Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGGCTCAGACAGATCAGATAAAGAGTACAAAATAGAGTCGGGAAGTGGAAAGTAGTGAAGAATATTCAGAATATTATTGGTCAAAAAGAAGAAGGAAAGCACAAAGAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTGTGTTGAAACAACTCTACGAATTCTCAGCTGGGAGCTGCAAGTGTTTGTACTCAAAGGCATTTTATGAATATGTGAAGCCAAAATTAATGAACAGGGAAGTGACGATGAGTGAAATGAGCAGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAGTAATAATCATGAATTGAAATTGTTAGGGCCTCACCGACGCCAAGTGTTTGTGTTATCGAACAGAATATGGGGAGATTATGATGAGGGAATGAAGCATTTGGAAGGGTTTAGGGAGTTTCTTGGAGAGATGGAGATCGATGTCAATTGTTTGATGCCTTCATGTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGAATTGATCTTGTATGTCAAATCTGATTCACCTACCTAA
mRNA sequence
ATGTCGGGCTCAGACAGATCAGATAAAGATAGTGAAGAATATTCAGAATATTATTGGTCAAAAAGAAGAAGGAAAGCACAAAGAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTGTGTTGAAACAACTCTACGAATTCTCAGCTGGGAGCTGCAAGTGTTTGTACTCAAAGGCATTTTATGAATATGTGAAGCCAAAATTAATGAACAGGGAAGTGACGATGAGTGAAATGAGCAGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAGTAATAATCATGAATTGAAATTGTTAGGGCCTCACCGACGCCAAGTGTTTGTGTTATCGAACAGAATATGGGGAGATTATGATGAGGGAATGAAGCATTTGGAAGGGTTTAGGGAGTTTCTTGGAGAGATGGAGATCGATGTCAATTGTTTGATGCCTTCATGTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGAATTGATCTTGTATGTCAAATCTGATTCACCTACCTAA
Coding sequence (CDS)
ATGTCGGGCTCAGACAGATCAGATAAAGATAGTGAAGAATATTCAGAATATTATTGGTCAAAAAGAAGAAGGAAAGCACAAAGAAGAAGAAAAAAGAGATCATCATCAGGTGGAGTATTGGAATGGGAGGAAGATGATGAAATCACTGTGTTGAAACAACTCTACGAATTCTCAGCTGGGAGCTGCAAGTGTTTGTACTCAAAGGCATTTTATGAATATGTGAAGCCAAAATTAATGAACAGGGAAGTGACGATGAGTGAAATGAGCAGCAAAATTGGTGGATTCAAAAACCAATATTTGGAGTGGAGAAGGAAAGGCAATAGTAATAATCATGAATTGAAATTGTTAGGGCCTCACCGACGCCAAGTGTTTGTGTTATCGAACAGAATATGGGGAGATTATGATGAGGGAATGAAGCATTTGGAAGGGTTTAGGGAGTTTCTTGGAGAGATGGAGATCGATGTCAATTGTTTGATGCCTTCATGTTTGGAATATCTTAAGAAAGAGTGGGAAGTTCAAATGCTTATGTACATTCAGCTTTTGTCAATCAAGTCCAACTTTGATGCTAAGCTTAGGGAATTGATCTTGTATGTCAAATCTGATTCACCTACCTAA
Protein sequence
MSGSDRSDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCKCLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYLEWRRKGNSNNHELKLLGPHRRQVFVLSNRIWGDYDEGMKHLEGFREFLGEMEIDVNCLMPSCLEYLKKEWEVQMLMYIQLLSIKSNFDAKLRELILYVKSDSPT
Homology
BLAST of Clc08G00020 vs. NCBI nr
Match:
KAG6585873.1 (putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 172.2 bits (435), Expect = 4.7e-39
Identity = 105/204 (51.47%), Postives = 134/204 (65.69%), Query Frame = 0
Query: 4 SDRSDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCK 63
SD K EE SE S+ + K+ K+ G VLEWEE+DEI VL+QLY+F G
Sbjct: 19 SDSEYKIEEESSEE--SEEQSKSNNNSSKKRIKGRVLEWEEEDEIIVLQQLYQF--GGSN 78
