Clc09G15370 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G15370
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Gag/pol protein
Location	ClcChr09: 20850695 .. 20851018 (-)
RNA-Seq Expression	Clc09G15370
Synteny	Clc09G15370

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATGCATCTGTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCCATCGGAGAAATTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAGGGTCACTAG

mRNA sequence

ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATGCATCTGTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCCATCGGAGAAATTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAGGGTCACTAG

Coding sequence (CDS)

ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATGCATCTGTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCCATCGGAGAAATTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAGGGTCACTAG

Protein sequence

MVLEKGCDNVAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH

Homology

[Close]

BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10   VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
            VA C+A KEAVWLKKFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH
Sbjct: 1126 VAACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 1185

Query: 70   PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
             I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 1186 LIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 1223

[Close]

BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0053385.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 155.2 bits (391), Expect = 3.1e-34
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
           VA C A KEA+WL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKESRSHK  +HIERKYH
Sbjct: 305 VAACDAAKEAIWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKESRSHKRGKHIERKYH 364

Query: 70  PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
            I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 365 LIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 402

[Close]

BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
           VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH
Sbjct: 191 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 250

Query: 70  PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
            I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 251 LIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 288

[Close]

BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0035986.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30417.1 gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 10  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
           VA C+ATKEAVWLKKFLTDL+VVPNMH+ ITLYCDN+G +ANS+E RSHK  +HIERKYH
Sbjct: 61  VAACEATKEAVWLKKFLTDLEVVPNMHMLITLYCDNSGVVANSREPRSHKRGKHIERKYH 120

Query: 70  PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
            I EIV +GD+TV +I SE N+ DPFTKALTAKVF+ H
Sbjct: 121 LIREIVHRGDVTVTKILSEQNMADPFTKALTAKVFESH 158

[Close]

BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0058279.1 (gag/pol protein [Cucumis melo var. makuwa])

HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
           VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH
Sbjct: 118 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 177

Query: 70  PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
            I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 178 LIWEIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 215

[Close]

BLAST of Clc09G15370 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 59.3 bits (142), Expect = 3.1e-08
Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 0


Query: 10   VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
            +A+ +A +EA+WLK  LT + +   +   I +Y DN G I+ +     HK  +HI+ KYH
Sbjct: 1299 MALFEAVREALWLKFLLTSINI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYH 1358

Query: 70   PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVF 105
               E VQ   + ++ I +E+ + D FTK L A  F
Sbjct: 1359 FAREQVQNNVICLEYIPTENQLADIFTKPLPAARF 1391

[Close]

BLAST of Clc09G15370 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08
Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 0


Query: 10   VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
            +A  +  KE +WLK+FL +L +    ++   +YCD+  AI  SK S  H   +HI+ +YH
Sbjct: 1225 IAATETGKEMIWLKRFLQELGLHQKEYV---VYCDSQSAIDLSKNSMYHARTKHIDVRYH 1284

Query: 70   PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFK 106
             I E+V    + V +I++  N  D  TK +    F+
Sbjct: 1285 WIREMVDDESLKVLKISTNENPADMLTKVVPRNKFE 1317

[Close]

BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34
Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10   VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
            VA C+A KEAVWLKKFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH
Sbjct: 1126 VAACEAAKEAVWLKKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 1185

Query: 70   PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
             I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 1186 LIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 1223

[Close]

BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7UI63 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00480 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
           VA C A KEA+WL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKESRSHK  +HIERKYH
Sbjct: 305 VAACDAAKEAIWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKESRSHKRGKHIERKYH 364

Query: 70  PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
            I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 365 LIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 402

[Close]

BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10   VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
            VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH
Sbjct: 1126 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 1185

Query: 70   PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
             I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 1186 LIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 1223

[Close]

BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7T187 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00190 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 0


Query: 10  VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
           VA C+ATKEAVWLKKFLTDL+VVPNMH+ ITLYCDN+G +ANS+E RSHK  +HIERKYH
Sbjct: 61  VAACEATKEAVWLKKFLTDLEVVPNMHMLITLYCDNSGVVANSREPRSHKRGKHIERKYH 120

Query: 70  PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
            I EIV +GD+TV +I SE N+ DPFTKALTAKVF+ H
Sbjct: 121 LIREIVHRGDVTVTKILSEQNMADPFTKALTAKVFESH 158

[Close]

BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34
Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0


Query: 10   VAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYH 69
            VA C+A KEAVWL+KFL DL+VVPNM+L ITLYCDN+GA+ANSKE RSHK  +HIERKYH
Sbjct: 1000 VAACEAAKEAVWLRKFLHDLEVVPNMNLPITLYCDNSGAVANSKEPRSHKRGKHIERKYH 1059

Query: 70   PIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH 108
             I EIVQ+GD+ V +IASEHNI DPFTK LTAKVF+GH
Sbjct: 1060 LIREIVQRGDVIVTKIASEHNIADPFTKTLTAKVFEGH 1097

The following BLAST results are available for this feature:

BLAST of Clc09G15370 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0035907.1	2.4e-34	76.53	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0053385.1	3.1e-34	75.51	putative gag-pol polyprotein [Cucumis melo var. makuwa]	[more]
KAA0042496.1	5.3e-34	75.51	gag/pol protein [Cucumis melo var. makuwa]	[more]
KAA0035986.1	5.3e-34	73.47	gag/pol protein [Cucumis melo var. makuwa] >TYK30417.1 gag/pol protein [Cucumis ...	[more]
KAA0058279.1	5.3e-34	75.51	gag/pol protein [Cucumis melo var. makuwa]	[more]

BLAST of Clc09G15370 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	3.1e-08	35.79	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
P10978	4.0e-08	33.33	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of Clc09G15370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7T2V9	1.2e-34	76.53	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760...	[more]
A0A5A7UI63	1.5e-34	75.51	Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca...	[more]
A0A5A7TZD0	2.6e-34	75.51	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G000...	[more]
A0A5A7T187	2.6e-34	73.47	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G0019...	[more]
A0A5A7UYE8	2.6e-34	75.51	Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G0015...	[more]

BLAST of Clc09G15370 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	CDD	cd09272	RNase_HI_RT_Ty1	coord: 10..102 e-value: 1.52633E-29 score: 101.006

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G15370.1	Clc09G15370.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding