Clc09G16930 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G16930
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Reverse transcriptase
Location	ClcChr09: 27070330 .. 27077089 (-)
RNA-Seq Expression	Clc09G16930
Synteny	Clc09G16930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGTAGGAGAAGTCACTTCACAATTGTCACAGTTGACAATTCAACTGACCTTGAGACAGAAGATTATTGATACACAACAAGGCGATCCTTATTTTGTGGAGAAGTTTTGCGAGGTGCAGTCGGAACAAGATAGGGAGTTCTTAGTATACTCAAATAATGGTCTCTATTATCAGAGACGCCTATGTGTTCCTGCAAACGGAAATGTTAAGAACGAATTGTTGGCAGAAGCTCATAGCTCTCCATTCACAATACATCCTGAAGGTACCAAGATGTACCAGGACTTGAAACGTTATTACTGGTGGCATAATATGAAGAAAGAGGTAGTTGGGTTTGTCAGCTAATTCCTGGTATGTCAGCAGGTAAAGGCTCCGAGGTAGAAGCTAGTTGGGGTTATTGCAGCCATTGAATGTACCTAAGTGGAAATAGGAAAATGTGTATGTAGACTTCATTGTGGCTTTGTCAAGAACAGTAAAAGCCATACAGTAATATGGGTTGTAGTCGATAGACTTACCAAGTCAGCTCATTTTATTCCAAGCAGGTCTACATATTCAGTGAGTAAGTGAGCACACATATATATGAAAGAGGTAGTGAGATTGCATGGAGTGCCTGTTTCGATATTGTCGGATAGAGACCCTCGCTTCACGTCCAGTTTTTGGAAGAGTCTTTAGTCAGCATTCGGTACTCAGTTAAATTTTAGTACAACTTTTCAACCACAAACCGATGGTCAAACTGAACGTTTGAATCAAATATTGGAGGATATGTTATGCACCTGTGACGATTTTATAGGGAGTTGGAATTCCCATTTGCATCTCATGGAGTTTGCTTATAATAACATCTATTAGGTTACTATTGGCATGACGCCTTTTGGAGTCCTATATGGAAAGAGTTGCAAATCTCTTGCTTACTAGGATGAGGTTGGAGAGCGAAAATTTTTGGGACCTGAGTTACTGCAGACTACTAATGAGGTCATTCAGAAGATCAGGGCAAGGATGCAGACAGCTTAGAGAAGACAGAAAGTTACACCGATGTGAGAAGGTGAGACCTAGAGTTTGAGGTAGGTGATAAAGTGTTTCTTAAAGTGGCACCTATGAAAGATGTCTTGAGGTTTGGAAGGAAGGAGAAGTTGAATCCACATTTCATTAGGCCATTTGAAATATTAGAGCAAGTGGCCTTGTAGCTTATCGTTTGACTTTGCCACCGTCGCTCTCTGCAGTTCATAATGTCTTCCATGTTTCTATGTTGAGGAAGTATATGGAAGATTTGTCTCATGTAGTAGATTATGAACCCTTGCGCAAATGAATGAGAACCCGAGTTATGAGGAGACCCGATTCAAGTTCTTACAAAGGAAGTAAAGATTTTGCGCAATCGAGGGATAGCGTTGGTGAAAGTCCTATGGCAGAATCACCAGTTCAAGGAAGCAACATGGGAACATGAAGATGACATGAGATTGAAGTACCTTGAGCTCTTCTAAGATTAGAACTTTTGAGGTCAAAAGTTTCTTTTAAGGATGGAAGAATATGACATCCCAAATTTTAAAGGTAATTTTCAATGTAATTATCTTAAATTATTTAGGTGTTATTTTGAGTTTGGGGCTAAAATTGAGTTATTAGGGTTAAATTTTTCAATTTAAATTAAGTGAGGAAGATTTAAAACTTTGGATTTAACTCAATTGGTGAGAATTTATTTGAAAGTGGAGGAGATTTGAAAATTTAGTCTAATTTAAGATAAGTTGGATTTGATATGTTAAAGGAATATTAAATGGAATTAGTTTTAGAGATATATATATATATATATATTATAGAAAAGAAGCCCTATGGAAGCATGCAGAAGGAATTTTTTTTTCTCTTCTTCTTCTACATGAAAAAACAGTGGTTGTCTTTCTTTCTCTGCAAATTCCCTTAGCCGCTGACCATTGCGACGCCGCTGCCTTCACCGTCATTCATGAGCCACAGTCCGACATCGTGCGTAGGGACACAGTCACCGATTGTCACCACCTCTGTTTGCTTGATTGTCTGCTCATCGTTTCTGGTCGTCGCAGCTATTCTGTCGTTTTTGGACCAACCTCTTTATCTTCGTCATGCCGCCGGGCGTCGTTTTGGTCGTCGTTTCCATCCACCACCGGAAGCCACCATTTGCTCGCTAGAAAGTTGGTTGGGCAAGGGCTTTTGGTGTTTTCTTTTGGGTTTTTTTTTTTATTTTTTTATTTTTTTATTTTTTTATAGTTATTTTGGGTACGCACTAAGTTTGGGTTAAATTTGGTTGATGCCCATTGTGTTTTGGCTTCAGATTTGGGTTTTGGAGGTGTTTAAAATCGGAAGTGTGCTGTCCAACGGAGTCAAAAGTCGATTTTAGTGGTTTCGATATGGTTTTTGAAGTATCTTTCGTTACCTATTAACCTTTGGTTCCAATTGGTTAAAACCCATGGGATGATAGATTTGTGATTTGGAGTTTTTTTTGTAGCCATCCAGTAGGTTCGAGGTCATTTCCAACAAGAATTTGGTACAATGTTTACGTTTTCAGAGCCTTATGATGGGTTGTGGTTGGTGTAAATTAAGTTTTTAATTTGGTTTGTGGTTTATGTTCAAGTTGGGCTACTTAATTGAAGTTTAGAAGTGACTTTGAACCAAGCTACGTTTGGGTAATTTATTTGGAACAATTGAGAATTTTATGTTTTGTTTAAGTCTTAATGTTGTAAGTTAATTTCGTTTTGTAATTAAGGGTCGATTCAAAACCTTTTTCTACTTGAGATAAAATGGATTTTGGTTTGCTAATTGATGTGCATAAATATAAGGTAAGTAATTTTACTACTAGTATTGTCTTTGTGCTAGATAAATAATTTGAAAGTTACAGTTGATTTGTCTGCAACTAATTATATGTTTTGCATGTGTTTTAGATGATGTAAGGGTATATATGAGCACAATAACGTTTTTCATGAGATATGTTATGATTCCATGATTGTGGGACCTTTATGTTAGTACTAATTATGAATGTAAGTGATAATCACTCTCCTGTCATAGTTGTGTATCCACCAGAGGTTATATATTCCCTCAAGATCAACAGAGGTTATGTGTTTCTTCAGGACCACCAGAGGTTTAATGTATATTTCGAGATTCACTAAAGGTTTTGTGTTTCCTATGAGAATCACTAGAGGTTATGTGTATCATTCGGGATCTACCAGAGGTTTTGTGTTTCCTACGAAATTCACTAGAGACATGTGTTTCCCATCAAGATTCACTAGAGGTTTGTGGATACAACTCACCTACGGTAGGACAGGTTTAATTACTCACGCAATTTATTATGTATAAAAAGTGAAAAGTATGTCTCTCCCACTAGCATGTTGCATTTATTGGGCATAAATGCATAGTCTAGTTCTCTATAAAAACTTTCCTACAACAAAATTCTCTTCTCTTTCAAAAGAAGGTTCCCACAAACTAATTCCCGCTAGAGAATAATAGGGACGACAATATGGAGGTGTCACAGTATTGTACGTGGGAGATCGATCACAGAGAAGTTGTATGTGAAATTGTGAAGAATTGGAGAAGATTTGAAGAAGTGTTCTTGATGGACAAAATTCGTCGTCCAATTCTGTGCCAAATAAATTTTTCTAACTTTACCCACAGTAGTAGCGGTAAGTCGGGTCGAACACAGGAAGACCTCGAATTTTACAGTTGAAAAGTTTAAAATTCAAGGTAACCAAAGGGGGGTTTGAAAAACGGTTGATTGCAAGAAAAACTAAATTTCATAAAAATAAAATGCGGAGGTAAAAGGAGTAAAATTCAATTGGAGAAGCTTTATGTGACAACCCCAAATTTCGAACCTAGCGTAGGTATCACTGCATTTAGCTCACCATCTACGTTAATAACCCTTTATGCCAAAAATTTCGGCAGCATAACGGCGCTACCACAACATATCCCAAATTTTTCCCGTAACCTATTTTAAAGAAACACTTCTAATCACATTGAAACCGACAGAATCATGCAACTCACCACATTGAAACAGAGCCCAACACAGAATTATTCAAAATGCCGCAAACTTTTAAATTATCAACCTAACAATTCAACAGTGAATAAAAGCACTCTATGAAAAATTAAGCTTGGTTCTAACACCATATAACTAAATATGATACCCAGGGTACATAAATTAAGCAAGATCCATTTGATAAGAGTTTTAAGGCAAAATTTCCTAACAAGAGAATAACATAGTAAAAGTAATCCCAAAATCTCTCTTTGGTCTTTCTCAAGCTTCCTCCTCACTATCACCAAGGTCATGTAGCCTATCATTTCCTGCAAATTCTAATTTGGGGGAAAGGGGACGACAGTATACACTTATAATGGTAAGTAGTCCACCAGAAGGGCTATCATACAATACATGCATCATGCAAAAGGCACACAACAAATCTTAGGTAAAGTTCAACATACTAGGATTTCAAGAACATATTCTCATACACAAAGACTAACAACAATTCTTTACCCACACTCTTAGTGCACAATCCTTGACCATTTATACCTAAGGCCCCGAGCCCTACATCGACCCTTGGCCATTTGTACCCAAGGCCTCGACACTTACTCGTCACACTGACCCTTGGCCATTTGTACCCAAAGCCTCAATGCTTGTCTTAGTACCCAAGGCCTCGACGCTTACCCTAAACTCGTCACACTGACCCTTGGCCAAGCATAAAGGTCAGTTTATAAGGGATTTTAAGTTGTTGGATTTTTGGCCCTTAATCTCAAATTAATTAATTTTAATGGATTGATTAATTAGTGTTTTGATGATAACAAACCTGATTTTATTTATTAACCATTTGAGTGTTTTGAAGTGTCCATTGTGTGGAGCTTGGAACAACGGTTCCAATGCAATTTGAATCACTCAAATCGGAGTTCAAAAAGAAGATATGATTGAAACAAGCTTAAAAGAAAAATCTCGAGCTGATGACGTGGCATATTTTTTTTAATCAAAGTGGACAAATTAAAAGGTGCCACTTGGAGTAATGGAGAAGTGACAATTGGTGGGTATTTTATTTTTGGATTGATGTTAAAAAGAAAATGATTTTAAAAAGAAAATAAATTTAAAAAGAAGATGAATTTAATATTATTATATATGTTTGTGTCTAACGGCCAGTTGCTTTTTTAAAAGGATTAATTTAATATTATATATGTTTATGTCTAACAGCTAGTTGCCTTTTTAAAAGGATTAATTTAATATTATTATATGTTTGTGTCTAACGGCTAGTTGAGTTTAAATCTCCACCATTCAATTTTCTTTTACAAAGATCTAATGGTCCAAATTAATTTGGTTTTCACTCACTTTCATTTCTTTTTAAATACTTCATCTTCTCCAAAAAGTTTTCCAACTTTTACAATTTTACAATCCTCAAAAATTGAAAAAGGTCACCATTGTTGCTCTCTCTCCAAGCTTTCAAATTTCTTTCTTTTCATCTTATTCTAGAGAGATACTTTCATTGTATTGTGAGGATTGAGTATTGTAAGTTCAAATTTGTACATCTACTCTTTTTAGAGAGTTTTAGTGTGTGATTTAAAACTTCAAGAATATTGTAACGATTGGATCCTAACCCGTGGAAAGGATAGGGTTTGCTCTTGAACCCGAAAAAGGAGCAAGGTAGCGGTTCGACTCTCATCCATGGAAAGAGTCAAAGGAGATTTTTTAATCGAAATCCCAAGAGGCGCTTGGAAAAGTGGATGTAAGTCGAGTTGGACCGAACCACTATAAAAATCAAGGTGTCTTCTTCTCCAACTCTTTCTCAATTTATTTTGCATTCAATTTTTAGTAGCATGTTATAGATTACTATCCTTCTTTGTTGAGATTGATTGAATCTTGTGTTTCATATATTTTTTATCAATCTTGATATTTAGCATCAATTAAGGTTTTTATTAATTTAATTCAAAAATTAATTCAATTAGTTTAATTTGAGCATATTTAGGAATAAGTTTAATTAAACCCTATTCACCCCCCTCTAGGGTTGCCATACCGATCCTACATAAGCGTTATCGACCTCCGACCTTCGACTGCTGGTCAGAGAAAGCTACGGCAACTGAGCAATGGATTGCAGAGCTGGAGTCATTGTTTGAATACCTGAATTGTGAGGACCATTTTAAGGTCAGAGGAGTAGTTTTCATGCTTCGAGACGAGGCGCGAATGTGGTGGAGATCCATTGAAGCCTCAGAAGATCATGCCGAAGGACCCATGACTTGGGCAAGGTTTAAGGACCTCCTATACGACTACTATTTTCCCGACAAAGTGAAGGACGACAAGGAAATAGAGTTCCTGCATCTAACCGAGTTGTCTTGTTTTGCACCCGACCTGGTGAGTACGTCAGAGAGGAGGATTAAAAGGTTCATTAGGGGCTTGCGCGAGGAAATTAGAGGTGCGGTCGCCTTAAAGGAGCCAATGACTTTTGCTGCAGCACTTAAGGCGGCACTGATCATGGACAAAAATATGGCCAAGAAACCTCAGGTGACACACTCACGTTGGGAGGTTGGCGCCTCATCTAGATTTAAAAGAAAGTCTCCCCCAGCTTCGTCAGATCAAACTTCCAAGGCCCATCGTCTGGCCTCGGGGCAAGCTACCACCCTCCCATTGTGCGGCTCATGCAACAAGCGTCACTTGGAGCAGTGCTGGCTAGGCCAGAGCATTTGCTTTAAGTGTGGAAAGGAAGGTCACTTTGCAAGGATGTGCCAAAATAAAAGGGAGGCCAGCGCAGACAAGCCGACCTCGAAGGCCTTACCAGAAGCTACTTAA

