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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGAAGAATCTTTCAAAATTGTCAAGCAGACGATCACCCAAGTACCCAAACCAAAAACTCAGAAACCCCCAATCGGAGATAGAAGCGATCACGAACTGGGTATCCCAAATTGAGGGCAAAGAATTCAAAATTGAGAAAGAATTGCGGAGAATGGAAAAAAGAAATCAAATCAAATGGTTAGTAATGGGTTTCAAGTTTCCAACTTCATTGTCAGTTTCGCTTTTGCACTTCAATGGGGATTGGGATTCGATTTTGGGCATTGGAATTTCATCCGCTTCTCGGACGATTGGGATTTTTGAGATAGGAATATCGGAGATTTTTCATACTATCATCATTCTCTAA mRNA sequence ATGAAGAATCTTTCAAAATTGTCAAGCAGACGATCACCCAAGTACCCAAACCAAAAACTCAGAAACCCCCAATCGGAGATAGAAGCGATCACGAACTGGGTATCCCAAATTGAGGGCAAAGAATTCAAAATTGAGAAAGAATTGCGGAGAATGGAAAAAAGAAATCAAATCAAATGGTTAGTAATGGGTTTCAAGTTTCCAACTTCATTGTCAGTTTCGCTTTTGCACTTCAATGGGGATTGGGATTCGATTTTGGGCATTGGAATTTCATCCGCTTCTCGGACGATTGGGATTTTTGAGATAGGAATATCGGAGATTTTTCATACTATCATCATTCTCTAA Coding sequence (CDS) ATGAAGAATCTTTCAAAATTGTCAAGCAGACGATCACCCAAGTACCCAAACCAAAAACTCAGAAACCCCCAATCGGAGATAGAAGCGATCACGAACTGGGTATCCCAAATTGAGGGCAAAGAATTCAAAATTGAGAAAGAATTGCGGAGAATGGAAAAAAGAAATCAAATCAAATGGTTAGTAATGGGTTTCAAGTTTCCAACTTCATTGTCAGTTTCGCTTTTGCACTTCAATGGGGATTGGGATTCGATTTTGGGCATTGGAATTTCATCCGCTTCTCGGACGATTGGGATTTTTGAGATAGGAATATCGGAGATTTTTCATACTATCATCATTCTCTAA Protein sequence MKNLSKLSSRRSPKYPNQKLRNPQSEIEAITNWVSQIEGKEFKIEKELRRMEKRNQIKWLVMGFKFPTSLSVSLLHFNGDWDSILGIGISSASRTIGIFEIGISEIFHTIIIL
Homology
BLAST of Clc09G02180 vs. NCBI nr
Match: KGN45376.1 (hypothetical protein Csa_016141 [Cucumis sativus]) HSP 1 Score: 64.7 bits (156), Expect = 5.9e-07 Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 72 VSLLHFNGDWDSILGIGISSASRTIGIFEIGISEIFH 109
V LLHF GDWDSIL IGISSAS TIGIFE+GISEIFH
Sbjct: 48 VPLLHFIGDWDSILDIGISSASWTIGIFEMGISEIFH 84
BLAST of Clc09G02180 vs. ExPASy TrEMBL
Match: A0A0A0KC55 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446910 PE=4 SV=1) HSP 1 Score: 64.7 bits (156), Expect = 2.8e-07 Identity = 32/37 (86.49%), Postives = 33/37 (89.19%), Query Frame = 0
Query: 72 VSLLHFNGDWDSILGIGISSASRTIGIFEIGISEIFH 109
V LLHF GDWDSIL IGISSAS TIGIFE+GISEIFH
Sbjct: 48 VPLLHFIGDWDSILDIGISSASWTIGIFEMGISEIFH 84
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
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| KGN45376.1 | 5.9e-07 | 86.49 | hypothetical protein Csa_016141 [Cucumis sativus] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KC55 | 2.8e-07 | 86.49 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G446910 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 1..22 |
Relationships
The following mRNA feature(s) are a part of this gene:
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