Clc09G15850 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G15850
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 23602264 .. 23603064 (+)
RNA-Seq ExpressionClc09G15850
SyntenyClc09G15850
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGTGTTTGTATAGCTTTATAAGCAATGGTATATGTTTGCGTCCGTCTATTACTTACCCTTCCTCTCACTTTCAACGGACGTGCTCTTTGTATAATGGCGAAATCAATTTCCCCCTCCAAAAATCGAACATTCCAGACCTCCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTATTCATCTTAGCGAAGACTCCGATTACCACGACCACCTTACCGCCTCCCCCACCACTTCCAGCGACCACAAATCCCTCCCATCCGCCACCAACGCCGCTCCAATGGAAGACGACGGGATCCACACCAGCCGCCGCCTAGCCACTGCGCCGCCTACAACCTCTCTGATTGAACAAATCTTCGAAGAAATCGGAGACGGTTCGAATCGGAGAGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTCAAATGAATTGAAGAGGAATCGCGAAATATGTATTCTCTCTAACTTGATCTTGTTCGCTAATTTTGCTGAATCCAAACCTAACTCGGTGTTTGTGTGTTTGTGCATATCTGTATGTGTACACCTATGAATCGATTTTAGTATTATTCTGTCTTTTTGCGCCGAATTTAACCCTCTATTTTGCCTTTTTCGTTGTGTTTTCTGGAAGATATGAAGTGTGTGTGTATATATATATATATATAGTGTGTGTGTGTGTGTGTATGTGATCATTGCTTTGCTTCGATTTTTTGAAGTGTTTCTTAAGAAGAACCGCAGTAGTAGGTGTTAGTTCTTGAAGAAAGGGGGATTAAT

mRNA sequence

CGTGTTTGTATAGCTTTATAAGCAATGGTATATGTTTGCGTCCGTCTATTACTTACCCTTCCTCTCACTTTCAACGGACGTGCTCTTTGTATAATGGCGAAATCAATTTCCCCCTCCAAAAATCGAACATTCCAGACCTCCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTATTCATCTTAGCGAAGACTCCGATTACCACGACCACCTTACCGCCTCCCCCACCACTTCCAGCGACCACAAATCCCTCCCATCCGCCACCAACGCCGCTCCAATGGAAGACGACGGGATCCACACCAGCCGCCGCCTAGCCACTGCGCCGCCTACAACCTCTCTGATTGAACAAATCTTCGAAGAAATCGGAGACGGTTCGAATCGGAGAGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTCAAATGAATTGAAGAGGAATCGCGAAATATGTATTCTCTCTAACTTGATCTTGTTCGCTAATTTTGCTGAATCCAAACCTAACTCGGTGTTTGTGTGTTTGTGCATATCTGTATGTGTACACCTATGAATCGATTTTAGTATTATTCTGTCTTTTTGCGCCGAATTTAACCCTCTATTTTGCCTTTTTCGTTGTGTTTTCTGGAAGATATGAAGTGTGTGTGTATATATATATATATATAGTGTGTGTGTGTGTGTGTATGTGATCATTGCTTTGCTTCGATTTTTTGAAGTGTTTCTTAAGAAGAACCGCAGTAGTAGGTGTTAGTTCTTGAAGAAAGGGGGATTAAT

Coding sequence (CDS)

ATGGTATATGTTTGCGTCCGTCTATTACTTACCCTTCCTCTCACTTTCAACGGACGTGCTCTTTGTATAATGGCGAAATCAATTTCCCCCTCCAAAAATCGAACATTCCAGACCTCCTTCTCCGATTCCGAAATCGACGTCGCAATTCAGCTTATTCATCTTAGCGAAGACTCCGATTACCACGACCACCTTACCGCCTCCCCCACCACTTCCAGCGACCACAAATCCCTCCCATCCGCCACCAACGCCGCTCCAATGGAAGACGACGGGATCCACACCAGCCGCCGCCTAGCCACTGCGCCGCCTACAACCTCTCTGATTGAACAAATCTTCGAAGAAATCGGAGACGGTTCGAATCGGAGAGGGAGGAAGCGCCGGTCGCGTTCGGTTTACGAGATTTACAAATTGACGAAGCCTGTTATCTCCGTCAAATGA

Protein sequence

MVYVCVRLLLTLPLTFNGRALCIMAKSISPSKNRTFQTSFSDSEIDVAIQLIHLSEDSDYHDHLTASPTTSSDHKSLPSATNAAPMEDDGIHTSRRLATAPPTTSLIEQIFEEIGDGSNRRGRKRRSRSVYEIYKLTKPVISVK
Homology
[Close]
BLAST of Clc09G15850 vs. NCBI nr
Match: KAG6571728.1 (hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 156.8 bits (395), Expect = 1.4e-34
Identity = 95/126 (75.40%), Postives = 101/126 (80.16%), Query Frame = 0 

Query: 24  MAKSISPSKNRTFQTS-FSDSEIDVAIQLIHLSEDSDYHDHLTASPTTSSDHKSL---PS 83
           MAKSIS  KNR F+TS FSDSEIDVAIQL+HLSEDSDY  +  AS T+ SD KS+    S
Sbjct: 1   MAKSISSCKNRRFRTSVFSDSEIDVAIQLLHLSEDSDYLANTIASSTSCSDDKSVASATS 60

Query: 84  ATNAAPMEDDGIH-TSRRLATAPPTTSLIEQIFEEIGDGSNRRGRKRRSRSVYEIYKLTK 143
           ATNAA MEDDG H +SRR AT  PTTSLIE IFEEIGD SNRR RKRRSRSVYEIYKLTK
Sbjct: 61  ATNAAGMEDDGSHSSSRRGATLVPTTSLIEDIFEEIGDSSNRRRRKRRSRSVYEIYKLTK 120

Query: 144 PVISVK 145
           P ISVK
Sbjct: 121 PFISVK 126

[Close]
BLAST of Clc09G15850 vs. NCBI nr
Match: KAG6588821.1 (hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 148.3 bits (373), Expect = 5.1e-32
Identity = 88/124 (70.97%), Postives = 96/124 (77.42%), Query Frame = 0 

Query: 24  MAKSISPSKNRTFQTS-FSDSEIDVAIQLIHLSEDSDYHDHLTASPTTSSDHKSLPSA-- 83
           MA+S+S S+NR FQTS FSDSEIDVAIQLIHLSEDSDYHD L AS T+ SD KSL SA  
Sbjct: 1   MAESVSTSRNRRFQTSIFSDSEIDVAIQLIHLSEDSDYHDELPASSTSCSDDKSLASASN 60

Query: 84  TNAAPMEDDGIHTSRRLATAPPTTSLIEQIFEEIGDGSNRRGRKRRSRSVYEIYKLTKPV 143
           +NA  MEDDG +  RR     P    IE I+EEIGDG+NRR RKRRSRSVYEIYKLTKPV
Sbjct: 61  SNADEMEDDGRNNGRRGTKTTP----IEDIYEEIGDGANRRRRKRRSRSVYEIYKLTKPV 120

Query: 144 ISVK 145
           I VK
Sbjct: 121 IFVK 120

The following BLAST results are available for this feature:
BLAST of Clc09G15850 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6571728.11.4e-3475.40hypothetical protein SDJN03_28456, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588821.15.1e-3270.97hypothetical protein SDJN03_17386, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc09G15850 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G15850 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G15850 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 62..88
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G15850.1Clc09G15850.1mRNA