mRNA sequence

ATGGCGGTAGGAGAAGTCACTTCACAATTGTCACAGTTGACAATTCAACTGACCTTGAGACAGAAGATTATTGATACACAACAAGGCGATCCTTATTTTGTGGAGAAGTTTTGCGAGGTGCAGTCGGAACAAGATAGGGAGTTCTTAGTATACTCAAATAATGGTCTCTATTATCAGAGACGCCTATGTGTTCCTGCAAACGGAAATGTTAAGAACGAATTGTTGGCAGAAGCTCATAGCTCTCCATTCACAATACATCCTGAAGGTACCAAGATGTACCAGGACTTGAAACGTTATTACTGGTGGCATAATATGAAGAAAGAGGTAGTTGGACTACTAATGAGGTCATTCAGAAGATCAGGGCAAGGATGCAGACAGCTTAGAGAAGACAGAAAGTTACACCGATTGGTTGTCTTTCTTTCTCTGCAAATTCCCTTAGCCGCTGACCATTGCGACGCCGCTGCCTTCACCGTCATTCATGAGCCACAGTCCGACATCGTGCGTAGGGACACAGTCACCGATTGTCACCACCTCTGTTTGCTTGATTGTCTGCTCATCGTTTCTGGTCGTCGCAGCTATTCTGTCGTTTTTGGACCAACCTCTTTATCTTCGTCATGCCGCCGGGCGTCGTTTTGGTCGTCGTTTCCATCCACCACCGGAAGCCACCATTTGCTCGCTAGAAAGACCACCAGAGGTTTAATGTATATTTCGAGATTCACTAAAGGTTTTGTGTTTCCTATGAGAATCACTAGAGGTTATGTGTATCATTCGGGATCTACCAGAGGTTTTGTGTTTCCTACGAAATTCACTAGAGACATGTGTTTCCCATCAAGATTCACTAGAGGCCCCGAGCCCTACATCGACCCTTGGCCATTTGTACCCAAGGCCTCGACACTTACTCGTCACACTGACCCTTGGCCATTTGTACCCAAAGCCTCAATGCTTGTCTTAGTACCCAAGGCCTCGACGCTTACCCTAAACTCGGTTGCCATACCGATCCTACATAAGCGTTATCGACCTCCGACCTTCGACTGCTGGTCAGAGAAAGCTACGGCAACTGAGCAATGGATTGCAGAGCTGGAGTCATTGTTTGAATACCTGAATTGTGAGGACCATTTTAAGGTCAGAGGAGTAGTTTTCATGCTTCGAGACGAGGCGCGAATGTGGTGGAGATCCATTGAAGCCTCAGAAGATCATGCCGAAGGACCCATGACTTGGGCAAGGTTTAAGGACCTCCTATACGACTACTATTTTCCCGACAAAGTGAAGGACGACAAGGAAATAGAGTTCCTGCATCTAACCGAGTTGTCTTGTTTTGCACCCGACCTGGTGAGTACGTCAGAGAGGAGGATTAAAAGGTTCATTAGGGGCTTGCGCGAGGAAATTAGAGGTGCGGTCGCCTTAAAGGAGCCAATGACTTTTGCTGCAGCACTTAAGGCGGCACTGATCATGGACAAAAATATGGCCAAGAAACCTCAGGTGACACACTCACGTTGGGAGGTTGGCGCCTCATCTAGATTTAAAAGAAAGTCTCCCCCAGCTTCGTCAGATCAAACTTCCAAGGCCCATCGTCTGGCCTCGGGGCAAGCTACCACCCTCCCATTGTGCGGCTCATGCAACAAGCGTCACTTGGAGCAGTGCTGGCTAGGCCAGAGCATTTGCTTTAAGTGTGGAAAGGAAGGTCACTTTGCAAGGATGTGCCAAAATAAAAGGGAGGCCAGCGCAGACAAGCCGACCTCGAAGGCCTTACCAGAAGCTACTTAA

Coding sequence (CDS)

