Clc09G17750 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAAAAGAGTAGGAAGGGAAGTGTGAGATTTGATCCTCATCCTCAAAATTGTTGTACTCAAAGGAGGTTATATATATAAATATTAGTACTCTGTTGGGTCGGGTTGACCTGAAAATTTTATATCCCAACCCAAGATCCAATTCAAACCAAAAATAAATCTTACCAAATCCAACCCAACTCTTCAAGTTTGAGTTGGGTAGTCCAGGTTATTCGGACTATCTAGTTATTTGAACACCTAAAGTGGATGAATCCCCATATTGGACAAAAAGTATTTGGAGTGACAAGCAAGTAATAACCCATACATTAACATCAATATTTCGAGTTAAACAATTTGTTAGATTTAAAAAAAAAAAAAAAATTGTCATTACCCTCTCATTTAGATAATGTGTACTATATTTAATTTAGGCTATTGAGTTTTTTTAATTTATCTTTTTTTTTTAATTTATTGAAATTACAAATATTAAATTTCTACCATTGAAAAATCAGATACTAAAATGAAATTGAAGTCATTAACATAACACTATTTACATCCAAAAAGTTGTATGAAAATTAGAGAAAATGCATGAAGTATAAAAAAGAGCCACACAAATAGAAAGACCAAGAAAATACAAAAGGAAAAACAAAATATTTTTTTGGTTTATAGAATTTTGGTCTATTTTTATTTTGGTCCCTAAGTTTCGAAATATAGCTCTTTTAGTATTTAAATTTCGAGTTTGATTTCAATTTAGTCCCTATGTTTTAAAATGTTACAATTTTACCCTTAAAAGTTTGAGTTTTGTTTCAATTTTACCCTTAATTGCTAGGTTTCGAGCTTTTCATTAAATACTCGCTTTCAATCTTGAGTATTAATGTCTATTAATTAATTTAAAAGAATTATAATTGAAACTAAATAAGAAATCTAAGGACATGAAAGGTAGGGAAAATGGAAAAAATCACCCATAAAGTACAACGATAGCTACGATTACACTCTCAAACTTTCAATTCTAAAAATTAAGCCCTCGAACTTATATTATAAATGTTAAAATTGAACCCTCAAACTTACAATTATTATAGAATTGGACCTCAAAATGATAAAAATTAACTCCCAAATTTATACTGTTGTTAAAATTTGTACCATCAACAATTGTATAAATTTAAGTAATTACAATGATGGTGTGATATTTACCTTTGCCCAAAAAGGTATTTTCCGAAAAAAGGTGAAAGAAAATTAGAAAAGAAATGGGCAAAAGAGTCATTTGGATTCGTGCATAATGTTGACTTGACATCCTTTATCAGTCTTCGATCTCTGGACGTTAAGCGTGCATTTCCTCTTCCCATTATTCACTGTTCCTCTACAGTTCCCTTACACTTCCCTCTCTCCTCTGGCTTTCCCTTCCATTTCCTTTGTCTCTCAAACTTTCCATTCCCCTCTCGATCTTCACACGATTCGGCTAAAAGGCGAGAGCCTGCTTAATTCTTCGGTTTCTTCCCTTCCCCTTTTAATTCTCTGCTTTTCATTTCATAACTTCAATTGTTTTTTGTCTTTTATGTTCTTGTCCTTGATTTCTTTCCTTCTTTTGTTCAATGGGTTCTTTGATTTTTCTTCTATGGAATAATGGGGACGACCTTTGGAGTGGCGGCATTAATGGGTTTGATTTTTTATTGCGTTCTTTGGATTTATCGATGATGTGATTCTGTGTTTTTCTTGACTGGTTTTGTTGTATTGCTTATGGAGATGGAAATAGGAATTGCTTTTTCGGGTGAGGAATTTAAATTTTCTCGGTTGTTTTTAGGAAAAGAATTGGGATGACCATTCTTGCTTTCTTTTTCTTTGGAATTAGCATGCTTTTACTATTCCCTTTCTGTAAATGAGAACATATGTTTTCATTGATGCTCACTACTGTTGGGATTGTAGTATTCATTATGTGGTTTGGAAAATGAAGGGGCAGAGGGAGAATATGCTAGAGAATTCTCTTCCTTTGTGTCTGTAGAGTTGCAAAAGTTCGTTATGATGCTTAGCTCAGAGATTGGGACTACTGATGTTTCGTCTCATATGTTTGAATATAGCTAGCTTATTATTTCTTTTTATGCATCCTTAATTTGATTGGTCAGTAAGTTGGTGGTGTGATAGAGGTTTTATTGCTGAACAGTCGATTGCTATCTTGATTTTGTGCAGGTAAATTACGGAAGTGACTGTAAACAAGTACTTGGAGATAAAAGGAACTATATAGGAACAATAATATGCCTTGGTTGAGTTTTACTGTCGACGTATTTCACAAAGTTGTGCGCCTGAAAATATGTTGTTGGGTTATATTATAGATTGTTTCTCGCCCCATTGAACATTTCCTACTTCAGTTCTTATCTGCTTCATATCATCTAACCATGGGATCCAATCACTTTTTTATCATTGCCTCTGATATATACATCAGCTGAAGCCAATATACTGTCTCAATTCTGTCTCAGGCTTCAGTTTTATATTCCAATTTTAGGACTCCAAGCTATTGTTCCTTTTAGTTTGCTTAAGATTTTCGAATTCTCTACTCTTGTTCAGTTCCCCTGTGTTATGTTTGCTGGTTGGTGTACTCTGAACTTTGAAAAACCTACTTGGCCTTTGTTTCATTGTGTAGTCCCTTCTGTCTCACATCATTTTTATCCTTCAGCATAGTAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCAAGTCAAACACGATTTCGGGCTTTGAAACATGAAAATGGGATTGCAGGGAAGCCAACAATTATTGTTAAAGTGATTGCATGTTTTCAACCTTTGCAGAATTGCCAGGTATACACAGCTAGATTTCTCAACCCTTTGATTTCTGTGTTTTGTTTTCATGGTCAATGAATTTGTGACAATGAAGATAATTGACTCCTGGAACTATATGGTTAACGTTGCTGTTTTTTTTTTTCTCCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTGTCACGTAGATCAATTTGTGATTTTTACGATAAACTTGAGCTGAAGTTTCACTTTTGTTCTTTTAATTATTTGTTTCTGAAAGAATCAGCTAGTAATTGAAGAGAGGAAATCAGAGACATATTCATCTTGTGGTAGGTTTTGCCAGTCTTGCTTAAAATGATCTCAAGCAATTATTTTTATTTATTTATTTATTTATTTATTTTTTATGGTTTCCTTCTGAAAATTAGTTATTTCTGTTCATTGTCAATGTTAGGTAATTGTTTATTGTTGGATGGTTAAGACTGGAGATTCTTTGCCTCAACCTGGGCATTCTGCTGGGAACCTGCCCAATTTAAATTGCATGAATAAGTTGCTAAATTTCAGATTGCAATGTCCAAACCCAGACACTTATATCTCTTCTGCACAAACGGAATTTTGGGGATCTTCTATTCAACATGGTTTGAATTCAGAACAGAAGAATGGGTTGCTTCATAGCTTTCCATCTTACATCAAGACCATGCGTTCCAATGTACTTCCATGCCTTGTGGAGAAACACTATGATTCATCTTTGGGATTTGCACAAATGACCTTACCTGGTTCAAATACTGACTTTTCTAAGAGGGAATTCATTATCTTTGATCAGTCTGGAAATCAAACAAGTGTAATGTATAGTTCTGGTTCTGCTCAGATCCCTATATCAATTAGTGCAAAGAATTGTAGTCATGGCTTAAATGATGATGATGAAGAAGAAGCTGCTGGGGATATTGATTTAAAAAATTATTTATTTCACAAAGGTCCTGTGAAAAATGGAATTGCTGGTGAGGAGAGTGAGATGCATGAAGACACAGAAGAAATAAACGCCTTGCTTTATTCAGATGATGACAATCACTATAGCAGCGATGATGAAGTAACTAGCACTGGTCATTCTCCACCGCTAATTAAGGAACTTTATGACGAACAAATTGAGGAAATGAATGAGGAAGTTGCTAGTTCTGATGGCCCCAGAAAAAGGCAGAGAATGCTACATGGTGGGCACAAGAAATTGTCAGATGCTCCTGTTTCAGTGAAAGTAGATCCATTTAACAACTACAGAGTTGATATGAAATCAAGCTACACTGGTGGTGATAGCCAAGGACATCTAATGGATTCCAGTTTGGGAAATTTTTCATCAAAAAAAGACAAGCTAAGAGAGATTTTGAAACTTCTTGAAACCATGGTTCCTGGTGCTGAGGGCAAGCACCCAATTTTGGTCATTGATGAAGCTATAGACTACTTGAAGTCTCTAAAGTTTAAAGCAAAAGCTATGGGGCTGGCTGCTGCCACACTCCCTCACGGTGATGTCGGTCAAGGATTCCAGGATGGGAGAAAAAAGTGGTGA