Clc09G02180 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G02180
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Unknown protein
Location	ClcChr09: 1767961 .. 1768302 (-)
RNA-Seq Expression	Clc09G02180
Synteny	Clc09G02180

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAATCTTTCAAAATTGTCAAGCAGACGATCACCCAAGTACCCAAACCAAAAACTCAGAAACCCCCAATCGGAGATAGAAGCGATCACGAACTGGGTATCCCAAATTGAGGGCAAAGAATTCAAAATTGAGAAAGAATTGCGGAGAATGGAAAAAAGAAATCAAATCAAATGGTTAGTAATGGGTTTCAAGTTTCCAACTTCATTGTCAGTTTCGCTTTTGCACTTCAATGGGGATTGGGATTCGATTTTGGGCATTGGAATTTCATCCGCTTCTCGGACGATTGGGATTTTTGAGATAGGAATATCGGAGATTTTTCATACTATCATCATTCTCTAA

mRNA sequence

ATGAAGAATCTTTCAAAATTGTCAAGCAGACGATCACCCAAGTACCCAAACCAAAAACTCAGAAACCCCCAATCGGAGATAGAAGCGATCACGAACTGGGTATCCCAAATTGAGGGCAAAGAATTCAAAATTGAGAAAGAATTGCGGAGAATGGAAAAAAGAAATCAAATCAAATGGTTAGTAATGGGTTTCAAGTTTCCAACTTCATTGTCAGTTTCGCTTTTGCACTTCAATGGGGATTGGGATTCGATTTTGGGCATTGGAATTTCATCCGCTTCTCGGACGATTGGGATTTTTGAGATAGGAATATCGGAGATTTTTCATACTATCATCATTCTCTAA

Coding sequence (CDS)

ATGAAGAATCTTTCAAAATTGTCAAGCAGACGATCACCCAAGTACCCAAACCAAAAACTCAGAAACCCCCAATCGGAGATAGAAGCGATCACGAACTGGGTATCCCAAATTGAGGGCAAAGAATTCAAAATTGAGAAAGAATTGCGGAGAATGGAAAAAAGAAATCAAATCAAATGGTTAGTAATGGGTTTCAAGTTTCCAACTTCATTGTCAGTTTCGCTTTTGCACTTCAATGGGGATTGGGATTCGATTTTGGGCATTGGAATTTCATCCGCTTCTCGGACGATTGGGATTTTTGAGATAGGAATATCGGAGATTTTTCATACTATCATCATTCTCTAA

Protein sequence

MKNLSKLSSRRSPKYPNQKLRNPQSEIEAITNWVSQIEGKEFKIEKELRRMEKRNQIKWLVMGFKFPTSLSVSLLHFNGDWDSILGIGISSASRTIGIFEIGISEIFHTIIIL

Homology

[Close]

BLAST of Clc09G02180 vs. NCBI nr
Match: KGN45376.1 (hypothetical protein Csa_016141 [Cucumis sativus])

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-07
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 72  VSLLHFNGDWDSILGIGISSASRTIGIFEIGISEIFH 109
           V LLHF GDWDSIL IGISSAS TIGIFE+GISEIFH
Sbjct: 48  VPLLHFIGDWDSILDIGISSASWTIGIFEMGISEIFH 84

[Close]

BLAST of Clc09G02180 vs. ExPASy TrEMBL
Match: A0A0A0KC55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446910 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 2.8e-07
Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0


Query: 72  VSLLHFNGDWDSILGIGISSASRTIGIFEIGISEIFH 109
           V LLHF GDWDSIL IGISSAS TIGIFE+GISEIFH
Sbjct: 48  VPLLHFIGDWDSILDIGISSASWTIGIFEMGISEIFH 84

The following BLAST results are available for this feature:

BLAST of Clc09G02180 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45376.1	5.9e-07	86.49	hypothetical protein Csa_016141 [Cucumis sativus]	[more]

BLAST of Clc09G02180 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc09G02180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KC55	2.8e-07	86.49	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446910 PE=4 SV=1	[more]

BLAST of Clc09G02180 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G02180.1	Clc09G02180.1	mRNA