Clc10G02700 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G02700
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	E3 ubiquitin ligase PQT3-like isoform X1
Location	ClcChr10: 2766568 .. 2768780 (-)
RNA-Seq Expression	Clc10G02700
Synteny	Clc10G02700

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCGTGAAGGAACAAGCTTCACAAGGGAGCGCTTTAATAGTTGACGAAGAAGTGCAGCAGAAGATGGCTGCTAGTGAGGCAGGTAATGTTATGAGGAATAGTGCGAGTGTTAAAAATATGTTGTTTGCTATACACCATCTTGATGTGCCTTTTATGTTATTATAGTTTGTTTGGAAACTTATTACGTTTTCTTTTTTTATACAGTAAAGAAAAAGAAGAAGAAGAAAGTTCGCCTGCCTGCAAATGGTATTCAAATCTGTTCATTATGGTTTTACTTTAATTTTTCTACAGTTTTGGCATTAATTTTTTTTATTATTAAGAATTTGGTTGAGTTTGCCCTAATGCCCGGGATATTATTTTTGGATGTTTCTCAGACTTTCAATGGAAAACTTCTCAAGATCTTGCAACGGAGAACTATATGATGCCCATGGGTGGCCCGGCTCCATATAATCCATATTGGTCAGGCATGCAACCTGGTTTTGATGGTTACATGTCCTCATATGCTGCTGCTCCAATGCCATATATGGGTGGTTATGGGCTAGGTCCCTTGGACATGCCTTTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAGTTACATGTTTCCTGTTGCTCCTCCTCAGAGGTATGTCTTCATAGTTCATATATGAAATGCAATAGGTTTTTAACATTAGTCTCTTTCATTCTTTCATCATTGTTTCTTCTTCTTTAAAAGTAGGTTTATTCAAATGAAACTTAGTGAATTGTATTACGAACTAAACGAACTAAACAAGTCTACTCTACATATTAGCCCGTCTAGAAGTGAATCCTGTGGCCTTTTTTGTTTATCGTACCCCTCGGTTATAATGTGTACTTTTGTTTCCATTTGTTGTGGCCTTAGCTGGATGTACAATGCCTATATTCATTGCTAACGAGATCTACTTTGTGTTTTTCTGTTCATGCGCCTGATTGCATGTTATCACATTGCCTGTTCCCCATTTTATTTACTTTGTGTTTTGATGCTACTTTATCAAACAAAAGGTGCTGAGATATTGCACTATTTTGTACCATTTCTGAAGAGATTTCAATATTGTACATACTTAGGGATCTTGCGGACTTTGGCATGGGTATGAATATTGCACCTCCCACAATGAGCCGTGAGGAATTTGAGGCTCGGAAAGCTGGATTGGGTTTGAGGAGGAAGCATGAAAATGAAAGACGGGTTGAAAGGTATATGAAGCTTTCTAATGCCTCCTTTTTTTGTTTTCTGAGAGGAAGGTGTTTGTGGCCATGTGTGTAGTGATGCTTGGGCTCTTCTTGGGTTCAATGTGTCTCTGTGAGTTTCAGTGGCTAAGCTGTCGCTGTAACTATTACTTAGGTCTTATTTTGTTTGATTGGAGGCCTTTTTTAGGCTGCCTCTTCTGTTATAGGCTCATTTCTGTATGCCCTTTATGTGGAAATTTGGTTATTCATAAAAAGAAAAATTTTAGTTTCCTATGATTGATTTCAAATGTATATATAGGTTCTTTAATTGTTGAAGCTGTTACGGTCCATTGTCAATCAAATACCTTCAGGGATGAAATTTATTCTCAACGTTCTTTGCGTTTTATATTCCAATATGTTGGGGTTCAAGTGTTTAGTCACATTTGACACTCTAGAATATGAACTCTTCTTTCTTCTTCTTCTCTCTCGTCCTTTTTTCTTCCTGAAACAAGGTAATACTGATACAAACTATTTATGAAGTGGTGTGGTGCAATGGGAAGCTTTACGTAGAGATTGTGACCTAAGAAGCAAAATGAAATTGGGAAGATGTAATCTCTAGTTGTCTTATTAAACCAAATGAAAATCTTTAATTAGCTTCTTTCGCTGATCAGTGGGCTGACAAAAATCCTTCGTTGCAAACAATCAGATAATCAATTGATTCCGAGCAAAAATCTTCATTTTTCGAAGACGCTTCCCCATAACAAAAACCAATGCACCTTTCTGTCTGACTCTTTTTGCCCTCTTTTTTTTTGGGGGGGGGGGGGTGGGGGGTGGGGTTGGATTTAGACTTCAGCCTTTTTGTCCTATAGTATTGTCCATATGCAATTAATCTTGAAATTGTTTATATTATGATGTATGAACTAAATTTGTTCTGAAACATCTTGCAGTAGGGAACGGGAACCACCAAAAGATCGGGAATATGGAAGGGGGAAGTGTGCAGCAGTGGTGATGGCCCTTCAATGA

mRNA sequence

atgagcgtgaaggaacaagcttcacaagggagcgctttaatagttgacgaagaagtgcagcagaagatggctgctagtgaggcagtaaagaaaaagaagaagaagaaagttcgcctgcctgcaaatgactttcaatggaaaacttctcaagatcttgcaacggagaactatatgatgcccatgggtggcccggctccatataatccatattggtcaggcatgcaacctggttttgatggttacatgtcctcatatgctgctgctccaatgccatatatgggtggttatgggctaggtcccttggacatgccttttggacctgtcatgcctcaggatccatttgctatgcaaagttacatgtttcctgttgctcctcctcagagggatcttgcggactttggcatgggtatgaatattgcacctcccacaatgagccgtgaggaatttgaggctcggaaagctggattgggtttgaggaggaagcatgaaaatgaaagacgggttgaaagtagggaacgggaaccaccaaaagatcgggaatatggaagggggaagtgtgcagcagtggtgatggcccttcaatga

Coding sequence (CDS)

ATGAGCGTGAAGGAACAAGCTTCACAAGGGAGCGCTTTAATAGTTGACGAAGAAGTGCAGCAGAAGATGGCTGCTAGTGAGGCAGTAAAGAAAAAGAAGAAGAAGAAAGTTCGCCTGCCTGCAAATGACTTTCAATGGAAAACTTCTCAAGATCTTGCAACGGAGAACTATATGATGCCCATGGGTGGCCCGGCTCCATATAATCCATATTGGTCAGGCATGCAACCTGGTTTTGATGGTTACATGTCCTCATATGCTGCTGCTCCAATGCCATATATGGGTGGTTATGGGCTAGGTCCCTTGGACATGCCTTTTGGACCTGTCATGCCTCAGGATCCATTTGCTATGCAAAGTTACATGTTTCCTGTTGCTCCTCCTCAGAGGGATCTTGCGGACTTTGGCATGGGTATGAATATTGCACCTCCCACAATGAGCCGTGAGGAATTTGAGGCTCGGAAAGCTGGATTGGGTTTGAGGAGGAAGCATGAAAATGAAAGACGGGTTGAAAGTAGGGAACGGGAACCACCAAAAGATCGGGAATATGGAAGGGGGAAGTGTGCAGCAGTGGTGATGGCCCTTCAATGA

Protein sequence

MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMPMGGPAPYNPYWSGMQPGFDGYMSSYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQSYMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKDREYGRGKCAAVVMALQ

Homology

[Close]

BLAST of Clc10G02700 vs. NCBI nr
Match: XP_008448826.1 (PREDICTED: E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucumis melo])

HSP 1 Score: 338.6 bits (867), Expect = 3.6e-89
Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 446 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 505

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 506 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 565

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAPP MSREEFEARKAGL +RRKHENERRVESREREPPKD
Sbjct: 566 YMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNMRRKHENERRVESREREPPKD 625

Query: 181 REYGRGKCAA 189
           RE+GR  C +
Sbjct: 626 REFGREVCTS 634

[Close]

BLAST of Clc10G02700 vs. NCBI nr
Match: TYK12034.1 (E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 338.6 bits (867), Expect = 3.6e-89
Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 446 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 505

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 506 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 565

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAPP MSREEFEARKAGL +RRKHENERRVESREREPPKD
Sbjct: 566 YMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNMRRKHENERRVESREREPPKD 625

Query: 181 REYGRGKCAA 189
           RE+GR  C +
Sbjct: 626 REFGREVCTS 634

[Close]

BLAST of Clc10G02700 vs. NCBI nr
Match: XP_038903839.1 (E3 ubiquitin ligase PQT3-like isoform X1 [Benincasa hispida])

HSP 1 Score: 335.9 bits (860), Expect = 2.3e-88
Identity = 169/184 (91.85%), Postives = 175/184 (95.11%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKM-AASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMM 60
           +SVKEQASQGSALIVDEEVQQKM AASEAVKKKKKKKVR+PANDFQWKTSQDL  ENYMM
Sbjct: 445 ISVKEQASQGSALIVDEEVQQKMAAASEAVKKKKKKKVRMPANDFQWKTSQDLVAENYMM 504

Query: 61  PMGGPAPYNPYWSGMQPGFDGYMSSYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQSY 120
           PMGGP PYNPYWSGMQPGFDGYM SYAAAPMPYMGGYGLGPLDMPFGPV+PQDPFAMQSY
Sbjct: 505 PMGGPTPYNPYWSGMQPGFDGYMPSYAAAPMPYMGGYGLGPLDMPFGPVIPQDPFAMQSY 564

Query: 121 MFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKDR 180
            FPVAPPQRDLADFGMGMNIAPP M+REEFEARKAGL LRRKHENERR+ESREREP KDR
Sbjct: 565 AFPVAPPQRDLADFGMGMNIAPPAMTREEFEARKAGLNLRRKHENERRIESREREPLKDR 624

Query: 181 EYGR 184
           E+GR
Sbjct: 625 EFGR 628

[Close]

BLAST of Clc10G02700 vs. NCBI nr
Match: XP_031738179.1 (E3 ubiquitin ligase PQT3-like isoform X3 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 3.1e-88
Identity = 173/188 (92.02%), Postives = 178/188 (94.68%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 349 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 408

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 409 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 468

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAP  MSREEFEARKAGL LRRKHENERRVESREREPPKD
Sbjct: 469 YMFPVAPPQRDLADFGMGMNIAPHAMSREEFEARKAGLNLRRKHENERRVESREREPPKD 528

Query: 181 REYGRGKC 187
           RE+GR  C
Sbjct: 529 REFGREVC 535

[Close]

BLAST of Clc10G02700 vs. NCBI nr
Match: XP_004147218.2 (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 isoform X1 [Cucumis sativus] >KGN55851.1 hypothetical protein Csa_011386 [Cucumis sativus])

HSP 1 Score: 335.5 bits (859), Expect = 3.1e-88
Identity = 173/188 (92.02%), Postives = 178/188 (94.68%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 446 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 505

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 506 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 565

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAP  MSREEFEARKAGL LRRKHENERRVESREREPPKD
Sbjct: 566 YMFPVAPPQRDLADFGMGMNIAPHAMSREEFEARKAGLNLRRKHENERRVESREREPPKD 625

Query: 181 REYGRGKC 187
           RE+GR  C
Sbjct: 626 REFGREVC 632

[Close]

BLAST of Clc10G02700 vs. ExPASy Swiss-Prot
Match: B9DFV2 (E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-23
Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 6   QASQGSALIVD------------EEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLA 65
           +++QGS ++ +            EE+QQ++AA E   KKKKKK R+P ND QW    DLA
Sbjct: 441 ESTQGSVIVKEATVSKLNTQAPKEEMQQQVAAGEP-GKKKKKKPRVPGNDMQWNPVPDLA 500

Query: 66  TENYMMPMG-GPAPYN-----------------PYWSGMQPGFDGYMSSYAAAPMPYMGG 125
             +YMM MG GP  +N                 P ++G  PGF+G+   +  A  P+M G
Sbjct: 501 GPDYMMQMGPGPQYFNGMQPGFNGVQPGFNGVQPGFNGFHPGFNGFGGPFPGAMPPFM-G 560

Query: 126 YGLGPLDMPFG---PVMPQDPFAMQSYMFP-VAPPQRDLADFGMGMNIAPPTMSREEFEA 170
           YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+ G  MN+    M R+E EA
Sbjct: 561 YGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAEMGNRMNLQRAMMGRDEAEA 620

[Close]

BLAST of Clc10G02700 vs. ExPASy Swiss-Prot
Match: F4JP52 (E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3 PE=1 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 6.5e-17
Identity = 68/165 (41.21%), Postives = 89/165 (53.94%), Query Frame = 0


Query: 17  EEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMPMGGPAPYNPYWSGMQP 76
           EE+ Q++A+ E  K+KKKK            +  DLA  +YMMPM GP P N Y++G QP
Sbjct: 457 EEMPQQVASGEQGKRKKKK---------PRMSGTDLAGPDYMMPM-GPGPGNQYFNGFQP 516

Query: 77  GFDGYMSSYAAAPMPYMGGY-------GLGPLDMP------FGPVMPQDPFAMQSYMFP- 136
           GF+G    +      + G +       G  P  MP      FG V+  DPFA Q + FP 
Sbjct: 517 GFNGVQHGFNGVQPGFNGFHHGFNGFPGPFPGAMPPFVGYGFGGVIHPDPFAAQGFGFPN 576

Query: 137 VAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERR 168
           + PP RDLA+ G  MN+  P M REEFEA+K    ++RK ENE R
Sbjct: 577 IPPPYRDLAEMGNRMNLQHPIMGREEFEAKKT--EMKRKRENEIR 609

[Close]

BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A5D3CLI7 (E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00460 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89
Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 446 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 505

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 506 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 565

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAPP MSREEFEARKAGL +RRKHENERRVESREREPPKD
Sbjct: 566 YMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNMRRKHENERRVESREREPPKD 625

Query: 181 REYGRGKCAA 189
           RE+GR  C +
Sbjct: 626 REFGREVCTS 634

[Close]

BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A1S3BK09 (E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 338.6 bits (867), Expect = 1.7e-89
Identity = 173/190 (91.05%), Postives = 180/190 (94.74%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 446 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 505

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 506 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 565

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAPP MSREEFEARKAGL +RRKHENERRVESREREPPKD
Sbjct: 566 YMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNMRRKHENERRVESREREPPKD 625

Query: 181 REYGRGKCAA 189
           RE+GR  C +
Sbjct: 626 REFGREVCTS 634

[Close]

BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A0A0L6U2 (DWNN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 SV=1)

HSP 1 Score: 335.5 bits (859), Expect = 1.5e-88
Identity = 173/188 (92.02%), Postives = 178/188 (94.68%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 446 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 505

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 506 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 565

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAP  MSREEFEARKAGL LRRKHENERRVESREREPPKD
Sbjct: 566 YMFPVAPPQRDLADFGMGMNIAPHAMSREEFEARKAGLNLRRKHENERRVESREREPPKD 625

Query: 181 REYGRGKC 187
           RE+GR  C
Sbjct: 626 REFGREVC 632

[Close]

BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A1S3BKM0 (E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490875 PE=4 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 1.6e-87
Identity = 172/190 (90.53%), Postives = 179/190 (94.21%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           +SVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVR PANDFQWKTSQDLATENYMMP
Sbjct: 446 ISVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRPPANDFQWKTSQDLATENYMMP 505

Query: 61  MGGPAPYNPYWSGMQPGFDGYMS--SYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQS 120
           MGGPAPYNPYW+GMQ GFDGYM+  SY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+
Sbjct: 506 MGGPAPYNPYWTGMQSGFDGYMNMPSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQN 565

Query: 121 YMFPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKD 180
           YMFPVAPPQRDLADFGMGMNIAPP MSREEFEARKAGL +RRKHENERRVE REREPPKD
Sbjct: 566 YMFPVAPPQRDLADFGMGMNIAPPAMSREEFEARKAGLNMRRKHENERRVE-REREPPKD 625

Query: 181 REYGRGKCAA 189
           RE+GR  C +
Sbjct: 626 REFGREVCTS 633

[Close]

BLAST of Clc10G02700 vs. ExPASy TrEMBL
Match: A0A6J1KZE7 (E3 ubiquitin ligase PQT3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111500231 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 2.6e-85
Identity = 167/183 (91.26%), Postives = 171/183 (93.44%), Query Frame = 0


Query: 1   MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMP 60
           MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKK VR+PAND QWKTSQDLA ENYMMP
Sbjct: 445 MSVKEQASQGSALIVDEEVQQKMAASEAVKKKKKKNVRMPANDVQWKTSQDLAMENYMMP 504

Query: 61  MGGPAPYNPYWSGMQPGFDGYMSSYAAAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQSYM 120
           MGGP PYNPYW G QPGFDGYMSSY AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQ+YM
Sbjct: 505 MGGPTPYNPYWMGAQPGFDGYMSSY-AAPMPYMGGYGLGPLDMPFGPVMPQDPFAMQNYM 564

Query: 121 FPVAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERRVESREREPPKDRE 180
            PVAPPQRDLA+FGMGMNIAPP MSREEFEARKA   LRRKHENERRVESREREPPKDRE
Sbjct: 565 LPVAPPQRDLANFGMGMNIAPPAMSREEFEARKA--SLRRKHENERRVESREREPPKDRE 624

Query: 181 YGR 184
           +GR
Sbjct: 625 FGR 624

[Close]

BLAST of Clc10G02700 vs. TAIR 10
Match: AT5G47430.1 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 6   QASQGSALIVD------------EEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLA 65
           +++QGS ++ +            EE+QQ++AA E   KKKKKK R+P ND QW    DLA
Sbjct: 441 ESTQGSVIVKEATVSKLNTQAPKEEMQQQVAAGEP-GKKKKKKPRVPGNDMQWNPVPDLA 500

Query: 66  TENYMMPMG-GPAPYN-----------------PYWSGMQPGFDGYMSSYAAAPMPYMGG 125
             +YMM MG GP  +N                 P ++G  PGF+G+   +  A  P+M G
Sbjct: 501 GPDYMMQMGPGPQYFNGMQPGFNGVQPGFNGVQPGFNGFHPGFNGFGGPFPGAMPPFM-G 560

Query: 126 YGLGPLDMPFG---PVMPQDPFAMQSYMFP-VAPPQRDLADFGMGMNIAPPTMSREEFEA 170
           YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+ G  MN+    M R+E EA
Sbjct: 561 YGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAEMGNRMNLQRAMMGRDEAEA 620

[Close]

BLAST of Clc10G02700 vs. TAIR 10
Match: AT5G47430.2 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 6   QASQGSALIVD------------EEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLA 65
           +++QGS ++ +            EE+QQ++AA E   KKKKKK R+P ND QW    DLA
Sbjct: 380 ESTQGSVIVKEATVSKLNTQAPKEEMQQQVAAGEP-GKKKKKKPRVPGNDMQWNPVPDLA 439

Query: 66  TENYMMPMG-GPAPYN-----------------PYWSGMQPGFDGYMSSYAAAPMPYMGG 125
             +YMM MG GP  +N                 P ++G  PGF+G+   +  A  P+M G
Sbjct: 440 GPDYMMQMGPGPQYFNGMQPGFNGVQPGFNGVQPGFNGFHPGFNGFGGPFPGAMPPFM-G 499

Query: 126 YGLGPLDMPFG---PVMPQDPFAMQSYMFP-VAPPQRDLADFGMGMNIAPPTMSREEFEA 170
           YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+ G  MN+    M R+E EA
Sbjct: 500 YGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAEMGNRMNLQRAMMGRDEAEA 559

[Close]

BLAST of Clc10G02700 vs. TAIR 10
Match: AT5G47430.3 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 110.9 bits (276), Expect = 1.1e-24
Identity = 82/198 (41.41%), Postives = 108/198 (54.55%), Query Frame = 0


Query: 6   QASQGSALIVD------------EEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLA 65
           +++QGS ++ +            EE+QQ++AA E   KKKKKK R+P ND QW    DLA
Sbjct: 438 ESTQGSVIVKEATVSKLNTQAPKEEMQQQVAAGEP-GKKKKKKPRVPGNDMQWNPVPDLA 497

Query: 66  TENYMMPMG-GPAPYN-----------------PYWSGMQPGFDGYMSSYAAAPMPYMGG 125
             +YMM MG GP  +N                 P ++G  PGF+G+   +  A  P+M G
Sbjct: 498 GPDYMMQMGPGPQYFNGMQPGFNGVQPGFNGVQPGFNGFHPGFNGFGGPFPGAMPPFM-G 557

Query: 126 YGLGPLDMPFG---PVMPQDPFAMQSYMFP-VAPPQRDLADFGMGMNIAPPTMSREEFEA 170
           YGL P+DM FG    +M  DPF  Q + FP + PP RDLA+ G  MN+    M R+E EA
Sbjct: 558 YGLNPMDMGFGGGMNMMHPDPFMAQGFGFPNIPPPHRDLAEMGNRMNLQRAMMGRDEAEA 617

[Close]

BLAST of Clc10G02700 vs. TAIR 10
Match: AT4G17410.3 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 17  EEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMPMGGPAPYNPYWSGMQP 76
           EE+ Q++A+ E   K+KKKK R+        +  DLA  +YMMPM GP P N Y++G QP
Sbjct: 457 EEMPQQVASGEQAGKRKKKKPRM--------SGTDLAGPDYMMPM-GPGPGNQYFNGFQP 516

Query: 77  GFDGYMSSYAAAPMPYMGGY-------GLGPLDMP------FGPVMPQDPFAMQSYMFP- 136
           GF+G    +      + G +       G  P  MP      FG V+  DPFA Q + FP 
Sbjct: 517 GFNGVQHGFNGVQPGFNGFHHGFNGFPGPFPGAMPPFVGYGFGGVIHPDPFAAQGFGFPN 576

Query: 137 VAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERR 168
           + PP RDLA+ G  MN+  P M REEFEA+K    ++RK ENE R
Sbjct: 577 IPPPYRDLAEMGNRMNLQHPIMGREEFEAKKT--EMKRKRENEIR 610

[Close]

BLAST of Clc10G02700 vs. TAIR 10
Match: AT4G17410.2 (DWNN domain, a CCHC-type zinc finger )

HSP 1 Score: 93.6 bits (231), Expect = 1.9e-19
Identity = 69/165 (41.82%), Postives = 91/165 (55.15%), Query Frame = 0


Query: 17  EEVQQKMAASEAVKKKKKKKVRLPANDFQWKTSQDLATENYMMPMGGPAPYNPYWSGMQP 76
           EE+ Q++A+ E   K+KKKK R+        +  DLA  +YMMPM GP P N Y++G QP
Sbjct: 457 EEMPQQVASGEQAGKRKKKKPRM--------SGTDLAGPDYMMPM-GPGPGNQYFNGFQP 516

Query: 77  GFDGYMSSYAAAPMPYMGGY-------GLGPLDMP------FGPVMPQDPFAMQSYMFP- 136
           GF+G    +      + G +       G  P  MP      FG V+  DPFA Q + FP 
Sbjct: 517 GFNGVQHGFNGVQPGFNGFHHGFNGFPGPFPGAMPPFVGYGFGGVIHPDPFAAQGFGFPN 576

Query: 137 VAPPQRDLADFGMGMNIAPPTMSREEFEARKAGLGLRRKHENERR 168
           + PP RDLA+ G  MN+  P M REEFEA+K    ++RK ENE R
Sbjct: 577 IPPPYRDLAEMGNRMNLQHPIMGREEFEAKKT--EMKRKRENEIR 610

The following BLAST results are available for this feature:

BLAST of Clc10G02700 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448826.1	3.6e-89	91.05	PREDICTED: E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucumis melo]	[more]
TYK12034.1	3.6e-89	91.05	E3 ubiquitin-protein ligase RBBP6-like isoform X1 [Cucumis melo var. makuwa]	[more]
XP_038903839.1	2.3e-88	91.85	E3 ubiquitin ligase PQT3-like isoform X1 [Benincasa hispida]	[more]
XP_031738179.1	3.1e-88	92.02	E3 ubiquitin ligase PQT3-like isoform X3 [Cucumis sativus]	[more]
XP_004147218.2	3.1e-88	92.02	E3 ubiquitin ligase PARAQUAT TOLERANCE 3 isoform X1 [Cucumis sativus] >KGN55851....	[more]

BLAST of Clc10G02700 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B9DFV2	1.6e-23	41.41	E3 ubiquitin ligase PQT3-like OS=Arabidopsis thaliana OX=3702 GN=At5g47430 PE=1 ...	[more]
F4JP52	6.5e-17	41.21	E3 ubiquitin ligase PARAQUAT TOLERANCE 3 OS=Arabidopsis thaliana OX=3702 GN=PQT3...	[more]

BLAST of Clc10G02700 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CLI7	1.7e-89	91.05	E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo var. makuwa OX...	[more]
A0A1S3BK09	1.7e-89	91.05	E3 ubiquitin-protein ligase RBBP6-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A0A0L6U2	1.5e-88	92.02	DWNN domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G019910 PE=4 S...	[more]
A0A1S3BKM0	1.6e-87	90.53	E3 ubiquitin-protein ligase RBBP6-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC...	[more]
A0A6J1KZE7	2.6e-85	91.26	E3 ubiquitin ligase PQT3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11150...	[more]

BLAST of Clc10G02700 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G47430.1	1.1e-24	41.41	DWNN domain, a CCHC-type zinc finger	[more]
AT5G47430.2	1.1e-24	41.41	DWNN domain, a CCHC-type zinc finger	[more]
AT5G47430.3	1.1e-24	41.41	DWNN domain, a CCHC-type zinc finger	[more]
AT4G17410.3	1.9e-19	41.82	DWNN domain, a CCHC-type zinc finger	[more]
AT4G17410.2	1.9e-19	41.82	DWNN domain, a CCHC-type zinc finger	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..184
None	No IPR available	PANTHER	PTHR15439:SF13	E3 UBIQUITIN LIGASE PQT3-LIKE	coord: 16..170
IPR033489	E3 ubiquitin-protein ligase RBBP6 family	PANTHER	PTHR15439	RETINOBLASTOMA-BINDING PROTEIN 6	coord: 16..170

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G02700.1	Clc10G02700.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006397	mRNA processing
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0061630	ubiquitin protein ligase activity
molecular_function	GO:0008270	zinc ion binding