ATGGAAAAGAGTAGGAAGGGAAGTGTGAGATTTGATCCTCATCCTCAAAATTGTTGTACTCAAAGGAGCGTGCATTTCCTCTTCCCATTATTCACTGTTCCTCTACAGTTCCCTTACACTTCCCTCTCTCCTCTGGCTTTCCCTTCCATTTCCTTTGTCTCTCAAACTTTCCATTCCCCTCTCGATCTTCACACGATTCGGCTAAAAGGCGAGAGCCTGCTTAATTCTTCGGTAAATTACGGAAGTGACTGTAAACAAGACTCCAAGCTATTGTTCCTTTTAGTTTGCTTAAGATTTTCGAATTCTCTACTCTTGTTCAGTTCCCCTGTGTTATGTTTGCTGCATAGTAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCAAGTCAAACACGATTTCGGGCTTTGAAACATGAAAATGGGATTGCAGGGAAGCCAACAATTATTGTTAAAGTGATTGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTAGAGGAAATCAGAGACATATTCATCTTGTGGTAATTGTTTATTGTTGGATGGTTAAGACTGGAGATTCTTTGCCTCAACCTGGGCATTCTGCTGGGAACCTGCCCAATTTAAATTGCATGAATAAGTTGCTAAATTTCAGATTGCAATGTCCAAACCCAGACACTTATATCTCTTCTGCACAAACGGAATTTTGGGGATCTTCTATTCAACATGGTTTGAATTCAGAACAGAAGAATGGGTTGCTTCATAGCTTTCCATCTTACATCAAGACCATGCGTTCCAATGTACTTCCATGCCTTGTGGAGAAACACTATGATTCATCTTTGGGATTTGCACAAATGACCTTACCTGGTTCAAATACTGACTTTTCTAAGAGGGAATTCATTATCTTTGATCAGTCTGGAAATCAAACAAGTGTAATGTATAGTTCTGGTTCTGCTCAGATCCCTATATCAATTAGTGCAAAGAATTGTAGTCATGGCTTAAATGATGATGATGAAGAAGAAGCTGCTGGGGATATTGATTTAAAAAATTATTTATTTCACAAAGGTCCTGTGAAAAATGGAATTGCTGGTGAGGAGAGTGAGATGCATGAAGACACAGAAGAAATAAACGCCTTGCTTTATTCAGATGATGACAATCACTATAGCAGCGATGATGAAGTAACTAGCACTGGTCATTCTCCACCGCTAATTAAGGAACTTTATGACGAACAAATTGAGGAAATGAATGAGGAAGTTGCTAGTTCTGATGGCCCCAGAAAAAGGCAGAGAATGCTACATGGTGGGCACAAGAAATTGTCAGATGCTCCTGTTTCAGTGAAAGTAGATCCATTTAACAACTACAGAGTTGATATGAAATCAAGCTACACTGGTGGTGATAGCCAAGGACATCTAATGGATTCCAGTTTGGGAAATTTTTCATCAAAAAAAGACAAGCTAAGAGAGATTTTGAAACTTCTTGAAACCATGGTTCCTGGTGCTGAGGGCAAGCACCCAATTTTGGTCATTGATGAAGCTATAGACTACTTGAAGTCTCTAAAGTTTAAAGCAAAAGCTATGGGGCTGGCTGCTGCCACACTCCCTCACGGTGATGTCGGTCAAGGATTCCAGGATGGGAGAAAAAAGTGGTGA ATGGAAAAGAGTAGGAAGGGAAGTGTGAGATTTGATCCTCATCCTCAAAATTGTTGTACTCAAAGGAGCGTGCATTTCCTCTTCCCATTATTCACTGTTCCTCTACAGTTCCCTTACACTTCCCTCTCTCCTCTGGCTTTCCCTTCCATTTCCTTTGTCTCTCAAACTTTCCATTCCCCTCTCGATCTTCACACGATTCGGCTAAAAGGCGAGAGCCTGCTTAATTCTTCGGTAAATTACGGAAGTGACTGTAAACAAGACTCCAAGCTATTGTTCCTTTTAGTTTGCTTAAGATTTTCGAATTCTCTACTCTTGTTCAGTTCCCCTGTGTTATGTTTGCTGCATAGTAAAGGGTTAAAAGTAGTTATGGTGTGCCAAGCAGCAAGTCAAACACGATTTCGGGCTTTGAAACATGAAAATGGGATTGCAGGGAAGCCAACAATTATTGTTAAAGTGATTGCATGTTTTCAACCTTTGCAGAATTGCCAGGCTGAGTACTTCCGTCATTTGCTCAAACCTAGAGGAAATCAGAGACATATTCATCTTGTGGTAATTGTTTATTGTTGGATGGTTAAGACTGGAGATTCTTTGCCTCAACCTGGGCATTCTGCTGGGAACCTGCCCAATTTAAATTGCATGAATAAGTTGCTAAATTTCAGATTGCAATGTCCAAACCCAGACACTTATATCTCTTCTGCACAAACGGAATTTTGGGGATCTTCTATTCAACATGGTTTGAATTCAGAACAGAAGAATGGGTTGCTTCATAGCTTTCCATCTTACATCAAGACCATGCGTTCCAATGTACTTCCATGCCTTGTGGAGAAACACTATGATTCATCTTTGGGATTTGCACAAATGACCTTACCTGGTTCAAATACTGACTTTTCTAAGAGGGAATTCATTATCTTTGATCAGTCTGGAAATCAAACAAGTGTAATGTATAGTTCTGGTTCTGCTCAGATCCCTATATCAATTAGTGCAAAGAATTGTAGTCATGGCTTAAATGATGATGATGAAGAAGAAGCTGCTGGGGATATTGATTTAAAAAATTATTTATTTCACAAAGGTCCTGTGAAAAATGGAATTGCTGGTGAGGAGAGTGAGATGCATGAAGACACAGAAGAAATAAACGCCTTGCTTTATTCAGATGATGACAATCACTATAGCAGCGATGATGAAGTAACTAGCACTGGTCATTCTCCACCGCTAATTAAGGAACTTTATGACGAACAAATTGAGGAAATGAATGAGGAAGTTGCTAGTTCTGATGGCCCCAGAAAAAGGCAGAGAATGCTACATGGTGGGCACAAGAAATTGTCAGATGCTCCTGTTTCAGTGAAAGTAGATCCATTTAACAACTACAGAGTTGATATGAAATCAAGCTACACTGGTGGTGATAGCCAAGGACATCTAATGGATTCCAGTTTGGGAAATTTTTCATCAAAAAAAGACAAGCTAAGAGAGATTTTGAAACTTCTTGAAACCATGGTTCCTGGTGCTGAGGGCAAGCACCCAATTTTGGTCATTGATGAAGCTATAGACTACTTGAAGTCTCTAAAGTTTAAAGCAAAAGCTATGGGGCTGGCTGCTGCCACACTCCCTCACGGTGATGTCGGTCAAGGATTCCAGGATGGGAGAAAAAAGTGGTGA MEKSRKGSVRFDPHPQNCCTQRSVHFLFPLFTVPLQFPYTSLSPLAFPSISFVSQTFHSPLDLHTIRLKGESLLNSSVNYGSDCKQDSKLLFLLVCLRFSNSLLLFSSPVLCLLHSKGLKVVMVCQAASQTRFRALKHENGIAGKPTIIVKVIACFQPLQNCQAEYFRHLLKPRGNQRHIHLVVIVYCWMVKTGDSLPQPGHSAGNLPNLNCMNKLLNFRLQCPNPDTYISSAQTEFWGSSIQHGLNSEQKNGLLHSFPSYIKTMRSNVLPCLVEKHYDSSLGFAQMTLPGSNTDFSKREFIIFDQSGNQTSVMYSSGSAQIPISISAKNCSHGLNDDDEEEAAGDIDLKNYLFHKGPVKNGIAGEESEMHEDTEEINALLYSDDDNHYSSDDEVTSTGHSPPLIKELYDEQIEEMNEEVASSDGPRKRQRMLHGGHKKLSDAPVSVKVDPFNNYRVDMKSSYTGGDSQGHLMDSSLGNFSSKKDKLREILKLLETMVPGAEGKHPILVIDEAIDYLKSLKFKAKAMGLAAATLPHGDVGQGFQDGRKKW Homology
BLAST of Clc09G17750 vs. NCBI nr
Match: KAG6571857.1 (Transcription factor basic helix-loop-helix 143, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 677.2 bits (1746), Expect = 1.2e-190 Identity = 347/431 (80.51%), Postives = 376/431 (87.24%), Query Frame = 0
BLAST of Clc09G17750 vs. NCBI nr
Match: KAG7022534.1 (Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 669.1 bits (1725), Expect = 3.3e-188 Identity = 341/408 (83.58%), Postives = 363/408 (88.97%), Query Frame = 0
BLAST of Clc09G17750 vs. NCBI nr
