Clc09G16530 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G16530
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 26102832 .. 26103253 (+)
RNA-Seq Expression	Clc09G16530
Synteny	Clc09G16530

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCAAACCCAAGTTAAGTATAAATATATATATTATAAGAGTTTTAAGAAAAATAAAAGATGAACATCAGTTTTGATTTTTGAAGAAAGTCATGCACAGACCCACACCTTCAAAATCTCTTTATCGTTCGCAAGCCTCTCTCTCCTCCCACGCCAGCAACCCACCTCATCGTCGACCGACCCAACTCGTACCACCGATCCAGTCGCGCCCTCCGTCCGCCAGTCCTCGTTTGAGCACCAACAGTCCATATCACCGCATCCGCCACTGCCCTTCCATCAAAGTGAGGTGGCACAAGTTTTCATCAATATGATGATGAGGACCTCTTTAGGAAGTGTTCACATCATGGATATTCAAACTGGTTACAAATCCAGTTGTTATTAATACCACGAAATCTAACTTGAATGCTGCTACAACAGGGTTCAT

mRNA sequence

GCCAAACCCAAGTTAAGTATAAATATATATATTATAAGAGTTTTAAGAAAAATAAAAGATGAACATCAGTTTTGATTTTTGAAGAAAGTCATGCACAGACCCACACCTTCAAAATCTCTTTATCGTTCGCAAGCCTCTCTCTCCTCCCACGCCAGCAACCCACCTCATCGTCGACCGACCCAACTCGTACCACCGATCCAGTCGCGCCCTCCGTCCGCCAGTCCTCGTTTGAGCACCAACAGTCCATATCACCGCATCCGCCACTGCCCTTCCATCAAAGTGAGGTGGCACAAGTTTTCATCAATATGATGATGAGGACCTCTTTAGGAAGTGTTCACATCATGGATATTCAAACTGGTTACAAATCCAGTTGTTATTAATACCACGAAATCTAACTTGAATGCTGCTACAACAGGGTTCAT

Coding sequence (CDS)

ATGCACAGACCCACACCTTCAAAATCTCTTTATCGTTCGCAAGCCTCTCTCTCCTCCCACGCCAGCAACCCACCTCATCGTCGACCGACCCAACTCGTACCACCGATCCAGTCGCGCCCTCCGTCCGCCAGTCCTCGTTTGAGCACCAACAGTCCATATCACCGCATCCGCCACTGCCCTTCCATCAAAGTGAGGTGGCACAAGTTTTCATCAATATGA

Protein sequence

MHRPTPSKSLYRSQASLSSHASNPPHRRPTQLVPPIQSRPPSASPRLSTNSPYHRIRHCPSIKVRWHKFSSI

Homology

The following BLAST results are available for this feature:

BLAST of Clc09G16530 vs.


Match Name	E-value	Identity	Description

BLAST of Clc09G16530 vs.


Match Name	E-value	Identity	Description

BLAST of Clc09G16530 vs.


Match Name	E-value	Identity	Description

BLAST of Clc09G16530 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G16530.1	Clc09G16530.1	mRNA