Clc09G15370 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATGCATCTGTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCCATCGGAGAAATTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAGGGTCACTAG ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATGCATCTGTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCCATCGGAGAAATTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAGGGTCACTAG ATGGTCTTAGAAAAAGGGTGTGACAATGTAGCTGTATGTAAAGCAACAAAAGAAGCAGTGTGGCTCAAGAAGTTCTTAACGGATCTGAAAGTTGTTCCAAATATGCATCTGTTTATCACTCTTTATTGTGATAATAATGGTGCAATTGCAAACTCCAAAGAATCTAGAAGTCATAAGCACGACCAACACATTGAGCGAAAATACCATCCCATCGGAGAAATTGTGCAGAAAGGTGACATGACTGTTCAGCAGATCGCGTCAGAGCACAACATTGATGATCCATTTACAAAGGCTCTCACGGCTAAAGTGTTTAAGGGTCACTAG MVLEKGCDNVAVCKATKEAVWLKKFLTDLKVVPNMHLFITLYCDNNGAIANSKESRSHKHDQHIERKYHPIGEIVQKGDMTVQQIASEHNIDDPFTKALTAKVFKGH Homology
BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0035907.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 155.6 bits (392), Expect = 2.4e-34 Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0053385.1 (putative gag-pol polyprotein [Cucumis melo var. makuwa]) HSP 1 Score: 155.2 bits (391), Expect = 3.1e-34 Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0042496.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34 Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0035986.1 (gag/pol protein [Cucumis melo var. makuwa] >TYK30417.1 gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34 Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 0
BLAST of Clc09G15370 vs. NCBI nr
Match: KAA0058279.1 (gag/pol protein [Cucumis melo var. makuwa]) HSP 1 Score: 154.5 bits (389), Expect = 5.3e-34 Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of Clc09G15370 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3) HSP 1 Score: 59.3 bits (142), Expect = 3.1e-08 Identity = 34/95 (35.79%), Postives = 53/95 (55.79%), Query Frame = 0
BLAST of Clc09G15370 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1) HSP 1 Score: 58.9 bits (141), Expect = 4.0e-08 Identity = 32/96 (33.33%), Postives = 52/96 (54.17%), Query Frame = 0
BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7T2V9 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold56G00760 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 1.2e-34 Identity = 75/98 (76.53%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7UI63 (Putative gag-pol polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold428G00480 PE=4 SV=1) HSP 1 Score: 155.2 bits (391), Expect = 1.5e-34 Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7TZD0 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00090 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34 Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0
BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7T187 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold349G00190 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34 Identity = 72/98 (73.47%), Postives = 84/98 (85.71%), Query Frame = 0
BLAST of Clc09G15370 vs. ExPASy TrEMBL
Match: A0A5A7UYE8 (Gag/pol protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G001570 PE=4 SV=1) HSP 1 Score: 154.5 bits (389), Expect = 2.6e-34 Identity = 74/98 (75.51%), Postives = 85/98 (86.73%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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