGGGAAGTGTGCAGCAGTGGTGATGGCCCTTCAATGA atgagcgtgaaggaacaagcttcacaagggagcgctttaatagttgacgaagaagtgcagcagaagatggctgctagtgaggcagtaaagaaaaagaagaagaagaaagttcgcctgcctgcaaatgactttcaatggaaaacttctcaagatcttgcaacggagaactatatgatgcccatgggtggcccggctccatataatccatattggtcaggcatgcaacctggttttgatggttacatgtcctcatatgctgctgctccaatgccatatatgggtggttatgggctaggtcccttggacatgccttttggacctgtcatgcctcaggatccatttgctatgcaaagttacatgtttcctgttgctcctcctcagagggatcttgcggactttggcatgggtatgaatattgcacctcccacaatgagccgtgaggaatttgaggctcggaaagctggattgggtttgaggaggaagcatgaaaatgaaagacgggttgaaagtagggaacgggaaccaccaaaagatcgggaatatggaagggggaagtgtgcagcagtggtgatggcccttcaatga ATGAGCGTGAAGGAACAAGCTTCACAAGGGAGCGCTTTAATAGTTGACGAAGAAGTGCAGCAGAAGATGGCTGCTAGTGAGGCAGTAAAGAAAAAGAAGAAGAAGAAAGTTCGCCTGCCTGCAAATGACTTTCAATGGAAAACTTCTCAAGATCTTGCAACGGAGAACTATATGATGCCCATGGGTGGCCCGGCTCCATATAATCCATATTGGTCAGGCATGCAACCTGGTTTTGATGGTTACATGTCCTCATATGCTGCTGCTCCAATGCCATATATGGGTGGTTATGGGCTAGGTCCCTTGGACATGCCTTTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAGTTACATGTTTCCTGTTGCTCCTCCTCAGAGGGATCTTGCGGACTTTGGCATGGGTATGAATATTGCACCTCCCACAATGAGCCGTGAGGAATTTGAGGCTCGGAAAGCTGGATTGGGTTTGAGGAGGAAGCATGAAAATGAAAGACGGGTTGAAAGTAGGGAACGGGAACCACCAAAAGATCGGGAATATGGAAGGGGGAAGTGTGCAGCAGTGGTGATGGCCCTTCAATGA MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMPMGGPAPYNPYWSGMQPGFDGYMSSYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQSYMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKDREYGRGKCAAVVMALQ Homology
BLAST of Clc10G02700 vs. NCBI nr
Match: XP_008448826.1 (PREDICTED: E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucumis melo]) HSP 1 Score: 338.6 bits (867), Expect = 3.6e-89 Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0
BLAST of Clc10G02700 vs. NCBI nr
Match: TYK12034.1 (E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 338.6 bits (867), Expect = 3.6e-89 Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0
BLAST of Clc10G02700 vs. NCBI nr
Match: XP_038903839.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Benincasa hispida]) HSP 1 Score: 335.9 bits (860), Expect = 2.3e-88 Identity = 169/184 (91.85%), Postives = 175/184 (95.11%), Query Frame = 0
BLAST of Clc10G02700 vs. NCBI nr
Match: XP_031738179.1 (E3 ubiquitin ligase PQT3-like isoform X3 [Cucumis sativus]) HSP 1 Score: 335.5 bits (859), Expect = 3.1e-88 Identity = 173/188 (92.02%), Postives = 178/188 (94.68%), Query Frame = 0
BLAST of Clc10G02700 vs. NCBI nr
Match: XP_004147218.2 (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 isoform X1 [Cucumis sativus] >KGN55851.1 hypothetical protein Csa_011386 [Cucumis sativus]) HSP 1 Score: 335.5 bits (859), Expect = 3.1e-88 Identity = 173/188 (92.02%), Postives = 178/188 (94.68%), Query Frame = 0
BLAST of Clc10G02700 vs. ExPASy Swiss-Prot
Match: B9DFV2 (E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23 Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0
BLAST of Clc10G02700 vs. ExPASy Swiss-Prot
Match: F4JP52 (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3 PE=1 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 6.5e-17 Identity = 68/165 (41.21%), Postives = 89/165 (53.94%), Query Frame = 0
BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A5D3CLI7 (E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00460 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89 Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0
BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A1S3BK09 (E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1) HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89 Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0
BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A0A0L6U2 (DWNN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1) HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88 Identity = 173/188 (92.02%), Postives = 178/188 (94.68%), Query Frame = 0
BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A1S3BKM0 (E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1) HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87 Identity = 172/190 (90.53%), Postives = 179/190 (94.21%), Query Frame = 0
BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A6J1KZE7 (E3 ubiquitin ligase PQT3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111500231 PE=4 SV=1) HSP 1 Score: 324.7 bits (831), Expect = 2.6e-85 Identity = 167/183 (91.26%), Postives = 171/183 (93.44%), Query Frame = 0
BLAST of Clc10G02700 vs. TAIR 10
Match: AT5G47430.1 (DWNN domain, a CCHC-type zinc finger ) HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24 Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0
BLAST of Clc10G02700 vs. TAIR 10
Match: AT5G47430.2 (DWNN domain, a CCHC-type zinc finger ) HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24 Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0
BLAST of Clc10G02700 vs. TAIR 10
Match: AT5G47430.3 (DWNN domain, a CCHC-type zinc finger ) HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24 Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0
BLAST of Clc10G02700 vs. TAIR 10
Match: AT4G17410.3 (DWNN domain, a CCHC-type zinc finger ) HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19 Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 0
BLAST of Clc10G02700 vs. TAIR 10
Match: AT4G17410.2 (DWNN domain, a CCHC-type zinc finger ) HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19 Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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