Clc07G06160 (gene) Watermelon (cordophanus) v2

Overview
NameClc07G06160
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionDNA helicase
LocationClcChr07: 10901087 .. 10910859 (+)
RNA-Seq ExpressionClc07G06160
SyntenyClc07G06160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTTTTAAAGTATTTGAATCCAATGGTTTGGTTGGTCTAATTTCATAATTGTTTTGAAAATTTACTACTGATTAGTTAATTTTAATTTCTTGTTTCATACCCAATTCTTTTTTTCTTTTTCTTTTTTTTCTTTTCTTTTATTATTTTTTTATATATTTCATGCAGAGGCATAGATGCATTGCCTATCAATGTAGATCCCATTCCAGAAGACATAACTCAGGGCTTTGGGCTGTTACGTCTTCATGATGTAAGTGTACTTTTGCATTTAGTTCAGTGGAAAATGGGGGAGGTTCGAGAGAAAATACTCAATATTTCATCTACCTAAGTCATATAGATGCATGTGGAGCTGTTGAACTAACATATCTAAATGTACTTAGGAATTTAGAATATATTCTCACTTCTATTATTCAGAGTAAAGTTACATATATTTAGGAACAAATAAACCCTAGACTAGGTATGTACAATTACGATAAAAGACAATTATACATGAACATGTAAAACATGTATTATAACACTCCCCCTCAAGCTGAAGCAAATATGTCAATCATGCCTAGCTTGTTGCATAGATAGCTTATTCTTGCTCCATTTACAGCTTTGGTAAGAATATCTCCCAATTGTTCTCCAGTCTTCAATCAAGACGAGGTTTGGCAACAAGACGAGCTTTCAATCGAGCCATTGTTCCATCGGGGTTAACCTTGATAGCAAACACCCATTTACATTCAATTGTCTTCTTTCCAGTAGGATGAGATAAGGATGCAAGGATAAATCGACAACATGAAAAAATCGTTTAAGCTTACCGAAACCGAATTGTCAGGTCAGGTTGAAACCAATTGACTTAGCGGTTTCGGTTTGGAAATTTTAAAAATTGAAAATTTAGGGTCGGGTTTGAGTTTGGTTAAGAACACAGTAAATTAAAGCGATCCGATCGATAATTAATATATATATTACAGTTCATAGTGTGTAACAAATAGCATGGCTAGTTTCGTTGGCGGTGAAGGCAACCTATGATTCCCGATGGTGTGAGTTCGAGACATTAGGATGCCAAAATTTTATTTTATAATGAAGTCTTCCCGTGCGTATGATCCAACCCATAAACAAGTGAGATGGTGAGGCTTGCAACCCATTATTCATAGGTTGAAGATAGTCAAGCGATGGACCGCTAGACCGAACGGACCAAACCATTGGCTGGTTAGTTCGAGCGGTTCAGTTAAAATACTACAAGTGGTTCAGTCCGGCTTCTTCAAATTTCTTTCTAAATTTGGTGGTTCGGCTCGGTTTATCTGTCAAATTGAGCCGAGTCGAGCCGAATCGATTACACCTCTAGGATGAGAGACTAAATCCCAAGTACCATTATCATCTAAAGTAGTCATCTCGTCAATCATTGTACTACCCTAGCGAGGATGAGATAAAACTTCATGAACAGAGTTAGGAATAGAGGTGGAATCAAAGGATGTACTAAAAGAATATGTGGGCGAGGACAACTGATGATGTGAAACAAATGAAGAAATAGGGTAAGTACAAGTGCGTTTACCTTTCCGAAGGGCGATGGGAAGATCATCACTTGGTTTTGGATAGTCATTGGTGTAGGACATGTGCTTGAAGGTAGTTGTGGAAGTCGCCTGGAGTAAACTCGAGTAACGGGTGGACGAGAAGGAAGTGACAGAGGAAGATGGAGTAGATGATGTGGGAGAGATAATCTCATAGATAAAAAGATCATCATCCTGCCCTTGACACGAACTTGACGGCGATGGACTAAAGGGCATATCTTCGAGAAACGTAACATTAGGAGAGACAAGATATTTGTTAAGAGTAGGACAATAACAACGATATTCCTTTTGAACACTCGAATAACCTAAGAATATGCATTTCAAGGATTTGGGATCTAACTTGGTATGATGAGGACGGAGAAAAAAAGGGGAAAAAAGGTAAGGATGCTCTCTCCTCTCTCCTCTCCCCCCTCCCCCTTCTCTTCTTCGATCAGTAGCTCTGGTCAGATTCTGTTCTACCTGATCATTCTTCTTGTCAAACACTCTCTTCTGAAGTATGGTAGTGAAAAGTAATGGGTTCTATTTTTGTATTTTGGCATGATTTTGGATTTTTCTACGTGGAAGACTTGGAAGTCAACAAGCTCCTTTTCCTCTCGAAGTCTCAACTCAGTTGGTTTGTTGAAAATATTTTAGATATGATCAAGGACTCTGCTTCACACTTTCTTGAAAGGAGCAGACATGATGGTTCAGGTGCCACAAAATTGTCTAAGTTCCACAGCTTCTCAGATTGGATTATGAGATGTGTTGTATGGCCATCTTGTGGGGGGAAGATACTTTATTCATATTCCTTCCAGAGAATCGATGCAAGGTTGGTATTCTTTTGTGGTAATGCTCCTAGACTTTAAAAAAAATTTAAAGATCCCACGAAGTCTTTTATTTTGAGAAGGGAGTCATCAAATTTAGTTTTGCCAAATGAGGGAGAAGACTACGTTGACCTTGTGAAGACCTCGAAAGCTCAACAATGCTCTGTTTTCTCGTCGAAGAAACAAAGTACGGACTAGGTAGCTTTTCCATGTCTGAAGTAGGGCTCTGTTTTAGCACCCGATAAACAAAGTGAGTTCCATTATTGGATGTTAAAGAACTCCGACGTTATACAAGAAGATTTTAGCAATTTGTGGATAGTTTCCAAATTGTTTGATTTTAATGATTGGTCGGAAATAGCTAGAACGTTAAAGGATTACTTTCAATTGGAGATCATTGGCAATTCTCTGTTTGCAAAAAATGCCTAAATGCCTTACTAAAGCTGGACCAAGGAACTATCGAGGAATTAATTGAGGAACTGGGAAAATGGCATATTTGTGGTTCGTTTCATTTGAAATTTGAGAAGTGGAACAAGTTTGTGCATAGCTGGCCGTTGTATTCAAAAGGATACAGCGGATGGATCTCCATTAAGAATTTCCTGAACCTAAGTATAGGAAAAGATAATTTTTCTTATTCCTTGAGTGATTGAGATAGACTCAATATATACAAGAAGATTATCAATCAATGTGCTGAAATTAAACTATCAATCTAAACTTATATGGAAAGAAAGACAATTACAATATACGAGGAAATAATCTGAATTAATTATCTAATTTACAACTACATAATTTAGCTTGATTTCCTACATCTCCCGTTAGGCTATTGGTGTAGACAAACTTCTGAAGCTATTGGAGCCTATTTTGGAGGACTGAAAGATATTGTAATGGATACTTTGAACCTTAACGTTTTTGAAGCTAAGATTCAAGTTAAAAAAAATTTATGTGGTTTCACTCCATCAACCATAGACATTTCGAATGAGTGAATCTATTTTTCTAAATTTTGGAGACATTGAATTAATTGATTCTCCCTCAAAAGTAAAAGATGATTTATTTGTTAAATATTTTACAAAACCAATTGATTTAGTCTGATTGAATCAAGCTTTACAAGATGAAGGATTAGAGTTTGAAGCTTTAGATCCTAGCTTAGATTTTCTGTTACTTTCTCGGCTTTCCTCAAACTATTTAAGAAATCCACCAGCTTCCTGCACAAAGGGGGAAAACTTCTCGCCGAAAAAGACAACGAAAGTCGGTCGATCGGTTTCAATTGAACCTGATTCCAAAACATTGCCATTAGAGAAGACAATTGTGTTTTCTTCTAATTTCGATGTGAACGCAGAGCATCACTTAATGAAGAGTGAGAAAGTCATTGGGGGATATAGCCTTTTGCCAAAAAAGACCCTTGACATCGCTTTCGAAAGATTTCCAAATGGTGTTTGCCGCCAAGGATGTCGCTGTCTCAGCCGATGCACTTCCCAAGAATTTTAGCCCCATGCCTAAAGTTGTTTCAAACCCGTTCGTTTCCCCAACCAATGAAATCTCCCCTTTAAAAAAAGGTTAAAGTTGTCGGTTCCCTCTTCAATGAAAAAGAATTAAATGCTTGCTCTAATAATCTATCTCCTGGAATTTCAAAAGACGACAGCCCCCTTCAATCAACGGTCCCTTCTTCTTTATTCCAATTCAAAAGTAACTTTAATTCTTCTCCCCCAACGAGTGACTCTCACCCATTGAAACCAAAGAAGTATCCCCACTTGCTCAAGCCATTCCCCAAGCATTTTGCCAGAAAAAAGACTTCATTTCTAAAATCTTGGTCTATGATTGTGAACTTGAAAAAAGACTTCATTTCTAAAATCTTGGTCTATGATTGTGAACTTGGATTTGCTTGAGGAATGTTGCGTTAAAGTTCAACTCCTAGGGCTTTTTCCAAAAAAGGTGGACATCTCTTCCTGTTTCTTTTTCCCATTTAGATTTTAAAATTCCTGGCTCCAATGTAAATTTTGTGAGAGGTCTCTCGGCTAGTTTTTCAAGCAATTATTGCCACAAAAACAAGGTTTAGACGGGGATTCGGATGGAGATTCATAAGCAAGTGCTAGCAGTGAAGAGATAGAAAAATTTGAAACAGAGGATGGAAACCACGAGGAAGAAGATTAAGTTGATGGGTTTGCCAGTGACTTTCAACAATTATTTCAATTAGAGGAAGGACATTCGTTTACTCCCCTCGAAAAGAGTGAAATTCCACAACATCAACATTCAATAATTGATGCTTGCGATATCGTTCTTGGTTGAGTTTTGTTTTAGCTGTATGTCCTATTTTGAGGTTGTTTTGGTTTAGTCTTCATTAAAGGTCCTACCGTAGTTCACAAGAGGTTTAGAAGCATCCCTAGTCGGATGGGTTTTATTAGATGTTTGGAAGGTTTTCAACTTGGTTTTAGTTGCTGCTCCTCGTCTTTCATAATTTGCAGTTTGGAGGGCTCATTTGCTTCTATTTGGCATTCTACTAATATTGTTTGTCCTAGCCTTTTGCTGATTTCTTCCTAAGTCTTTTGTCTATGGTTGTTTAAGATCTAAGTTTGGCTCAGACTAGGGGAGGCTTCTTTGTTGGCCTCTTCCAAAGTCATTTTGGCTGTTCTCCATTTCAAGCTTCATCCGTTTTCATCTACTTTCAAAATATTGCGCTCCTCTTGGCTCAAGCTTCGTTCATTGCCTTTTGTTCGGTTCGTTTTGACCTTTTTGTTATATGGGCGCTCGTAATTCTTTTTCTTTTGTTCCCAAGGTTTAGTCTTTTCATTTGTTTCTTGTTTTTTCAGCTTATATGTTGTATCTTGCTTTTAGTTTCGTTGTACTTTGAGCTTTTGACTCTTTTCATTTTATCAATGAAAAAGTCATGTTTTTGTTTCAAAAAAAAAAAAAAAAATTGAGGATGATCATCCCGAGCAAAATAAACGCAACCAAATATCTTTAGAGCAATAAGAAATAAATATTTGGTAGGGAAAAGAACATGATAAGGAATCTCACCATTAAGGACAGGGAAATGCATTCTATTAATAAAAACACAAACGGTGGAAACTACATCGGCCCAAAATTGTTTTGGAACATGCATTTGAAAGGATAGTGCACGTGTAGTTTCAAGTAAGTTCCGATTCTTTCATTCAACAATTCCATTTTGGGATGGAGTGTCGGCACAAGAGGATTGATGAATGATGCCATGTTCACACAAGTAAGATCCAAGTACATGAGAAAAATATTCACTAGCATTATCAGTGCGCAAAGTTTTGATAGACATTAAATTGATTTTGAATTTCAGCATGAAAGCACATAGTGAGATAGTAACTCAGAATGATTTTTCATTAAATATAACCAAGTCAAACGAGAATAATGGTAAACAAAAGTAACAAAATAACAAAAACCTGTTTGGGACACGACCGGGCAAGACCCCCAAATATCAGAATGAACTAATTCAAATGGAGCACTTGCTCGTTTATGGACTCTAGGACTAGAATTAAGATGATGAAATTTAGTGAACTGACATGAATCACAATTCAAAGAGGACGAAGACCGAAACTCTGAATAAAGTTTCTTCAACACGAACAAAGACGGATGACCCAAACGACAATGAACTTCAAACGGAGATGTAACCCCAGAGCAAGCCACAACTTTCGGTATTTAGTGATAAAAAATATAAAGACCTCCTAACTCATATCCTCTACCAATAATCTTCTTTTTCATATGATCCTAAAACAAACAATAACTAGAAAGAAACGAGACAACACAGTTAAGGTTGAGTAAGTAAAGGATAGTTGAGACAAATGTAAAACAGAAGACAGATAAAAGGATGGGGAAAGGTTAATGGTGCTAGAACCAAGAACAGAAGATGTTGAGTCATTTGCCAAAGTGACAGATGGAGAAGACGCAGGGGACAACAGTGTAGAAAATAAGCTAAAATTATCTGTCATATGAGTTGTGGCACTAGAGTCTATGACCTAGTTGGTAGATTATGTAAGGAGACATTTCATATTACCTGTGTCACCAATGGTGACAGTATGATTAGATGAAGATGATGCTTGTAATGAGTCTTGGTACACCTAAAATTTAGCAAACTCATATGTAGAAATGGTAACTGACTTCTATGTTATATCATTGGTAGAAACTATCTGACCATGCTGAGATCGTTGATTCTTTTATACAACAACTTTCGACAGTCACGTTTCAAATGGCTAGCCTTATGACAGTGGTTATAGACAATCTCTTGAGAATCTGATTTTCAATTATCATAATTAGTTCTCTGAAAATTTTTGTCCATCCCTCGTGGACCTTGGGGTTTTTTTTGTTAATAAGAGCACTGTTGGGTTGAGAAACAGGTAAGCTGGATTGAGAACTCTCGATGCAAAGAACACGACTGAAAGCATCTTCTAATGACAGGATTTTAGAGTCAGAAAGAATTTGTGTTTTGTCCATTCCAAATTCATGTAAAAGTTCATTTAGAAAGATCATAACCGCCATCTTTTCTCACTAAGCTTGTTAAACTTTAACATCTGGGCTGAAAGGTAATAACAAAGCAAGCTCGACAGCAATCCTCTTAAGTCTTATAAAGTAGCTAGTCACAAATTTTGCTTTCTATTCCGCACAAAAGAACTGCATACAGACTTCAAACATTTTTAGAACTTGCTCTTTACTCGAATACATAAATTCTAAAAATTCTAAGAGCTCCTTCATGAAATTATAATGATCAACCAAACCAATTACCTCACTCTCAATGGAACTTTTTATCTGAAGCTAAAGTTGAGTGTCATCACGAAGCCATTCCTTCTTCTTATCATCTTCTGGTGATCCGCAATCATATGCTCATCTATATTAGTATTTCGTTAATAAAACAGAATTGTCCAACACCAATCATAGTAATTAGATCCATTTAACTTGTGTTTTGTGATCTTTGAGGCTAGGAGAATCACATTAGATACCACCAAATTCTTCATTGTATCCATAATGAATTTACACACGGACGGTAGATCTCACAAATGGAACAAGAACAAAGAACCAAATGATCAAAACAACCACAAAATTGAACAAAACAGCCACAAACCCTAGAAAAAAAGATGTATTCTTCAAATATCTTCATGGCCAAATGGATTTCGATGGAACCAAATGCATAGCTAATTTGAAAAGAGGACCCGAGACGAACCCAACTGACGAAACACGAAATGGAGCTCCCACGTGTCGGCGTGTGGCGACGGAGTAGATTCCTTTTGGTGGTGCGTGAACCTCATGCGTGGCGTTTTCCGGTGAACGGTGAAGACCGATGGCAGCGGACGACGGCGCGCTCCTCCTAAGGTGGGCGGTGTAGACAAACGACCACTTGAACTTGGTGACCTAAACTCAAACCCTAATTTTGTGAGAGCGTAGTCGTCAAACGAACATTCTAAACCCTAGAGACTCTTTGATACCATGTACTCAGTAATTTAGAATATATTCTCACTTCTATTATTTGGAGTAAAGTTATATATATATATAGGGAACAAAGAAATGCTAGACTAGGTATGTACAATTATGATAAAAGACAATTATACATAAATATGTAATACATGTATTATAACACTAAAATTGAATAAAAGAAGAATAAAAGGAACGACAATCTTCATGGACAAATTTCTTCTTCAAACTTGTAATCTATTTTTGTAAATGCTCATGGTTGGTTTAAATGTTTTTTTTCTTTTAATTTCACACCATCAATGAAATTTGCTGCTTACTCAATTTGGGATTTGTGTCTTAATTGGAATGCTCTTTTTTTGTTGATATAATTTGAACTTTGAATTCTTGTTATTGCTCTCTTTTTATTTTTCCTTTAGATCTATTATATTAAGCAATAGTCTCTTTTCATTTCATCAATGAAAAGTTTTGTTTCCATTTTAAAATGAAATAGTTTCTTATCCATAAAAAGAATAAAAAGATGTTTTGATGGATAGTGATTAATGATTTCTTATAACTAAGTTATTATATTAGTTTACAATAGTATATATAGTATTTCCAACCTGAGCATTTCTCAAGTAGTTACAGAATGATATCCTCAACCAAGAGGTTAAAGGTTCGAATCCCCACCTAGAAAGGCCATGGTACATATATCAATCTGCCACAAAATAATAGCAAATATAGCTAGATCTAAAACAATTTGCAAACATGGTAGAATTATATGCTCAACCTTGTTAAAAGAATGTGAAATGTCGAAAGGCCCATTAGAGTATCTCTAACACCACACATCTATTTGTAATAGATGTACATCACAGATTTATATCAATTAGTGATGGGATAATTGTTGAGAGATGAATCGAAAGTAGACTATCTTAGTAAATCATTCATTTACTTTGTATCGATAGACCGTGACATATATCACAATTCACTACTTAGTACATCAGTTGACTTTTGTTCTTTAATTTGCAGTGTATTGATACGTTAGAATAGGGAAGAAGATAATTCTACACCTTTTTACCTATTTGAATCAAAACGATGGTGGATCAATATGATAAGTAATTTGGATAAGTCAATATAAAATACTTGGATTTTAAGGCTCTCAATATGCGTAATGCTCATTATAATTCGTATTTCTAAAATATTTGATAAAACTACCACTTAGTAGGATTATTGTGTGCCCTTTAAAATATTTTCAAATGTATAATATTTTTGCATCACCATCACTTGTATTACTATGCTAAAAAAGCTGTCATTCTCAATATTATCTGTTTATTCATCTTTTAATGGCATTCTTCCCTCATTTTGACTTGGGAGAATCTTATAAAGCAGGCATATAATGGAATTCATCAGCCAAAGAGTATAAAGGAAGCTGATTTGGCACGCAAACGTTTTATATTTGACGAGTTTTTTTACCTGCAGGTAAAGTTACCATCTTAAATTCTATTCCAACATTAGTTTTCCTTCATCTGTGAGCTTGTGGAAGAGTTGAATGAAAAAGATGACAGGGTTTTGACTATTATTGAAGTTGTTAAAATAGTTAAAAGCACTACAATTGCTTATCCTTGAAGGGAACCCCGTTATGGTTTCAGTCAAGAGAAAACAAAAAAAGAGAAAAAAAGGAGGAAAACATATTGTCAACAGTTTAGATAATTTTAATGGTTATGTTTGTTTATAATTTGATTTAATTTCTTGTTCACTTGTGGACTTAATACTTGACCACATATTATGATTTAACAGTTGGCACGCTTGTTCCAAATGCTTGAAGGTCTCGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAGTATCGTCAACCTCATTTAAATGCTGCATATATGAAGGAATGGGCTTGTCTCACCCAAAAGTTCCTTAAAGCCCTTCCATATTCCCTTACAGAGAGTCAGATGAAAGCTGTTGCAGAAATTATATGGGATTTGAAGCGACCAATTCCTATGAATAG

mRNA sequence

ATGAACCTTTTAAAAGGCATAGATGCATTGCCTATCAATGTAGATCCCATTCCAGAAGACATAACTCAGGGCTTTGGGCTGTTACGTCTTCATGATGCATATAATGGAATTCATCAGCCAAAGAGTATAAAGGAAGCTGATTTGGCACGCAAACGTTTTATATTTGACGAGTTTTTTTACCTGCAGTTGGCACGCTTGTTCCAAATGCTTGAAGGTCTCGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAAGAGTCAGATGAAAGCTGTTGCAGAAATTATATGGGATTTGAAGCGACCAATTCCTATGAATAG

Coding sequence (CDS)

ATGAACCTTTTAAAAGGCATAGATGCATTGCCTATCAATGTAGATCCCATTCCAGAAGACATAACTCAGGGCTTTGGGCTGTTACGTCTTCATGATGCATATAATGGAATTCATCAGCCAAAGAGTATAAAGGAAGCTGATTTGGCACGCAAACGTTTTATATTTGACGAGTTTTTTTACCTGCAGTTGGCACGCTTGTTCCAAATGCTTGAAGGTCTCGGTACAAGAATAGAGAAAGATTGTTTGCTGGACAAAGAGTCAGATGAAAGCTGTTGCAGAAATTATATGGGATTTGAAGCGACCAATTCCTATGAATAG

Protein sequence

MNLLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLEGLGTRIEKDCLLDKESDESCCRNYMGFEATNSYE
Homology
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BLAST of Clc07G06160 vs. NCBI nr
Match: XP_008454766.1 (PREDICTED: ATP-dependent DNA helicase homolog RECG, chloroplastic [Cucumis melo])

HSP 1 Score: 160.6 bits (405), Expect = 7.3e-36
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQ
Sbjct: 412 IARGIDALPINVDPIPEDITQGFGLLRLRDAYNGIHRPKSIKEADLARKRFMFDEFFYLQ 471

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLE LGTRIEKDCLLDK
Sbjct: 472 LARLFQMLERLGTRIEKDCLLDK 494

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BLAST of Clc07G06160 vs. NCBI nr
Match: TYK29006.1 (ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 7.3e-36
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQ
Sbjct: 586 IARGIDALPINVDPIPEDITQGFGLLRLRDAYNGIHRPKSIKEADLARKRFMFDEFFYLQ 645

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLE LGTRIEKDCLLDK
Sbjct: 646 LARLFQMLERLGTRIEKDCLLDK 668

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BLAST of Clc07G06160 vs. NCBI nr
Match: XP_031742292.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+P SIKEADLARKR +FDEFFYLQ
Sbjct: 230 IARGIDALPINVDPIPEDITQGFGLLRLRDAYNGIHRPNSIKEADLARKRLMFDEFFYLQ 289

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLEGLGTRIEKDCLLDK
Sbjct: 290 LARLFQMLEGLGTRIEKDCLLDK 312

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BLAST of Clc07G06160 vs. NCBI nr
Match: XP_011659838.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucumis sativus] >KAE8648137.1 hypothetical protein Csa_021528 [Cucumis sativus])

HSP 1 Score: 159.5 bits (402), Expect = 1.6e-35
Identity = 75/83 (90.36%), Postives = 79/83 (95.18%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+P SIKEADLARKR +FDEFFYLQ
Sbjct: 413 IARGIDALPINVDPIPEDITQGFGLLRLRDAYNGIHRPNSIKEADLARKRLMFDEFFYLQ 472

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLEGLGTRIEKDCLLDK
Sbjct: 473 LARLFQMLEGLGTRIEKDCLLDK 495