Query: 64 CLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYL--EWRRKGNSNNHELKLLGPHRR 123
YSKAFYE+VK +L N +V+M ++S+KI FK +YL E R+K N +LK H
Sbjct: 79 ASYSKAFYEFVKKRLNNNQVSMHQLSNKIDRFKKEYLKNECRKKEN----DLKFSEYHEF 138
Query: 124 QVFVLSNRIWG-----DYDEGMKHLEGFREFLGEMEIDVNCLMPSCLEYLKKEWEVQMLM 183
+VF+LS RIWG MK+ +GF E+L EM+ID++CL PSCLE+ KKEWEVQ+LM
Sbjct: 139 EVFMLSRRIWGGKRSKSNGGRMKYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLM 198
Query: 184 YIQLLSIKSNFDAKLRELILYVKS 201
YI+LLS KS FDAKL EL L+ KS
Sbjct: 199 YIELLSKKSKFDAKLMEL-LFTKS 213
BLAST of Clc08G00020 vs. NCBI nr
Match:
XP_022951915.1 (probable transcription factor At1g66420 [Cucurbita moschata])
HSP 1 Score: 171.4 bits (433), Expect = 8.0e-39
Identity = 105/207 (50.72%), Postives = 134/207 (64.73%), Query Frame = 0
Query: 4 SDRSDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCK 63
SD K EE SE S+ + K+ K+ VLEWEE+DEI VL+QLY+F G
Sbjct: 19 SDSEYKIEEESSEE--SEEQSKSNNNSSKKRIKRRVLEWEEEDEIIVLQQLYQF--GGSN 78
Query: 64 CLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYL--EWRRKGNSNNHELKLLGPHRR 123
YSKAFYE+VK +L N +V+M ++S+KI FK +YL E R+K N +LK H
Sbjct: 79 ASYSKAFYEFVKKRLNNNQVSMHQLSNKIDRFKKEYLKNECRKKEN----DLKFSEYHEF 138
Query: 124 QVFVLSNRIWG-----DYDEGMKHLEGFREFLGEMEIDVNCLMPSCLEYLKKEWEVQMLM 183
+VF+LS RIWG MK+ +GF E+L EM+ID++CL PSCLE+ KKEWEVQ+LM
Sbjct: 139 EVFMLSRRIWGGKRSKSNGGRMKYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLM 198
Query: 184 YIQLLSIKSNFDAKLRELILYVKSDSP 204
YI+LLS KS FDAKL EL L+ KS P
Sbjct: 199 YIELLSKKSKFDAKLMEL-LFTKSSHP 216
BLAST of Clc08G00020 vs. NCBI nr
Match:
XP_023521141.1 (probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 171.4 bits (433), Expect = 8.0e-39
Identity = 109/212 (51.42%), Postives = 139/212 (65.57%), Query Frame = 0
Query: 2 SGSDRSD------KDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLY 61
S D SD ++S E SE SKR + ++R KR VLEWEE+DEI VL+QLY
Sbjct: 14 SSEDNSDSEYKIEEESSEESEEQ-SKRNNNSSKKRIKRR----VLEWEEEDEIIVLQQLY 73
Query: 62 EFSAGSCKCLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYL--EWRRKGNSNNHEL 121
+F G YSKAFYE+VK +L N +V+M++MS+KI FK +YL E R+K N +L
Sbjct: 74 QF--GGSNASYSKAFYEFVKKRLNNNQVSMNQMSNKIDRFKKEYLKNECRKKVN----DL 133
Query: 122 KLLGPHRRQVFVLSNRIWG-----DYDEGMKHLEGFREFLGEMEIDVNCLMPSCLEYLKK 181
K H +VF+LS RIWG MK+ +GF E+L EM+ID++CL PSCLE+ KK
Sbjct: 134 KFSEYHEFEVFMLSRRIWGGKRSKSNGGRMKYAKGFSEYLEEMDIDIDCLTPSCLEHFKK 193
Query: 182 EWEVQMLMYIQLLSIKSNFDAKLRELILYVKS 201
EWEVQ+LMYI+LLS KS FDAKL EL L+ KS
Sbjct: 194 EWEVQLLMYIELLSKKSKFDAKLMEL-LFTKS 213
BLAST of Clc08G00020 vs. NCBI nr
Match:
XP_022973281.1 (probable transcription factor At1g61730 [Cucurbita maxima])
HSP 1 Score: 166.8 bits (421), Expect = 2.0e-37
Identity = 103/204 (50.49%), Postives = 132/204 (64.71%), Query Frame = 0
Query: 4 SDRSDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCK 63
SD K EE SE S+ + K+ K+ VLEW+E+DEI VL+QLYEF G
Sbjct: 19 SDSKYKIEEESSEE--SEEQSKSNNHSIKKRIKRRVLEWQEEDEIIVLQQLYEF--GGSN 78
Query: 64 CLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYL--EWRRKGNSNNHELKLLGPHRR 123
YSKAFYE+VK +L N +V+M + S+KI FK +YL E R+K N +LK H
Sbjct: 79 ASYSKAFYEFVKKRLSNNQVSMHQTSNKIDRFKKEYLKNECRKKEN----DLKFSEYHEF 138
Query: 124 QVFVLSNRIWG-----DYDEGMKHLEGFREFLGEMEIDVNCLMPSCLEYLKKEWEVQMLM 183
+VF+LS RIWG GMK+ +GF E+L EM+ID++CL PSCLE+ KKEWEVQ+LM
Sbjct: 139 EVFMLSKRIWGARRSKSNGGGMKYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLM 198
Query: 184 YIQLLSIKSNFDAKLRELILYVKS 201
YI+LLS KS F+ KL EL L+ KS
Sbjct: 199 YIELLSKKSKFNGKLMEL-LFTKS 213
BLAST of Clc08G00020 vs. NCBI nr
Match:
XP_022158994.1 (probable transcription factor At4g00610 [Momordica charantia])
HSP 1 Score: 134.0 bits (336), Expect = 1.4e-27
Identity = 85/208 (40.87%), Postives = 121/208 (58.17%), Query Frame = 0
Query: 7 SDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCKCLY 66
S+ +S+ E +RRR+ + + K+ + +W E+DE+ VLKQLYEFS + Y
Sbjct: 23 SESESDSEDEQRRRRRRRRHTKPKTKKKKAALSFKWREEDEVFVLKQLYEFSGKN--ATY 82
Query: 67 SKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYLEWRRKGNSNNHELKLLG----PHRRQ 126
S+ FYE+VK KL +V+M +M +KI G + +YLE N + LK G H+R+
Sbjct: 83 SEEFYEFVKKKL-GGQVSMHQMRNKIRGLRRKYLE-----NDECNGLKFCGSGSQQHQRK 142
Query: 127 VFVLSNRIWGDYDE----------GMKHLE----GFREFLGEMEIDVNCLMPSCLEYLKK 186
V S RIWG + G + +E GF E L EMEI+++CL PSCLE+L K
Sbjct: 143 VLAWSKRIWGAAENENENKNKNGGGTRSVEQYERGFVESLEEMEIEMDCLKPSCLEFLYK 202
Query: 187 EWEVQMLMYIQLLSIKSNFDAKLRELIL 197
+WE+Q LM++QLLS K DAKL EL +
Sbjct: 203 DWEIQTLMHVQLLSNKCKLDAKLTELCI 222
BLAST of Clc08G00020 vs. ExPASy TrEMBL
Match:
A0A6J1GK86 (probable transcription factor At1g66420 OS=Cucurbita moschata OX=3662 GN=LOC111454655 PE=3 SV=1)
HSP 1 Score: 171.4 bits (433), Expect = 3.9e-39
Identity = 105/207 (50.72%), Postives = 134/207 (64.73%), Query Frame = 0
Query: 4 SDRSDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCK 63
SD K EE SE S+ + K+ K+ VLEWEE+DEI VL+QLY+F G
Sbjct: 19 SDSEYKIEEESSEE--SEEQSKSNNNSSKKRIKRRVLEWEEEDEIIVLQQLYQF--GGSN 78
Query: 64 CLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYL--EWRRKGNSNNHELKLLGPHRR 123
YSKAFYE+VK +L N +V+M ++S+KI FK +YL E R+K N +LK H