ATGGCGGTAGGAGAAGTCACTTCACAATTGTCACAGTTGACAATTCAACTGACCTTGAGACAGAAGATTATTGATACACAACAAGGCGATCCTTATTTTGTGGAGAAGTTTTGCGAGGTGCAGTCGGAACAAGATAGGGAGTTCTTAGTATACTCAAATAATGGTCTCTATTATCAGAGACGCCTATGTGTTCCTGCAAACGGAAATGTTAAGAACGAATTGTTGGCAGAAGCTCATAGCTCTCCATTCACAATACATCCTGAAGGTACCAAGATGTACCAGGACTTGAAACGTTATTACTGGTGGCATAATATGAAGAAAGAGGTAGTTGGACTACTAATGAGGTCATTCAGAAGATCAGGGCAAGGATGCAGACAGCTTAGAGAAGACAGAAAGTTACACCGATTGGTTGTCTTTCTTTCTCTGCAAATTCCCTTAGCCGCTGACCATTGCGACGCCGCTGCCTTCACCGTCATTCATGAGCCACAGTCCGACATCGTGCGTAGGGACACAGTCACCGATTGTCACCACCTCTGTTTGCTTGATTGTCTGCTCATCGTTTCTGGTCGTCGCAGCTATTCTGTCGTTTTTGGACCAACCTCTTTATCTTCGTCATGCCGCCGGGCGTCGTTTTGGTCGTCGTTTCCATCCACCACCGGAAGCCACCATTTGCTCGCTAGAAAGACCACCAGAGGTTTAATGTATATTTCGAGATTCACTAAAGGTTTTGTGTTTCCTATGAGAATCACTAGAGGTTATGTGTATCATTCGGGATCTACCAGAGGTTTTGTGTTTCCTACGAAATTCACTAGAGACATGTGTTTCCCATCAAGATTCACTAGAGGCCCCGAGCCCTACATCGACCCTTGGCCATTTGTACCCAAGGCCTCGACACTTACTCGTCACACTGACCCTTGGCCATTTGTACCCAAAGCCTCAATGCTTGTCTTAGTACCCAAGGCCTCGACGCTTACCCTAAACTCGGTTGCCATACCGATCCTACATAAGCGTTATCGACCTCCGACCTTCGACTGCTGGTCAGAGAAAGCTACGGCAACTGAGCAATGGATTGCAGAGCTGGAGTCATTGTTTGAATACCTGAATTGTGAGGACCATTTTAAGGTCAGAGGAGTAGTTTTCATGCTTCGAGACGAGGCGCGAATGTGGTGGAGATCCATTGAAGCCTCAGAAGATCATGCCGAAGGACCCATGACTTGGGCAAGGTTTAAGGACCTCCTATACGACTACTATTTTCCCGACAAAGTGAAGGACGACAAGGAAATAGAGTTCCTGCATCTAACCGAGTTGTCTTGTTTTGCACCCGACCTGGTGAGTACGTCAGAGAGGAGGATTAAAAGGTTCATTAGGGGCTTGCGCGAGGAAATTAGAGGTGCGGTCGCCTTAAAGGAGCCAATGACTTTTGCTGCAGCACTTAAGGCGGCACTGATCATGGACAAAAATATGGCCAAGAAACCTCAGGTGACACACTCACGTTGGGAGGTTGGCGCCTCATCTAGATTTAAAAGAAAGTCTCCCCCAGCTTCGTCAGATCAAACTTCCAAGGCCCATCGTCTGGCCTCGGGGCAAGCTACCACCCTCCCATTGTGCGGCTCATGCAACAAGCGTCACTTGGAGCAGTGCTGGCTAGGCCAGAGCATTTGCTTTAAGTGTGGAAAGGAAGGTCACTTTGCAAGGATGTGCCAAAATAAAAGGGAGGCCAGCGCAGACAAGCCGACCTCGAAGGCCTTACCAGAAGCTACTTAA

Protein sequence

MAVGEVTSQLSQLTIQLTLRQKIIDTQQGDPYFVEKFCEVQSEQDREFLVYSNNGLYYQRRLCVPANGNVKNELLAEAHSSPFTIHPEGTKMYQDLKRYYWWHNMKKEVVGLLMRSFRRSGQGCRQLREDRKLHRLVVFLSLQIPLAADHCDAAAFTVIHEPQSDIVRRDTVTDCHHLCLLDCLLIVSGRRSYSVVFGPTSLSSSCRRASFWSSFPSTTGSHHLLARKTTRGLMYISRFTKGFVFPMRITRGYVYHSGSTRGFVFPTKFTRDMCFPSRFTRGPEPYIDPWPFVPKASTLTRHTDPWPFVPKASMLVLVPKASTLTLNSVAIPILHKRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEASEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHLTELSCFAPDLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEVGASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEGHFARMCQNKREASADKPTSKALPEAT

Homology

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BLAST of Clc09G16930 vs. NCBI nr
Match: XP_022156326.1 (uncharacterized protein LOC111023247 [Momordica charantia])

HSP 1 Score: 253.8 bits (647), Expect = 3.5e-63
Identity = 128/246 (52.03%), Postives = 163/246 (66.26%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           KRY PPTFD  SE+ATA E+WI ELE+L+ YL CED FKV+G VFMLR EA  WW S+ A
Sbjct: 45  KRYGPPTFDGESERATAVEEWIRELEALYAYLGCEDQFKVKGAVFMLRGEALNWWDSVAA 104

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +ED+A  P+ WARFK+LLYDYY+P+ VKD KE EFLHL              TELS FA 
Sbjct: 105 AEDYANVPIPWARFKNLLYDYYYPETVKDMKEAEFLHLVQGTLSVAQYERKFTELSRFAL 164

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
           +L+ T   +IKRF++GLR+ IRG V L+ P T+A A++ AL+MDK+++ K        EV
Sbjct: 165 ELIPTEALKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALVMDKDVSNKASPLP---EV 224

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 568
           G+SS  KRK P   +D   +A +  +      P+C +C KRH  QCW G   CF+CG+EG
Sbjct: 225 GSSSGVKRKFPSTYADLVLRAPQRQAQHQGMPPVCPTCQKRHTGQCWTGSKGCFRCGREG 284

[Close]

BLAST of Clc09G16930 vs. NCBI nr
Match: XP_022156328.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia])

HSP 1 Score: 243.4 bits (620), Expect = 4.8e-60
Identity = 128/270 (47.41%), Postives = 169/270 (62.59%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           K + PP F+  SE+ TA E+W+ ELE+L+ YL C D FKVRG VFMLR EA  WW S+ A
Sbjct: 96  KCFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAVNWWESVAA 155

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +EDHA  P+TWARFKDLLY+YYFP   +++K +EFL L              TELS F  
Sbjct: 156 AEDHANVPVTWARFKDLLYEYYFPVIARNEKRVEFLRLTQGSLTVAQYERKFTELSRFGT 215

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
             V T + +I +FI GLR EI+G + LKEP T+AAA++ AL+MDK + ++PQ   S+  +
Sbjct: 216 QYVPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCL-EEPQ---SQQVI 275

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 575
           G++S  KRK    S+ Q+S+ H+  + + T  P+C SC K H   CWLG+ ICFKC KEG
Sbjct: 276 GSNSGVKRKFASFSASQSSRGHQHHAQRQTAPPVCPSCKKNHARPCWLGKKICFKCQKEG 335

Query: 576 HFARMC----QNKREASADKPTSKALPEAT 588
           HF R C     N +  S   PT+ A    T
Sbjct: 336 HFTRECLMTGSNTQALSQKTPTATATQGGT 361

[Close]

BLAST of Clc09G16930 vs. NCBI nr
Match: XP_022155925.1 (uncharacterized protein LOC111022925 [Momordica charantia])

HSP 1 Score: 243.0 bits (619), Expect = 6.3e-60
Identity = 123/246 (50.00%), Postives = 161/246 (65.45%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           KR+ PP F+  SE+ TA E+W+ ELE+L+ YL C D FKVRG VFML+ EA  WW S+ A
Sbjct: 77  KRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLQGEAVNWWESVAA 136

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +EDHA  P+TWARFKDLLY+YYFP  V+++K  EFL L              TELS F  
Sbjct: 137 AEDHANVPVTWARFKDLLYEYYFPVTVRNEKRAEFLRLTQESLIVAQYERKFTELSRFGM 196

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
             + T + +I +FI GLR EI+G + LKEP T+AAA++ AL+MDK + ++PQ   S+  +
Sbjct: 197 QYIPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCL-EEPQ---SQQVI 256

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 568
           G+SS  KRK    SS Q S+ H+    + TT P C SC K H   CW+G+ IC++C KEG
Sbjct: 257 GSSSGVKRKFASFSSSQPSRGHQHNGQRQTTPPACPSCKKNHAGPCWVGKRICYRCQKEG 316

[Close]

BLAST of Clc09G16930 vs. NCBI nr
Match: XP_022155000.1 (uncharacterized protein LOC111022144 [Momordica charantia])

HSP 1 Score: 242.3 bits (617), Expect = 1.1e-59
Identity = 126/246 (51.22%), Postives = 160/246 (65.04%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           KRY PPTFD  SE+ATA E+WI ELE+ + YL CED FKV+G VFMLR EA  WW SI A
Sbjct: 18  KRYGPPTFDGESERATAAEEWIRELEAFYAYLGCEDQFKVKGAVFMLRGEALNWWDSIAA 77

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +EDHA   + WARFKDLLYDYY+ + VKD KE EFLHL              TELS FA 
Sbjct: 78  AEDHANVTIPWARFKDLLYDYYYLETVKDMKEAEFLHLVQGTLSVAQYERKFTELSRFAL 137

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
           +L+  +  +IKRF++GL + IRG V L+ P ++A A++ ALIMDK+++ K     S  EV
Sbjct: 138 ELILNAAMKIKRFVKGLSKGIRGPVDLQRPASYAEAVRGALIMDKDVSNK---APSLPEV 197

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 568
           G+SS  KRK  P  +D + +A +  +      P+C +C KRH  QCW G   CF+CG+E 
Sbjct: 198 GSSSGVKRKFHPTYADPSLRAPQHQAQHRGMPPVCPTCQKRHAGQCWTGSKGCFRCGRER 257

[Close]

BLAST of Clc09G16930 vs. NCBI nr
Match: XP_022158750.1 (uncharacterized protein LOC111025215 [Momordica charantia])

HSP 1 Score: 233.4 bits (594), Expect = 5.0e-57
Identity = 118/235 (50.21%), Postives = 155/235 (65.96%), Query Frame = 0


Query: 347 SEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEASEDHAEGPMTW 406
           SE+ TA E+W+ ELE+L+ YL C D FKVRG VFMLR EA  WW S+ A+EDHA  P+TW
Sbjct: 90  SERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAVNWWESVAAAEDHANVPVTW 149

Query: 407 ARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAPDLVSTSERRIK 466
           ARFKDLLY+YYFP  V+++K +EFL L              TELS F    + T + +I 
Sbjct: 150 ARFKDLLYEYYFPVTVRNEKRVEFLRLTQGSLTVAEYERKFTELSRFGMQYIPTKQLKID 209

Query: 467 RFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEVGASSRFKRKSP 526
           +FI GLR EI+G + LKEP T+AAA++ AL+MDK + ++PQ   S+  +G+SS  KRK  
Sbjct: 210 KFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCL-EEPQ---SQQVIGSSSGVKRKFA 269

Query: 527 PASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEGHFARMC 568
             SS Q S+ H+    + T  P+C SC K H   CW+G+ IC++C KEGHFAR C
Sbjct: 270 SFSSSQPSRRHQHHVQRQTAPPVCPSCKKSHAGPCWVGKRICYRCQKEGHFAREC 320

[Close]