Match: KAG7011543.1 (Transcription factor bHLH, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 659.4 bits (1700), Expect = 2.6e-185 Identity = 340/430 (79.07%), Postives = 368/430 (85.58%), Query Frame = 0
BLAST of Clc09G17750 vs. NCBI nr
Match: XP_038887815.1 (transcription factor bHLH143-like [Benincasa hispida]) HSP 1 Score: 640.2 bits (1650), Expect = 1.6e-179 Identity = 325/363 (89.53%), Postives = 337/363 (92.84%), Query Frame = 0
BLAST of Clc09G17750 vs. NCBI nr
Match: XP_008455136.1 (PREDICTED: transcription factor bHLH143-like isoform X1 [Cucumis melo] >TYK06886.1 transcription factor bHLH143-like isoform X1 [Cucumis melo var. makuwa]) HSP 1 Score: 626.7 bits (1615), Expect = 1.9e-175 Identity = 317/364 (87.09%), Postives = 335/364 (92.03%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy Swiss-Prot
Match: Q9FY69 (Transcription factor bHLH143 OS=Arabidopsis thaliana OX=3702 GN=BHLH143 PE=1 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 3.6e-28 Identity = 90/230 (39.13%), Postives = 140/230 (60.87%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy Swiss-Prot
Match: Q9FMF4 (Transcription factor SAC51 OS=Arabidopsis thaliana OX=3702 GN=SAC51 PE=2 SV=1) HSP 1 Score: 123.2 bits (308), Expect = 8.9e-27 Identity = 97/249 (38.96%), Postives = 130/249 (52.21%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy Swiss-Prot
Match: Q9FGB0 (Transcription factor bHLH145 OS=Arabidopsis thaliana OX=3702 GN=BHLH145 PE=1 SV=1) HSP 1 Score: 95.1 bits (235), Expect = 2.6e-18 Identity = 79/233 (33.91%), Postives = 124/233 (53.22%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy Swiss-Prot
Match: Q9ASX9 (Transcription factor bHLH144 OS=Arabidopsis thaliana OX=3702 GN=BHLH144 PE=1 SV=1) HSP 1 Score: 51.2 bits (121), Expect = 4.3e-05 Identity = 60/231 (25.97%), Postives = 99/231 (42.86%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy TrEMBL
Match: A0A5D3C989 (Transcription factor bHLH143-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001910 PE=4 SV=1) HSP 1 Score: 626.7 bits (1615), Expect = 9.1e-176 Identity = 317/364 (87.09%), Postives = 335/364 (92.03%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy TrEMBL