[Close]
BLAST of Clc07G06160 vs. NCBI nr
Match: XP_022150022.1 (ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Momordica charantia])

HSP 1 Score: 157.1 bits (396), Expect = 8.1e-35
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +G + LPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ
Sbjct: 452 IARGTEILPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 511

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLEGLGT IEKD LLDK
Sbjct: 512 LARLFQMLEGLGTTIEKDGLLDK 534

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BLAST of Clc07G06160 vs. ExPASy Swiss-Prot
Match: F4INA9 (ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECG PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-26
Identity = 55/81 (67.90%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 5   KGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLA 64
           + +  LP N+DPIP++IT+ FGL  L+DAY GIH+PK++ EADLARKR IFDEFFYLQLA
Sbjct: 413 RALRVLPANMDPIPKEITKVFGLPSLNDAYVGIHEPKTLDEADLARKRLIFDEFFYLQLA 472

Query: 65  RLFQMLEGLGTRIEKDCLLDK 86
           RL+QML+ LGT+IEKD LL+K
Sbjct: 473 RLYQMLQSLGTKIEKDVLLEK 493

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BLAST of Clc07G06160 vs. ExPASy Swiss-Prot
Match: Q55681 (ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=recG PE=3 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 4.3e-07
Identity = 25/57 (43.86%), Postives = 38/57 (66.67%), Query Frame = 0 

Query: 15  DPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLARLFQMLE 72
           DP+P++I + + L+ L  A   IH P++ ++  LAR+R +FDEFFYLQL  L +  E
Sbjct: 322 DPLPQEIREKYELIDLQTAIAQIHFPENTEKLSLARRRLVFDEFFYLQLGFLQRRYE 378

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BLAST of Clc07G06160 vs. ExPASy Swiss-Prot
Match: O34942 (ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) OX=224308 GN=recG PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 6.9e-05
Identity = 21/56 (37.50%), Postives = 35/56 (62.50%), Query Frame = 0 

Query: 8   DALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQL 64
           D+LP   DP+PE + + + L   + A   +HQP++ +   LAR+RF+++EF   QL
Sbjct: 169 DSLP---DPLPEKLRKSYKLPDYYQALKAMHQPETREALKLARRRFVYEEFLLFQL 221

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BLAST of Clc07G06160 vs. ExPASy TrEMBL
Match: A0A5D3DZB1 (ATP-dependent DNA helicase-like protein RECG OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001120 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.5e-36
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQ
Sbjct: 586 IARGIDALPINVDPIPEDITQGFGLLRLRDAYNGIHRPKSIKEADLARKRFMFDEFFYLQ 645

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLE LGTRIEKDCLLDK
Sbjct: 646 LARLFQMLERLGTRIEKDCLLDK 668

[Close]
BLAST of Clc07G06160 vs. ExPASy TrEMBL
Match: A0A1S3C041 (DNA helicase OS=Cucumis melo OX=3656 GN=LOC103495086 PE=3 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 3.5e-36
Identity = 76/83 (91.57%), Postives = 80/83 (96.39%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +GIDALPINVDPIPEDITQGFGLLRL DAYNGIH+PKSIKEADLARKRF+FDEFFYLQ
Sbjct: 412 IARGIDALPINVDPIPEDITQGFGLLRLRDAYNGIHRPKSIKEADLARKRFMFDEFFYLQ 471

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLE LGTRIEKDCLLDK
Sbjct: 472 LARLFQMLERLGTRIEKDCLLDK 494

[Close]
BLAST of Clc07G06160 vs. ExPASy TrEMBL
Match: A0A6J1D9K8 (DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.9e-35
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +G + LPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ
Sbjct: 452 IARGTEILPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 511

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLEGLGT IEKD LLDK
Sbjct: 512 LARLFQMLEGLGTTIEKDGLLDK 534

[Close]
BLAST of Clc07G06160 vs. ExPASy TrEMBL
Match: A0A6J1D8T6 (DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.9e-35
Identity = 75/83 (90.36%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +G + LPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ
Sbjct: 435 IARGTEILPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 494

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLEGLGT IEKD LLDK
Sbjct: 495 LARLFQMLEGLGTTIEKDGLLDK 517

[Close]
BLAST of Clc07G06160 vs. ExPASy TrEMBL
Match: A0A6J1IFJ2 (DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111472714 PE=3 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 5.1e-35
Identity = 73/83 (87.95%), Postives = 78/83 (93.98%), Query Frame = 0 

Query: 3   LLKGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQ 62
           + +GI+ALP+N+DPIPEDITQ FGLLRLHDAYNGIHQPKSI EADLARKRFIFDEFFYLQ
Sbjct: 434 IARGIEALPVNIDPIPEDITQSFGLLRLHDAYNGIHQPKSINEADLARKRFIFDEFFYLQ 493

Query: 63  LARLFQMLEGLGTRIEKDCLLDK 86
           LARLFQMLEGLGT IEKD LLDK
Sbjct: 494 LARLFQMLEGLGTTIEKDSLLDK 516

[Close]
BLAST of Clc07G06160 vs. TAIR 10
Match: AT2G01440.1 (DEAD/DEAH box RNA helicase family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.0e-27
Identity = 55/81 (67.90%), Postives = 69/81 (85.19%), Query Frame = 0 

Query: 5   KGIDALPINVDPIPEDITQGFGLLRLHDAYNGIHQPKSIKEADLARKRFIFDEFFYLQLA 64
           + +  LP N+DPIP++IT+ FGL  L+DAY GIH+PK++ EADLARKR IFDEFFYLQLA
Sbjct: 413 RALRVLPANMDPIPKEITKVFGLPSLNDAYVGIHEPKTLDEADLARKRLIFDEFFYLQLA 472

Query: 65  RLFQMLEGLGTRIEKDCLLDK 86
           RL+QML+ LGT+IEKD LL+K
Sbjct: 473 RLYQMLQSLGTKIEKDVLLEK 493

The following BLAST results are available for this feature:
BLAST of Clc07G06160 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008454766.17.3e-3691.57PREDICTED: ATP-dependent DNA helicase homolog RECG, chloroplastic [Cucumis melo][more]
TYK29006.17.3e-3691.57ATP-dependent DNA helicase-like protein RECG [Cucumis melo var. makuwa][more]
XP_031742292.11.6e-3590.36ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Cucumis sativ... [more]
XP_011659838.11.6e-3590.36ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X1 [Cucumis sativ... [more]
XP_022150022.18.1e-3590.36ATP-dependent DNA helicase homolog RECG, chloroplastic isoform X2 [Momordica cha... [more]
BLAST of Clc07G06160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
F4INA91.4e-2667.90ATP-dependent DNA helicase homolog RECG, chloroplastic OS=Arabidopsis thaliana O... [more]
Q556814.3e-0743.86ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC 6803 / Kazusa) ... [more]
O349426.9e-0537.50ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168) OX=224308 GN=r... [more]
BLAST of Clc07G06160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DZB13.5e-3691.57ATP-dependent DNA helicase-like protein RECG OS=Cucumis melo var. makuwa OX=1194... [more]
A0A1S3C0413.5e-3691.57DNA helicase OS=Cucumis melo OX=3656 GN=LOC103495086 PE=3 SV=1[more]
A0A6J1D9K83.9e-3590.36DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1[more]
A0A6J1D8T63.9e-3590.36DNA helicase OS=Momordica charantia OX=3673 GN=LOC111018298 PE=3 SV=1[more]
A0A6J1IFJ25.1e-3587.95DNA helicase OS=Cucurbita maxima OX=3661 GN=LOC111472714 PE=3 SV=1[more]
BLAST of Clc07G06160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G01440.11.0e-2767.90DEAD/DEAH box RNA helicase family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR14025FANCONI ANEMIA GROUP M FANCM FAMILY MEMBERcoord: 12..89
NoneNo IPR availablePANTHERPTHR14025:SF30ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTICcoord: 12..89

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc07G06160.1Clc07G06160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032508 DNA duplex unwinding
biological_process GO:0006310 DNA recombination
biological_process GO:0006281 DNA repair
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0005524 ATP binding
molecular_function GO:0016887 ATP hydrolysis activity
molecular_function GO:0003678 DNA helicase activity
molecular_function GO:0003676 nucleic acid binding