Sbjct: 79 ASYSKAFYEFVKKRLNNNQVSMHQLSNKIDRFKKEYLKNECRKKEN----DLKFSEYHEF 138
Query: 124 QVFVLSNRIWG-----DYDEGMKHLEGFREFLGEMEIDVNCLMPSCLEYLKKEWEVQMLM 183
+VF+LS RIWG MK+ +GF E+L EM+ID++CL PSCLE+ KKEWEVQ+LM
Sbjct: 139 EVFMLSRRIWGGKRSKSNGGRMKYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLM 198
Query: 184 YIQLLSIKSNFDAKLRELILYVKSDSP 204
YI+LLS KS FDAKL EL L+ KS P
Sbjct: 199 YIELLSKKSKFDAKLMEL-LFTKSSHP 216
BLAST of Clc08G00020 vs. ExPASy TrEMBL
Match:
A0A6J1I882 (probable transcription factor At1g61730 OS=Cucurbita maxima OX=3661 GN=LOC111471848 PE=3 SV=1)
HSP 1 Score: 166.8 bits (421), Expect = 9.6e-38
Identity = 103/204 (50.49%), Postives = 132/204 (64.71%), Query Frame = 0
Query: 4 SDRSDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCK 63
SD K EE SE S+ + K+ K+ VLEW+E+DEI VL+QLYEF G
Sbjct: 19 SDSKYKIEEESSEE--SEEQSKSNNHSIKKRIKRRVLEWQEEDEIIVLQQLYEF--GGSN 78
Query: 64 CLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYL--EWRRKGNSNNHELKLLGPHRR 123
YSKAFYE+VK +L N +V+M + S+KI FK +YL E R+K N +LK H
Sbjct: 79 ASYSKAFYEFVKKRLSNNQVSMHQTSNKIDRFKKEYLKNECRKKEN----DLKFSEYHEF 138
Query: 124 QVFVLSNRIWG-----DYDEGMKHLEGFREFLGEMEIDVNCLMPSCLEYLKKEWEVQMLM 183
+VF+LS RIWG GMK+ +GF E+L EM+ID++CL PSCLE+ KKEWEVQ+LM
Sbjct: 139 EVFMLSKRIWGARRSKSNGGGMKYAKGFLEYLEEMDIDIDCLTPSCLEHFKKEWEVQLLM 198
Query: 184 YIQLLSIKSNFDAKLRELILYVKS 201
YI+LLS KS F+ KL EL L+ KS
Sbjct: 199 YIELLSKKSKFNGKLMEL-LFTKS 213
BLAST of Clc08G00020 vs. ExPASy TrEMBL
Match:
A0A6J1E125 (probable transcription factor At4g00610 OS=Momordica charantia OX=3673 GN=LOC111025438 PE=3 SV=1)
HSP 1 Score: 134.0 bits (336), Expect = 6.9e-28
Identity = 85/208 (40.87%), Postives = 121/208 (58.17%), Query Frame = 0
Query: 7 SDKDSEEYSEYYWSKRRRKAQRRRKKRSSSGGVLEWEEDDEITVLKQLYEFSAGSCKCLY 66
S+ +S+ E +RRR+ + + K+ + +W E+DE+ VLKQLYEFS + Y
Sbjct: 23 SESESDSEDEQRRRRRRRRHTKPKTKKKKAALSFKWREEDEVFVLKQLYEFSGKN--ATY 82
Query: 67 SKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYLEWRRKGNSNNHELKLLG----PHRRQ 126
S+ FYE+VK KL +V+M +M +KI G + +YLE N + LK G H+R+
Sbjct: 83 SEEFYEFVKKKL-GGQVSMHQMRNKIRGLRRKYLE-----NDECNGLKFCGSGSQQHQRK 142
Query: 127 VFVLSNRIWGDYDE----------GMKHLE----GFREFLGEMEIDVNCLMPSCLEYLKK 186
V S RIWG + G + +E GF E L EMEI+++CL PSCLE+L K
Sbjct: 143 VLAWSKRIWGAAENENENKNKNGGGTRSVEQYERGFVESLEEMEIEMDCLKPSCLEFLYK 202
Query: 187 EWEVQMLMYIQLLSIKSNFDAKLRELIL 197
+WE+Q LM++QLLS K DAKL EL +
Sbjct: 203 DWEIQTLMHVQLLSNKCKLDAKLTELCI 222
BLAST of Clc08G00020 vs. ExPASy TrEMBL
Match:
A0A6J1GIT7 (STOREKEEPER protein-like OS=Cucurbita moschata OX=3662 GN=LOC111454656 PE=3 SV=1)
HSP 1 Score: 65.5 bits (158), Expect = 3.0e-07
Identity = 46/140 (32.86%), Postives = 69/140 (49.29%), Query Frame = 0
Query: 42 WEEDDEITVLKQLYEFSAGSCKCLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQYLE 101
W E+DEI++L YE+ K FYE++KP+L+ V S++S KI K +++E
Sbjct: 33 WSEEDEISLLSGYYEYQGIKAKSDIG-GFYEFIKPRLLRSCVKQSQVSDKICRLKKKFME 92
Query: 102 WRRKGNSNNHELKLLGPHRRQVFVLSNRIWGDY----DEGMKHL--EGFREFLGEMEIDV 161
K N H PH + +F LS +IWG E L E F FL +DV
Sbjct: 93 HSSKFEHNTHNT----PHLQTLFELSTKIWGSMVCSKFEVSNDLMCEEFDGFLFHEGVDV 152
Query: 162 NCLMPSCLEYLKKEW-EVQM 175
L + +K+++ EVQ+
Sbjct: 153 ELLESERVRSMKRKFGEVQL 167
BLAST of Clc08G00020 vs. ExPASy TrEMBL
Match:
A0A6D2LHW5 (Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS48046 PE=3 SV=1)
HSP 1 Score: 63.9 bits (154), Expect = 8.7e-07
Identity = 39/94 (41.49%), Postives = 54/94 (57.45%), Query Frame = 0
Query: 42 WEEDDEITVLKQL--YEFSAGSCKCLYSKAFYEYVKPKLMNREVTMSEMSSKIGGFKNQY 101
W EDDEITVL+ YE AG+ + S AFYE VK K ++ +V +++ K+ G K ++
Sbjct: 162 WTEDDEITVLQGFIDYEADAGASPFVNSTAFYESVK-KSISFDVKKTQVMEKVRGLKKKF 221
Query: 102 LEWRRKGNSNNHELKLLGPHRRQVFVLSNRIWGD 134
R KG + + K PH R+ F LS IWGD
Sbjct: 222 ENNRSKG-KDGEDPKFAKPHDRKAFDLSKIIWGD 253
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAG6585873.1 | 4.7e-39 | 51.47 | putative transcription factor, partial [Cucurbita argyrosperma subsp. sororia] | [more] |
XP_022951915.1 | 8.0e-39 | 50.72 | probable transcription factor At1g66420 [Cucurbita moschata] | [more] |
XP_023521141.1 | 8.0e-39 | 51.42 | probable transcription factor At1g61730 [Cucurbita pepo subsp. pepo] | [more] |
XP_022973281.1 | 2.0e-37 | 50.49 | probable transcription factor At1g61730 [Cucurbita maxima] | [more] |
XP_022158994.1 | 1.4e-27 | 40.87 | probable transcription factor At4g00610 [Momordica charantia] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A6J1GK86 | 3.9e-39 | 50.72 | probable transcription factor At1g66420 OS=Cucurbita moschata OX=3662 GN=LOC1114... | [more] |
A0A6J1I882 | 9.6e-38 | 50.49 | probable transcription factor At1g61730 OS=Cucurbita maxima OX=3661 GN=LOC111471... | [more] |
A0A6J1E125 | 6.9e-28 | 40.87 | probable transcription factor At4g00610 OS=Momordica charantia OX=3673 GN=LOC111... | [more] |
A0A6J1GIT7 | 3.0e-07 | 32.86 | STOREKEEPER protein-like OS=Cucurbita moschata OX=3662 GN=LOC111454656 PE=3 SV=1 | [more] |
A0A6D2LHW5 | 8.7e-07 | 41.49 | Uncharacterized protein OS=Microthlaspi erraticum OX=1685480 GN=MERR_LOCUS48046 ... | [more] |
Match Name | E-value | Identity | Description | |