Clc08G08210 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.atggtgtccgccaacagagagatggtggttttttgtttcgatacccttctcgctcactacaacggcgaggaagcccctccccccgctttcgatggcggtcaacagtaatttctttctccccttttcgtttttatatgtgcgatcatgttctgggatttgtttgcatgtttaggttttagcgtgtgatcgagactgtgttaattttaccgttggtgggtcggtttcgattatgatcatattgatcatcgttattggtttgtgatttcagggtttaattcattttagcaaattgtccattttgttgcttttggtgactgatgaagtgtttttttttcttttttgtttttgtttttttttttaaataattattttgaatatttcaatacaaatgttacatttcaggaacactgaggggagggaacatttaaagtttattataaataataatagttcaattgaattcgatttttgttttttcttttattgctgaattctttctgttttggctccttttcattttctctacaaagtatggtttctcatctaaaactaaaagaatgtattcgctagataatgattaaaaaatggggttgtggtgagtggtgatgaatggtaaaggggaacatctgttttctgtgtggctgccaggaaacccaatttagctacttgtttgtagctaggccgttcctgctacgtaatctgaaaagagcaacttttagtgagcatcacagggtaacgcctagtaaattgaatgtgcaactattttgacatctttttaaaactagatctgcccaagaagcttgttcctgtactttatatctctctctctctctctctctccctccctccctctctctctctctctcttttaattattattatttttccatatatttgcgaaggaaataagaatttgggcttcctcctcatggtaataacttaagaagcacggacattttagtttggctaacgtgtctgtgtcgggcacgtgaacacttcgacacttgttgggctattggacactcattagtgcaagaacttcgttagacttgcatagaacacttgttgagtagactaaaaagacacaagtataacaaataaattttgagtgtgaagtacatcaaactaagttttttaagcagtgcatcaattcatttactctgaattttctttttggtataaaagtgattttttttattttttctttttttaaaatgtatattttaataaatgtgtcattgccgtgttgtatcctagatttttaaaatatgaaatgtcgccatgtccgtgtcgtgttgtacccatgtcttgtatctgtatctgtacctcttaggtaataactaataagtcattgtacgctaattctagtaccatttgtataatgccaaggatctacttcagtgctgttgatgtcattgtttctaattttcctagaaagattaggcatcatctaaactgatgttagtagattataagtcataggttctcgttcaagagttgaggcaatgacatcaagtcctataatggttggttaatctgtatgatgaaatgtgtttctgctaaactaaacattgcttgtcttgaggctgtcttctctgtgcttttagcttatgattatgttttcctgtattcatagctttatcaaactgttgttaacacttgttggtttgacctttactgagtaatgatctttacgtttattgttatgtggtcatatctcagtttattaaacaaaaaggaaaaaaaaaaaagttgtcactggtcttcatacaaagccacgaataatattgtgtgttttctgagacatatctagctatctgtctgtttggttctttacattttgtgtgtgctttcatgtggtcagcataccaatttttcccctttttttgagttcaacaattgcggggtggagattaaaacatcgacttttgtgatggtaattagcatctttatccactgagctgcccagattggctggttagatatacttttgtagatgcttttgtgatgctaacctctcaaaagccttgtgcttcatatctagtatcttctcactatagattgcagctatttttagttcacatgaattttttttttctgccagccccttgttcgttacctggaaaaaagtggtcaatggtggtgaacctcgtttgcgagggtgcataggaactctagaagctcgctgcttgataaatggcttcaaggattatgctttaaataggtattgttgcataatgcatgcttctacctttcatgcactgctttatctaaaaacttcccaaatcagctggttgacccaaatattttggacaaagtatttcacagtatttgtgaatctgcgatgatggtgtttattattgaatttgctgtccatttctgcaagtattgatctctaaatgcatagattgaaattctcaattgaaagttatgtaatgatccaaaagtctgctaatgatgtcctactttgcttgtacaatgatggtggtgcatggtttgcaaccatggtccggcccaactccaagaatttgtacctcactgcttattattaattatgattgtctttgcacatacaataaaggtttgttctgcttacctttgctctggtagtgtaacatgaattaaaaataaatgagacttttcaattcttttgagttagattgggagttaaaagtgtaagatttttcatccaggccaaaaacgcaggagtaatttggattctattgtccttttttactctagtgaccaagcattccacaatttttttccatattctattttactattggaaagcttttctgcaatcctttggcttgtgttgcttccctacctgagttcggctagtggctagatggacaagtagtaaactcccatagtttctaaactccatgggtttaatttttggcagtcatctattgaaggtattaattttctttataaagaaagatttcaaatacaacattatggacgaatagtttgatttgttttttcccttcacgttggagatcttgcatgtataagaactgtatggcattttaaatttagtgtgtgtgtgtgtatgtctgtgtctttaatacgattgctgttgtgagtccttcatcacgttgttgtactttcaagcataccatagagttcctgaatttattacaaatgctgtgggatgtttttgtcagtgatcaaaacaaaggtttcacttaaagtatcatgtgatggagcaagttttttcacgttgccctttccttggctttcttaaatcaaattatataggagaaagtcgatggatgaatgagaagtctatatgcgtgagataagtgatccatactgttgtaagtttgcttcatttaaaactgatttgataaataaaattcagggaaaggagtggtggggagggagctgatttgtttaacgaagttcgagagagaatgaaaagtccattcttaagcgacctacctgatttatatgtaaattattcagattcatgcatgaggctcatttggggggggatgcgagtagaactcacacatgctctctctttttcattgtcatgactaaatgcaattttatttttctatccgttcaacttggcatactgcattggccatctaaagagttagtttgtgattactttcgtcttgaatatattgcagtgcattgagggatcggaggttccccccaatacagcctaaagaattaccatatttggaatgcacagtttccattctagttgattatgaaatagctacaaattatcttgattgggaggtatgtctctgttttgttttgttttgtttttccccttcttaatccaaggtttgtgtttgtgttcagtgagtataatagttggctttggttttctgctctctcacagaattga atggtgtccgccaacagagagatggtggttttttgtttcgatacccttctcgctcactacaacggcgaggaagcccctccccccgctttcgatggcggtcaacaccccttgttcgttacctggaaaaaagtggtcaatggtggtgaacctcgtttgcgagggtgcataggaactctagaagctcgctgcttgataaatggcttcaaggattatgctttaaatagtgcattgagggatcggaggttccccccaatacagcctaaagaattaccatatttggaatgcacagtttccattctagttgattatgaaatagctacaaattatcttgattgggagaattga atggtgtccgccaacagagagatggtggttttttgtttcgatacccttctcgctcactacaacggcgaggaagcccctccccccgctttcgatggcggtcaacaccccttgttcgttacctggaaaaaagtggtcaatggtggtgaacctcgtttgcgagggtgcataggaactctagaagctcgctgcttgataaatggcttcaaggattatgctttaaatagtgcattgagggatcggaggttccccccaatacagcctaaagaattaccatatttggaatgcacagtttccattctagttgattatgaaatagctacaaattatcttgattgggagaattga MVSANREMVVFCFDTLLAHYNGEEAPPPAFDGGQHPLFVTWKKVVNGGEPRLRGCIGTLEARCLINGFKDYALNSALRDRRFPPIQPKELPYLECTVSILVDYEIATNYLDWEN Homology
BLAST of Clc08G08210 vs. NCBI nr
Match: XP_004140906.1 (uncharacterized protein At2g38710 [Cucumis sativus]) HSP 1 Score: 247.3 bits (630), Expect = 6.4e-62 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Clc08G08210 vs. NCBI nr
Match: KAE8646635.1 (hypothetical protein Csa_004840 [Cucumis sativus]) HSP 1 Score: 247.3 bits (630), Expect = 6.4e-62 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Clc08G08210 vs. NCBI nr
Match: XP_008456604.1 (PREDICTED: uncharacterized protein At2g38710 [Cucumis melo]) HSP 1 Score: 247.3 bits (630), Expect = 6.4e-62 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Clc08G08210 vs. NCBI nr
Match: XP_038884933.1 (uncharacterized protein At2g38710 [Benincasa hispida]) HSP 1 Score: 246.9 bits (629), Expect = 8.4e-62 Identity = 111/113 (98.23%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Clc08G08210 vs. NCBI nr
Match: KAG6578821.1 (Vesicle-associated membrane protein 727, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 243.0 bits (619), Expect = 1.2e-60 Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy Swiss-Prot
Match: Q9ZVJ2 (Uncharacterized protein At2g38710 OS=Arabidopsis thaliana OX=3702 GN=At2g38710 PE=2 SV=1) HSP 1 Score: 204.9 bits (520), Expect = 4.8e-52 Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy Swiss-Prot
Match: Q6DCA0 (AMMECR1-like protein OS=Homo sapiens OX=9606 GN=AMMECR1L PE=1 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25 Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy Swiss-Prot
Match: Q8JZZ6 (AMMECR1-like protein OS=Mus musculus OX=10090 GN=Ammecr1l PE=1 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25 Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy Swiss-Prot
Match: Q5RDQ3 (AMMECR1-like protein OS=Pongo abelii OX=9601 GN=AMMECR1L PE=2 SV=1) HSP 1 Score: 115.2 bits (287), Expect = 5.0e-25 Identity = 55/108 (50.93%), Postives = 70/108 (64.81%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy Swiss-Prot
Match: Q9Y4X0 (AMME syndrome candidate gene 1 protein OS=Homo sapiens OX=9606 GN=AMMECR1 PE=1 SV=1) HSP 1 Score: 113.2 bits (282), Expect = 1.9e-24 Identity = 55/108 (50.93%), Postives = 68/108 (62.96%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy TrEMBL
Match: A0A0A0KCF5 (AMMECR1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G046200 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy TrEMBL
Match: A0A1S3C3L7 (uncharacterized protein At2g38710 OS=Cucumis melo OX=3656 GN=LOC103496514 PE=4 SV=1) HSP 1 Score: 247.3 bits (630), Expect = 3.1e-62 Identity = 112/113 (99.12%), Postives = 113/113 (100.00%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy TrEMBL
Match: A0A6J1JVT1 (uncharacterized protein At2g38710-like OS=Cucurbita maxima OX=3661 GN=LOC111489324 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 5.9e-61 Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy TrEMBL
Match: A0A6J1FGH3 (uncharacterized protein At2g38710-like OS=Cucurbita moschata OX=3662 GN=LOC111445467 PE=4 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 5.9e-61 Identity = 110/113 (97.35%), Postives = 112/113 (99.12%), Query Frame = 0
BLAST of Clc08G08210 vs. ExPASy TrEMBL
Match: A0A6J1BWN8 (uncharacterized protein At2g38710 OS=Momordica charantia OX=3673 GN=LOC111006378 PE=4 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.1e-59 Identity = 107/113 (94.69%), Postives = 111/113 (98.23%), Query Frame = 0
BLAST of Clc08G08210 vs. TAIR 10
Match: AT2G38710.1 (AMMECR1 family ) HSP 1 Score: 204.9 bits (520), Expect = 3.4e-53 Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 0
BLAST of Clc08G08210 vs. TAIR 10
Match: AT2G38710.2 (AMMECR1 family ) HSP 1 Score: 204.9 bits (520), Expect = 3.4e-53 Identity = 91/113 (80.53%), Postives = 100/113 (88.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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