BLAST of Clc09G16930 vs. ExPASy TrEMBL
Match: A0A6J1DUM2 (uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023247 PE=4 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 1.7e-63
Identity = 128/246 (52.03%), Postives = 163/246 (66.26%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           KRY PPTFD  SE+ATA E+WI ELE+L+ YL CED FKV+G VFMLR EA  WW S+ A
Sbjct: 45  KRYGPPTFDGESERATAVEEWIRELEALYAYLGCEDQFKVKGAVFMLRGEALNWWDSVAA 104

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +ED+A  P+ WARFK+LLYDYY+P+ VKD KE EFLHL              TELS FA 
Sbjct: 105 AEDYANVPIPWARFKNLLYDYYYPETVKDMKEAEFLHLVQGTLSVAQYERKFTELSRFAL 164

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
           +L+ T   +IKRF++GLR+ IRG V L+ P T+A A++ AL+MDK+++ K        EV
Sbjct: 165 ELIPTEALKIKRFVKGLRKGIRGPVDLQRPTTYAEAVRGALVMDKDVSNKASPLP---EV 224

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 568
           G+SS  KRK P   +D   +A +  +      P+C +C KRH  QCW G   CF+CG+EG
Sbjct: 225 GSSSGVKRKFPSTYADLVLRAPQRQAQHQGMPPVCPTCQKRHTGQCWTGSKGCFRCGREG 284

[Close]

BLAST of Clc09G16930 vs. ExPASy TrEMBL
Match: A0A6J1DQB9 (Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1)

HSP 1 Score: 243.4 bits (620), Expect = 2.3e-60
Identity = 128/270 (47.41%), Postives = 169/270 (62.59%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           K + PP F+  SE+ TA E+W+ ELE+L+ YL C D FKVRG VFMLR EA  WW S+ A
Sbjct: 96  KCFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAVNWWESVAA 155

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +EDHA  P+TWARFKDLLY+YYFP   +++K +EFL L              TELS F  
Sbjct: 156 AEDHANVPVTWARFKDLLYEYYFPVIARNEKRVEFLRLTQGSLTVAQYERKFTELSRFGT 215

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
             V T + +I +FI GLR EI+G + LKEP T+AAA++ AL+MDK + ++PQ   S+  +
Sbjct: 216 QYVPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCL-EEPQ---SQQVI 275

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 575
           G++S  KRK    S+ Q+S+ H+  + + T  P+C SC K H   CWLG+ ICFKC KEG
Sbjct: 276 GSNSGVKRKFASFSASQSSRGHQHHAQRQTAPPVCPSCKKNHARPCWLGKKICFKCQKEG 335

Query: 576 HFARMC----QNKREASADKPTSKALPEAT 588
           HF R C     N +  S   PT+ A    T
Sbjct: 336 HFTRECLMTGSNTQALSQKTPTATATQGGT 361

[Close]

BLAST of Clc09G16930 vs. ExPASy TrEMBL
Match: A0A6J1DNV8 (uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022925 PE=4 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 3.0e-60
Identity = 123/246 (50.00%), Postives = 161/246 (65.45%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           KR+ PP F+  SE+ TA E+W+ ELE+L+ YL C D FKVRG VFML+ EA  WW S+ A
Sbjct: 77  KRFGPPVFNGVSERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLQGEAVNWWESVAA 136

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +EDHA  P+TWARFKDLLY+YYFP  V+++K  EFL L              TELS F  
Sbjct: 137 AEDHANVPVTWARFKDLLYEYYFPVTVRNEKRAEFLRLTQESLIVAQYERKFTELSRFGM 196

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
             + T + +I +FI GLR EI+G + LKEP T+AAA++ AL+MDK + ++PQ   S+  +
Sbjct: 197 QYIPTEQLKIDKFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCL-EEPQ---SQQVI 256

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 568
           G+SS  KRK    SS Q S+ H+    + TT P C SC K H   CW+G+ IC++C KEG
Sbjct: 257 GSSSGVKRKFASFSSSQPSRGHQHNGQRQTTPPACPSCKKNHAGPCWVGKRICYRCQKEG 316

[Close]

BLAST of Clc09G16930 vs. ExPASy TrEMBL
Match: A0A6J1DL73 (uncharacterized protein LOC111022144 OS=Momordica charantia OX=3673 GN=LOC111022144 PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.2e-60
Identity = 126/246 (51.22%), Postives = 160/246 (65.04%), Query Frame = 0


Query: 336 KRYRPPTFDCWSEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEA 395
           KRY PPTFD  SE+ATA E+WI ELE+ + YL CED FKV+G VFMLR EA  WW SI A
Sbjct: 18  KRYGPPTFDGESERATAAEEWIRELEAFYAYLGCEDQFKVKGAVFMLRGEALNWWDSIAA 77

Query: 396 SEDHAEGPMTWARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAP 455
           +EDHA   + WARFKDLLYDYY+ + VKD KE EFLHL              TELS FA 
Sbjct: 78  AEDHANVTIPWARFKDLLYDYYYLETVKDMKEAEFLHLVQGTLSVAQYERKFTELSRFAL 137