Match: A0A1S3BZT1 (transcription factor bHLH143-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103495379 PE=4 SV=1) HSP 1 Score: 626.7 bits (1615), Expect = 9.1e-176 Identity = 317/364 (87.09%), Postives = 335/364 (92.03%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy TrEMBL
Match: A0A0A0K268 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G066270 PE=4 SV=1) HSP 1 Score: 620.2 bits (1598), Expect = 8.5e-174 Identity = 313/364 (85.99%), Postives = 332/364 (91.21%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy TrEMBL
Match: A0A6J1CJJ9 (transcription factor bHLH143-like OS=Momordica charantia OX=3673 GN=LOC111012200 PE=4 SV=1) HSP 1 Score: 575.9 bits (1483), Expect = 1.8e-160 Identity = 298/366 (81.42%), Postives = 321/366 (87.70%), Query Frame = 0
BLAST of Clc09G17750 vs. ExPASy TrEMBL
Match: A0A6J1EIH7 (transcription factor bHLH143-like OS=Cucurbita moschata OX=3662 GN=LOC111434563 PE=4 SV=1) HSP 1 Score: 563.9 bits (1452), Expect = 7.3e-157 Identity = 285/340 (83.82%), Postives = 307/340 (90.29%), Query Frame = 0
BLAST of Clc09G17750 vs. TAIR 10
Match: AT5G09460.1 (sequence-specific DNA binding transcription factors;transcription regulators ) HSP 1 Score: 127.9 bits (320), Expect = 2.6e-29 Identity = 90/230 (39.13%), Postives = 140/230 (60.87%), Query Frame = 0
BLAST of Clc09G17750 vs. TAIR 10
Match: AT5G64340.1 (sequence-specific DNA binding transcription factors;transcription regulators ) HSP 1 Score: 123.2 bits (308), Expect = 6.3e-28 Identity = 97/249 (38.96%), Postives = 130/249 (52.21%), Query Frame = 0
BLAST of Clc09G17750 vs. TAIR 10
Match: AT5G50010.1 (sequence-specific DNA binding transcription factors;transcription regulators ) HSP 1 Score: 95.1 bits (235), Expect = 1.8e-19 Identity = 79/233 (33.91%), Postives = 124/233 (53.22%), Query Frame = 0
BLAST of Clc09G17750 vs. TAIR 10
Match: AT5G50011.1 (conserved peptide upstream open reading frame 37 ) HSP 1 Score: 84.3 bits (207), Expect = 3.2e-16 Identity = 39/51 (76.47%), Postives = 44/51 (86.27%), Query Frame = 0
BLAST of Clc09G17750 vs. TAIR 10
Match: AT5G09461.1 (conserved peptide upstream open reading frame 43 ) HSP 1 Score: 81.3 bits (199), Expect = 2.7e-15 Identity = 36/52 (69.23%), Postives = 44/52 (84.62%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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