Clc07G08105 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G08105
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description30S ribosomal protein S11, chloroplastic
LocationClcChr07: 21339795 .. 21340002 (-)
RNA-Seq ExpressionClc07G08105
SyntenyClc07G08105
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGGTTAATTTTCTAGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGAAAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGATCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

mRNA sequence

ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGAAAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGATCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

Coding sequence (CDS)

ATGACATATAATTGTGATTGTTACAAACGTACGGGGTCGTCCTCTACGGATACGTGTGGATTCAAAGGTACAAGAAGAGGGACACTATTTGCCACTCAAACCACAGCAGAAAATGCTATTCGGGCAGTAGTTGATCAAGGTATGCAACGATCCGAAGTTATGATAAAGGGCCCTGGTCTAGAGTTCTATCATTAA

Protein sequence

MTYNCDCYKRTGSSSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGLEFYH
Homology
[Close]
BLAST of Clc07G08105 vs. NCBI nr
Match: QYH50881.1 (ribosomal protein S11 [Saussurea tanguensis])

HSP 1 Score: 81.3 bits (199), Expect = 3.4e-12
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14 SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
          SS  TCGF+GTRRGT FA QT AENAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 52 SSAGTCGFRGTRRGTPFAAQTAAENAIRAVVDQGMQRAEVMIKGPGL 98

[Close]
BLAST of Clc07G08105 vs. NCBI nr
Match: YP_009634717.1 (ribosomal protein S11 [Nyctanthes arbor-tristis] >QBS49769.1 ribosomal protein S11 [Nyctanthes arbor-tristis])

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT AENAIR VVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAENAIRTVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. NCBI nr
Match: KAD4981935.1 (hypothetical protein E3N88_18606 [Mikania micrantha])

HSP 1 Score: 80.9 bits (198), Expect = 4.5e-12
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGF+GTRRGT FATQT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 512 SSAGTCGFRGTRRGTPFATQTAAANAIRAVVDQGMQRAEVMIKGPGL 558

[Close]
BLAST of Clc07G08105 vs. NCBI nr
Match: YP_009905930.1 (ribosomal protein S11 [Vasconcellea cundinamarcensis] >QLG90337.1 ribosomal protein S11 [Vasconcellea cundinamarcensis])

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QTTA NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTTAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. NCBI nr
Match: YP_009752191.1 (ribosomal protein S11 [Linnaeosicyos amara] >QIT05601.1 ribosomal protein S11 [Linnaeosicyos amara])

HSP 1 Score: 80.5 bits (197), Expect = 5.8e-12
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAARNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy Swiss-Prot
Match: A0ZZ68 (30S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps11 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy Swiss-Prot
Match: Q2L937 (30S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy Swiss-Prot
Match: Q6EW19 (30S ribosomal protein S11, chloroplastic OS=Nymphaea alba OX=34301 GN=rps11 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.3e-14
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy Swiss-Prot
Match: B2LMM6 (30S ribosomal protein S11, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rps11 PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 2.2e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14 SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
          SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 52 SSAGTCGFRGTRRGTPFAAQTAAANAIRAVVDQGMQRAEVMIKGPGL 98

[Close]
BLAST of Clc07G08105 vs. ExPASy Swiss-Prot
Match: B1A968 (30S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.9e-14
Identity = 39/47 (82.98%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy TrEMBL
Match: A0A5N6NML1 (S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18606 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGF+GTRRGT FATQT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 512 SSAGTCGFRGTRRGTPFATQTAAANAIRAVVDQGMQRAEVMIKGPGL 558

[Close]
BLAST of Clc07G08105 vs. ExPASy TrEMBL
Match: A0A4D5Y202 (30S ribosomal protein S11, chloroplastic OS=Nyctanthes arbor-tristis OX=41398 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT AENAIR VVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAAENAIRTVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy TrEMBL
Match: A0A7D5QJ83 (30S ribosomal protein S11, chloroplastic OS=Vasconcellea cundinamarcensis OX=35926 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-12
Identity = 40/47 (85.11%), Postives = 42/47 (89.36%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QTTA NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTTAGNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy TrEMBL
Match: A0A6H0ETH3 (30S ribosomal protein S11, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-12
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QT A NAIRAVVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTAARNAIRAVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. ExPASy TrEMBL
Match: A0A6M3RIU1 (30S ribosomal protein S11, chloroplastic OS=Euphorbia larica OX=1031526 GN=rps11 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.8e-12
Identity = 40/47 (85.11%), Postives = 41/47 (87.23%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGFKGTRRGT FA QTTA NAIR VVDQGMQR+EVMIKGPGL
Sbjct: 54  SSAGTCGFKGTRRGTPFAAQTTAANAIRTVVDQGMQRAEVMIKGPGL 100

[Close]
BLAST of Clc07G08105 vs. TAIR 10
Match: ATCG00750.1 (ribosomal protein S11 )

HSP 1 Score: 76.3 bits (186), Expect = 1.0e-14
Identity = 38/47 (80.85%), Postives = 40/47 (85.11%), Query Frame = 0 

Query: 14  SSTDTCGFKGTRRGTLFATQTTAENAIRAVVDQGMQRSEVMIKGPGL 61
           SS  TCGF+GTRRGT FA QT A NAIRAVVDQGMQR+EV IKGPGL
Sbjct: 54  SSAGTCGFRGTRRGTPFAAQTAAGNAIRAVVDQGMQRAEVRIKGPGL 100

The following BLAST results are available for this feature:
BLAST of Clc07G08105 vs. NCBI nr
Match NameE-valueIdentityDescription
QYH50881.13.4e-1285.11ribosomal protein S11 [Saussurea tanguensis][more]
YP_009634717.14.5e-1285.11ribosomal protein S11 [Nyctanthes arbor-tristis] >QBS49769.1 ribosomal protein S... [more]
KAD4981935.14.5e-1285.11hypothetical protein E3N88_18606 [Mikania micrantha][more]
YP_009905930.15.8e-1285.11ribosomal protein S11 [Vasconcellea cundinamarcensis] >QLG90337.1 ribosomal prot... [more]
YP_009752191.15.8e-1285.11ribosomal protein S11 [Linnaeosicyos amara] >QIT05601.1 ribosomal protein S11 [L... [more]
BLAST of Clc07G08105 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A0ZZ681.3e-1485.1130S ribosomal protein S11, chloroplastic OS=Gossypium barbadense OX=3634 GN=rps1... [more]
Q2L9371.3e-1485.1130S ribosomal protein S11, chloroplastic OS=Gossypium hirsutum OX=3635 GN=rps11 ... [more]
Q6EW191.3e-1485.1130S ribosomal protein S11, chloroplastic OS=Nymphaea alba OX=34301 GN=rps11 PE=3... [more]
B2LMM62.2e-1482.9830S ribosomal protein S11, chloroplastic OS=Guizotia abyssinica OX=4230 GN=rps11... [more]
B1A9682.9e-1482.9830S ribosomal protein S11, chloroplastic OS=Carica papaya OX=3649 GN=rps11 PE=3 ... [more]
BLAST of Clc07G08105 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5N6NML12.2e-1285.11S1-like domain-containing protein OS=Mikania micrantha OX=192012 GN=E3N88_18606 ... [more]
A0A4D5Y2022.2e-1285.1130S ribosomal protein S11, chloroplastic OS=Nyctanthes arbor-tristis OX=41398 GN... [more]
A0A7D5QJ832.8e-1285.1130S ribosomal protein S11, chloroplastic OS=Vasconcellea cundinamarcensis OX=359... [more]
A0A6H0ETH32.8e-1285.1130S ribosomal protein S11, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=rps... [more]
A0A6M3RIU12.8e-1285.1130S ribosomal protein S11, chloroplastic OS=Euphorbia larica OX=1031526 GN=rps11... [more]
BLAST of Clc07G08105 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00750.11.0e-1480.85ribosomal protein S11 [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001971Ribosomal protein S11PFAMPF00411Ribosomal_S11coord: 11..59
e-value: 5.2E-11
score: 42.9
IPR001971Ribosomal protein S11PANTHERPTHR1175940S RIBOSOMAL PROTEIN S14/30S RIBOSOMAL PROTEIN S11coord: 14..60
IPR036967Ribosomal protein S11 superfamilyGENE3D3.30.420.80Ribosomal protein S11coord: 6..61
e-value: 1.7E-9
score: 39.9
NoneNo IPR availablePANTHERPTHR11759:SF4930S RIBOSOMAL PROTEIN S11, CHLOROPLASTICcoord: 14..60
NoneNo IPR availableSUPERFAMILY53137Translational machinery componentscoord: 13..60

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G08105.1Clc07G08105.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006351 transcription, DNA-templated
biological_process GO:0006413 translational initiation
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0015934 large ribosomal subunit
cellular_component GO:0005840 ribosome
molecular_function GO:0003899 DNA-directed 5'-3' RNA polymerase activity
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003743 translation initiation factor activity