Query: 456 DLVSTSERRIKRFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEV 515
           +L+  +  +IKRF++GL + IRG V L+ P ++A A++ ALIMDK+++ K     S  EV
Sbjct: 138 ELILNAAMKIKRFVKGLSKGIRGPVDLQRPASYAEAVRGALIMDKDVSNK---APSLPEV 197

Query: 516 GASSRFKRKSPPASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEG 568
           G+SS  KRK  P  +D + +A +  +      P+C +C KRH  QCW G   CF+CG+E 
Sbjct: 198 GSSSGVKRKFHPTYADPSLRAPQHQAQHRGMPPVCPTCQKRHAGQCWTGSKGCFRCGRER 257

[Close]

BLAST of Clc09G16930 vs. ExPASy TrEMBL
Match: A0A6J1DWP4 (uncharacterized protein LOC111025215 OS=Momordica charantia OX=3673 GN=LOC111025215 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.4e-57
Identity = 118/235 (50.21%), Postives = 155/235 (65.96%), Query Frame = 0


Query: 347 SEKATATEQWIAELESLFEYLNCEDHFKVRGVVFMLRDEARMWWRSIEASEDHAEGPMTW 406
           SE+ TA E+W+ ELE+L+ YL C D FKVRG VFMLR EA  WW S+ A+EDHA  P+TW
Sbjct: 90  SERPTAAEEWVRELEALYVYLGCSDDFKVRGAVFMLRGEAVNWWESVAAAEDHANVPVTW 149

Query: 407 ARFKDLLYDYYFPDKVKDDKEIEFLHL--------------TELSCFAPDLVSTSERRIK 466
           ARFKDLLY+YYFP  V+++K +EFL L              TELS F    + T + +I 
Sbjct: 150 ARFKDLLYEYYFPVTVRNEKRVEFLRLTQGSLTVAEYERKFTELSRFGMQYIPTKQLKID 209

Query: 467 RFIRGLREEIRGAVALKEPMTFAAALKAALIMDKNMAKKPQVTHSRWEVGASSRFKRKSP 526
           +FI GLR EI+G + LKEP T+AAA++ AL+MDK + ++PQ   S+  +G+SS  KRK  
Sbjct: 210 KFIDGLRREIKGLLVLKEPTTYAAAVRCALVMDKCL-EEPQ---SQQVIGSSSGVKRKFA 269

Query: 527 PASSDQTSKAHRLASGQATTLPLCGSCNKRHLEQCWLGQSICFKCGKEGHFARMC 568
             SS Q S+ H+    + T  P+C SC K H   CW+G+ IC++C KEGHFAR C
Sbjct: 270 SFSSSQPSRRHQHHVQRQTAPPVCPSCKKSHAGPCWVGKRICYRCQKEGHFAREC 320

The following BLAST results are available for this feature:

BLAST of Clc09G16930 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022156326.1	3.5e-63	52.03	uncharacterized protein LOC111023247 [Momordica charantia]	[more]
XP_022156328.1	4.8e-60	47.41	LOW QUALITY PROTEIN: uncharacterized protein LOC111023249 [Momordica charantia]	[more]
XP_022155925.1	6.3e-60	50.00	uncharacterized protein LOC111022925 [Momordica charantia]	[more]
XP_022155000.1	1.1e-59	51.22	uncharacterized protein LOC111022144 [Momordica charantia]	[more]
XP_022158750.1	5.0e-57	50.21	uncharacterized protein LOC111025215 [Momordica charantia]	[more]

BLAST of Clc09G16930 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G16930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DUM2	1.7e-63	52.03	uncharacterized protein LOC111023247 OS=Momordica charantia OX=3673 GN=LOC111023...	[more]
A0A6J1DQB9	2.3e-60	47.41	Reverse transcriptase OS=Momordica charantia OX=3673 GN=LOC111023249 PE=4 SV=1	[more]
A0A6J1DNV8	3.0e-60	50.00	uncharacterized protein LOC111022925 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DL73	5.2e-60	51.22	uncharacterized protein LOC111022144 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DWP4	2.4e-57	50.21	uncharacterized protein LOC111025215 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]

BLAST of Clc09G16930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 553..569 e-value: 1.1E-4 score: 31.6
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 553..568 e-value: 5.2E-6 score: 26.3
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 554..569 score: 10.361479
IPR005162	Retrotransposon gag domain	PFAM	PF03732	Retrotrans_gag	coord: 378..459 e-value: 7.9E-7 score: 29.3
IPR041588	Integrase zinc-binding domain	PFAM	PF17921	Integrase_H2C2	coord: 70..109 e-value: 1.5E-7 score: 31.4
None	No IPR available	GENE3D	4.10.60.10		coord: 550..585 e-value: 2.5E-7 score: 32.9
None	No IPR available	GENE3D	1.10.340.70		coord: 34..126 e-value: 4.3E-11 score: 44.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 509..524
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 494..524
None	No IPR available	PANTHER	PTHR34482:SF4	POLYMERASES SUPERFAMILY PROTEIN, PUTATIVE ISOFORM 1-RELATED	coord: 347..576
None	No IPR available	PANTHER	PTHR34482	DNA DAMAGE-INDUCIBLE PROTEIN 1-LIKE	coord: 347..576
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 549..573

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G16930.1	Clc09G16930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding